prot_H-elongata_contig141193.2852.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig141193.2852.1
Unique Name	prot_H-elongata_contig141193.2852.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	156

Homology

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BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: D8LBH8_ECTSI (Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH8_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 2.650e-85
Identity = 128/154 (83.12%), Postives = 137/154 (88.96%), Query Frame = 0

Query:    3 VTIVCVDMSQAFLAPMTTVAGAAAVRRGSSLSMASDNSYHKKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 156
            V   CV  SQAF+ P  TV+GA+     SSL+MA++N+YHKKDFWIAPSILSADMAKLG+EVDNAM AGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVT PIDVHLMVSPVDRIVGDFA AGASFITFHPEASPHVDRTL LIKS+GCKAG
Sbjct:    8 VAFACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAG 161

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BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A835YRZ4_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ4_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.260e-68
Identity = 109/129 (84.50%), Postives = 117/129 (90.70%), Query Frame = 0

Query:   28 RRGSSLSMASDNSYHKKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 156
            R  SSL MA +N++H+KDF IAPSILSADMAKLGEEVDNAM AGAD+VHFDVMDNHYVPNLTIGPLVCK LR+HGV   IDVHLMVSPVDRIVGDFA AGAS+ITFHPEASPHVDRTLQLIKS GCK+G
Sbjct:   27 RPTSSLRMA-NNAWHRKDFQIAPSILSADMAKLGEEVDNAMAAGADVVHFDVMDNHYVPNLTIGPLVCKALRNHGVKNDIDVHLMVSPVDRIVGDFAEAGASYITFHPEASPHVDRTLQLIKSTGCKSG 154

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BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: W7TD18_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD18_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.460e-65
Identity = 98/114 (85.96%), Postives = 106/114 (92.98%), Query Frame = 0

Query:   43 KKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 156
            KKDFWIAPSILSAD AKLG+EVDN + AGADIVHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVDRI+ DFA+AGASFITFHPEA+ H+DRTLQLIKS GCK+G
Sbjct:   40 KKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSG 153

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BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S2S2V7_9STRA (Ribulose-phosphate 3-epimerase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2V7_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.780e-62
Identity = 94/114 (82.46%), Postives = 104/114 (91.23%), Query Frame = 0

Query:   43 KKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 156
            +KDF IAPSILSAD A LG EV N M AGAD+VHFDVMDNHYVPNLTIGP+VCK LR++G+ QPIDVHLMVSPVDRI+GDFA AGA++ITFHPEASPHVDRTLQLIKS+GCKAG
Sbjct:   68 EKDFLIAPSILSADFATLGPEVANVMAAGADVVHFDVMDNHYVPNLTIGPMVCKALRNYGIEQPIDVHLMVSPVDRIIGDFAEAGATYITFHPEASPHVDRTLQLIKSYGCKAG 181

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BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: F0YLQ5_AURAN (Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLQ5_AURAN)

HSP 1 Score: 200 bits (509), Expect = 8.480e-62
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 0

Query:   44 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 156
            KDF IAPSILSAD A+LGEEV N++ AGAD+VHFDVMDNHYVPNLTIGP+VC  LR HGVT PIDVHLMVSPVDRIVGDFA+AGAS+ITFHPEASPHVDRTLQLI+  GCKAG
Sbjct:   43 KDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAG 155

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BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S2UWQ6_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ6_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.280e-61
Identity = 104/155 (67.10%), Postives = 121/155 (78.06%), Query Frame = 0

Query:    2 IVTIVCVDMSQAFLAPMTTVAGAAAVRRGSSLSMASDNSYHKKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 156
            IV  + V +S  FL P T   G    +  SSL M +D  +  KD+ IAPSILSA+ AKLGEEVDN + AGAD+VHFDVMDNHYVPNLTIGP+VCK L+DHGVT PIDVHLMV PVDRI+GDFA+AGA +ITFHPEAS H+DR+L LIKS GCK+G
Sbjct:    9 IVLFLLVAVSCGFLTPQTLGLGTRVSK--SSLKMGAD--FPDKDYLIAPSILSANFAKLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALKDHGVTAPIDVHLMVDPVDRIIGDFADAGADYITFHPEASGHIDRSLGLIKSLGCKSG 159

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BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: UPI00111978BC (ribulose-phosphate 3-epimerase n=1 Tax=Methylotetracoccus oryzae TaxID=1919059 RepID=UPI00111978BC)

HSP 1 Score: 198 bits (503), Expect = 1.690e-61
Identity = 91/113 (80.53%), Postives = 102/113 (90.27%), Query Frame = 0

