mRNA_H-elongata_contig141208.2854.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: D7G1M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M6_ECTSI) HSP 1 Score: 139 bits (349), Expect = 3.690e-36 Identity = 67/94 (71.28%), Postives = 77/94 (81.91%), Query Frame = 1
Query: 1 CVGCFIVFNHPLSLHRCMEDFSSRSMFKKCPKELMFEGIHKLKA--APEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQ 276
CVG FIVFNHPLS+HRCMEDFSS S FKK PKEL F+GIHKLK APEPDNIIWENLEF K+KR R NVTG +S + L ++FAL+++ TGIQ
Sbjct: 7 CVGAFIVFNHPLSVHRCMEDFSSLSRFKKYPKELKFQGIHKLKVVKAPEPDNIIWENLEFSKFKRRMRHNVTGLVSLMALTIAFALVMMTTGIQ 100
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: W4GBE8_9STRA (PHM7_cyt domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBE8_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 9.090e-18 Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query: 1 CVGCFIVFNHPLSLHRCMEDF-SSRSMFKKC--PKELMFEGIHKLK--AAPEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVF 285
C FIVFNH S RC+ D+ +S + +K+ PK+L F IH LK AAPEP NIIWENLE P +R R++ T F++F+LL+VS A+I LA G Q F
Sbjct: 361 CECAFIVFNHVESQRRCLADYRTSTTWWKRYFQPKDLRFRRIHPLKVTAAPEPSNIIWENLETPPVERFARRSFTNFVTFLLLVVSCAIISLAQGAQQAF 460
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: A0A024TEJ7_9STRA (PHM7_cyt domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEJ7_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.790e-16 Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query: 1 CVGCFIVFNHPLSLHRCMEDF-SSRSMFKKC--PKELMFEGIHKLK--AAPEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVF 285
C F+VFNH S +CM D+ +S S +K+ P L F GIH LK AAPEP NI+WENLE +R R+++T ++F+LL+VS A+I LA G Q F
Sbjct: 348 CECAFVVFNHVESQQQCMADYRTSHSWWKRWFQPTALRFRGIHALKVSAAPEPSNIVWENLETSAVERFARRSLTNVVTFVLLIVSCAIISLAQGAQQTF 447
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: T0Q5C1_SAPDV (PHM7_cyt domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q5C1_SAPDV) HSP 1 Score: 80.9 bits (198), Expect = 9.770e-16 Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 1 CVGCFIVFNHPLSLHRCMEDF--SSRSMFKKC-PKELMFEGIHKL--KAAPEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA 288
C F+VFN + RC+ D+ S S+ ++ PKEL F+G H L + APEP NIIWENLE P +R R+ +T F++F+LLLVS A+I LA Q FA
Sbjct: 730 CDCAFVVFNSVEAQRRCLRDYRTSQYSLARRFQPKELRFQGTHALWVQQAPEPSNIIWENLEVPVRERRLRRYLTNFVTFLLLLVSCAVISLAQSAQATFA 830
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: A0A485KTG1_9STRA (Aste57867_11460 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTG1_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.460e-15 Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query: 1 CVGCFIVFNHPLSLHRCMEDF-SSRSMFKKC--PKELMFEGIHKLKA--APEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVF 285
C F+VFNH S RC+ D+ +S S +K+ P+ L F G LK APEP NIIWENLE R R+++T F++FILL+VS A+I LA G Q F
Sbjct: 390 CECAFVVFNHVESQRRCLNDYRTSASSWKRAWQPRGLRFRGTFPLKVIQAPEPSNIIWENLETTPTARFLRRSLTNFITFILLIVSCAIISLAQGAQKKF 489
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: A0A1V9YX85_9STRA (Transmembrane protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YX85_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 7.610e-14 Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1
Query: 1 CVGCFIVFNHPLSLHRCMEDF--SSRSMFKKC-PKELMFEGIH--KLKAAPEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA 288
C F+VFN + RC+ D+ S S+ + PKEL FEG + K++ APEP NIIWENLE P +R R+ T F++F+LLL+S +I LA Q F+