Query:   44 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 156
            KDFWIAPSILSAD A+LGEEVDN ++AGADIVHFDVMDNHYVPNLTIGPLVC+ LR HGVT PIDVHLMV PVDRI+ DFA AGA++ITFHPEAS HVDR+LQL++  GCK+G
Sbjct:    2 KDFWIAPSILSADFARLGEEVDNVLKAGADIVHFDVMDNHYVPNLTIGPLVCEALRKHGVTAPIDVHLMVKPVDRIIPDFAKAGATYITFHPEASEHVDRSLQLVRDSGCKSG 114

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BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S2LR41_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LR41_9STRA)

HSP 1 Score: 199 bits (507), Expect = 2.030e-61
Identity = 93/113 (82.30%), Postives = 103/113 (91.15%), Query Frame = 0

Query:   44 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 156
            KD+ IAPSILSA+ AKLGEEVDN +EAGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD I+G+FA AGAS+ITFHPEA+ HVDR+LQLIK  GCKAG
Sbjct:   56 KDYLIAPSILSANFAKLGEEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAIIGEFAKAGASYITFHPEATSHVDRSLQLIKGEGCKAG 168

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BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S2E7A3_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E7A3_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.320e-61
Identity = 93/113 (82.30%), Postives = 103/113 (91.15%), Query Frame = 0

Query:   44 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 156
            KD+ IAPSILSAD AKLGEEVDN +EAGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD  +GDF +AGAS+ITFHPEA+ HVDR+LQLIK+ GCKAG
Sbjct:   37 KDYLIAPSILSADFAKLGEEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAIGDFIDAGASYITFHPEATNHVDRSLQLIKAGGCKAG 149

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BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S1BBA4_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBA4_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.390e-61
Identity = 91/113 (80.53%), Postives = 102/113 (90.27%), Query Frame = 0

Query:   44 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 156
            KD+ IAPSILSAD AKLG+EVDN +EAGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD ++GDF NAGAS+ITFHPEA+ H+DR+LQLIK  GCK G
Sbjct:   38 KDYLIAPSILSADFAKLGQEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAVIGDFINAGASYITFHPEATNHIDRSLQLIKEGGCKCG 150

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot

BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LBH8_ECTSI	2.650e-85	83.12	Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus ...	[more]
A0A835YRZ4_9STRA	1.260e-68	84.50	Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema m...	[more]
W7TD18_9STRA	1.460e-65	85.96	Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsida...	[more]
A0A7S2S2V7_9STRA	1.780e-62	82.46	Ribulose-phosphate 3-epimerase (Fragment) n=1 Tax=...	[more]
F0YLQ5_AURAN	8.480e-62	84.07	Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus...	[more]
A0A7S2UWQ6_9STRA	1.280e-61	67.10	Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa ...	[more]
UPI00111978BC	1.690e-61	80.53	ribulose-phosphate 3-epimerase n=1 Tax=Methylotetr...	[more]
A0A7S2LR41_9STRA	2.030e-61	82.30	Ribulose-phosphate 3-epimerase n=1 Tax=Leptocylind...	[more]
A0A7S2E7A3_9STRA	2.320e-61	82.30	Ribulose-phosphate 3-epimerase n=2 Tax=Ditylum bri...	[more]
A0A7S1BBA4_9STRA	2.390e-61	80.53	Ribulose-phosphate 3-epimerase n=2 Tax=Corethron h...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000056	Ribulose-phosphate 3-epimerase-like	PFAM	PF00834	Ribul_P_3_epim	coord: 48..156 e-value: 4.5E-43 score: 146.9
IPR000056	Ribulose-phosphate 3-epimerase-like	PANTHER	PTHR11749	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	coord: 39..156
IPR000056	Ribulose-phosphate 3-epimerase-like	PROSITE	PS01085	RIBUL_P_3_EPIMER_1	coord: 75..89
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70		coord: 36..156 e-value: 5.2E-39 score: 135.6
None	No IPR available	PANTHER	PTHR11749:SF7	D-RIBULOSE-5-PHOSPHATE-3-EPIMERASE	coord: 39..156
IPR011060	Ribulose-phosphate binding barrel	SUPERFAMILY	51366	Ribulose-phoshate binding barrel	coord: 46..156

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig141193	contig	H-elongata_contig141193:156..623 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig141193.2852.1	mRNA_H-elongata_contig141193.2852.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig141193 156..623 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig141193.2852.1 ID=prot_H-elongata_contig141193.2852.1|Name=mRNA_H-elongata_contig141193.2852.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MIVTIVCVDMSQAFLAPMTTVAGAAAVRRGSSLSMASDNSYHKKDFWIAP
SILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRD
HGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKS
HGCKAG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000056	Ribul_P_3_epim-like
IPR013785	Aldolase_TIM
IPR011060	RibuloseP-bd_barrel