Sbjct: 555 CECAFVVFNSVEAQKRCLRDYRMSCYSILRHFQPKELQFEGKYPLKIRQAPEPSNIIWENLEVPVAERRLRRYFTNFITFLLLLLSCGIISLAQSAQAKFS 655
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: A0A067BNG7_SAPPC (RSN1_7TM domain-containing protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BNG7_SAPPC) HSP 1 Score: 73.9 bits (180), Expect = 2.660e-13 Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 1
Query: 46 RCMEDF--SSRSMFKKC-PKELMFEGIHKL--KAAPEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA 288
RC+ D+ S S+ ++ PKEL F+G H L + APEP NIIWENLE P +R R+ VT F++F+LLLVS A+I LA Q FA
Sbjct: 736 RCLRDYRTSQYSLARRFQPKELRFQGTHALWVQQAPEPSNIIWENLEVPVRERRFRRYVTNFVTFLLLLVSCAVISLAQSAQATFA 821
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: W4GH45_9STRA (PHM7_cyt domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GH45_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 4.880e-13 Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query: 1 CVGCFIVFNHPLSLHRCMEDF-SSRSMFKKC--PKELMFEGIHKLKA--APEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA 288
C F+VFN S RC+ D+ +S + + PK L F+GIH+L+ APEP +IIWENLE +R R+ T F++F+LLL+S A+I +A Q F+
Sbjct: 481 CDSAFVVFNCVESQRRCVRDYRTSHKWYARYFQPKALRFQGIHRLQIQPAPEPSDIIWENLEVSTQERRYRRAFTNFIAFLLLLLSCAIISVAQSAQQTFS 581
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: W4GFZ6_9STRA (PHM7_cyt domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFZ6_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 4.880e-13 Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query: 1 CVGCFIVFNHPLSLHRCMEDF-SSRSMFKKC--PKELMFEGIHKLKA--APEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA 288
C F+VFN S RC+ D+ +S + + PK L F+GIH+L+ APEP +IIWENLE +R R+ T F++F+LLL+S A+I +A Q F+
Sbjct: 502 CDSAFVVFNCVESQRRCVRDYRTSHKWYARYFQPKALRFQGIHRLQIQPAPEPSDIIWENLEVSTQERRYRRAFTNFIAFLLLLLSCAIISVAQSAQQTFS 602
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: W4GI25_9STRA (PHM7_cyt domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GI25_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 4.930e-13 Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query: 1 CVGCFIVFNHPLSLHRCMEDF-SSRSMFKKC--PKELMFEGIHKLKA--APEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA 288
C F+VFN S RC+ D+ +S + + PK L F+GIH+L+ APEP +IIWENLE +R R+ T F++F+LLL+S A+I +A Q F+
Sbjct: 502 CDSAFVVFNCVESQRRCVRDYRTSHKWYARYFQPKALRFQGIHRLQIQPAPEPSDIIWENLEVSTQERRYRRAFTNFIAFLLLLLSCAIISVAQSAQQTFS 602 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig141208.2854.1 >prot_H-elongata_contig141208.2854.1 ID=prot_H-elongata_contig141208.2854.1|Name=mRNA_H-elongata_contig141208.2854.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp CVGCFIVFNHPLSLHRCMEDFSSRSMFKKCPKELMFEGIHKLKAAPEPDNback to top mRNA from alignment at H-elongata_contig141208:308..1000- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig141208.2854.1 ID=mRNA_H-elongata_contig141208.2854.1|Name=mRNA_H-elongata_contig141208.2854.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=693bp|location=Sequence derived from alignment at H-elongata_contig141208:308..1000- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig141208:308..1000- >mRNA_H-elongata_contig141208.2854.1 ID=mRNA_H-elongata_contig141208.2854.1|Name=mRNA_H-elongata_contig141208.2854.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig141208:308..1000- (Himanthalia elongata Himel1 dioecious)back to top |