mRNA_H-elongata_contig141152.2851.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141152.2851.1
Unique NamemRNA_H-elongata_contig141152.2851.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141152.2851.1 vs. uniprot
Match: D7FSY6_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY6_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 6.550e-34
Identity = 62/80 (77.50%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    4 MEDIFEDERYYYLVLELVSGGELFEHLITKGAYSEKTAAAILKDLADALLFLHQRGIVHADLKPENLMLSSWDDLDAKVR 243
            M +IFEDE +YYLVLELVSGGELFEHLI  GAYSE+TAAA+L+DLA AL F+H++GIVHAD+KPENLMLSSWDD DA+V+
Sbjct:    1 MREIFEDESFYYLVLELVSGGELFEHLIRNGAYSEQTAAALLRDLAAALRFVHRKGIVHADVKPENLMLSSWDDDDARVK 80
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BLAST of mRNA_H-elongata_contig141152.2851.1 vs. uniprot
Match: A0A8J9T008_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T008_PHATR)

HSP 1 Score: 102 bits (255), Expect = 2.350e-26
Identity = 45/81 (55.56%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 GMEDIFEDERYYYLVLELVSGGELFEHLITKGAYSEKTAAAILKDLADALLFLHQRGIVHADLKPENLMLSSWDDLDAKVR 243
            G+ D++ED  +YYL+L+LV+GGE+FEHLI  GAYSE  AA ++ ++A AL FLH  G+VHADLKPENL+LS+ + +D  ++
Sbjct:   49 GLRDMYEDHNFYYLILDLVTGGEMFEHLIHYGAYSEADAARLMYEVASALAFLHGVGVVHADLKPENLLLSTKNRMDGTIK 129
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BLAST of mRNA_H-elongata_contig141152.2851.1 vs. uniprot
Match: D7G5Y1_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y1_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 4.810e-25
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:   10 DIFEDERYYYLVLELVSGGELFEHLITKGAYSEKTAAAILKDLADALLFLHQRGIVHADLKPENLMLSSWDDLDAKVR 243
            D+FED  +Y+ VLELVSGGE+FEHL   G YSE  AAA +++LA AL FLH + I+HADLKPENLMLSSWD  ++K++
Sbjct:  267 DVFEDSTFYFFVLELVSGGEMFEHLTRNGPYSEAKAAAFMRELAAALQFLHSQEIIHADLKPENLMLSSWDLGESKLK 344
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BLAST of mRNA_H-elongata_contig141152.2851.1 vs. uniprot
Match: A0A6H5JE67_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE67_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.840e-25
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:   10 DIFEDERYYYLVLELVSGGELFEHLITKGAYSEKTAAAILKDLADALLFLHQRGIVHADLKPENLMLSSWDDLDAKVR 243
            D+FED  +Y+ VLELVSGGE+FEHL   G YSE  AAA +++LA AL FLH + I+HADLKPENLMLSSWD  ++K++
Sbjct:  275 DVFEDSTFYFFVLELVSGGEMFEHLTRNGPYSEAKAAAFMRELAAALQFLHSQEIIHADLKPENLMLSSWDLGESKLK 352
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BLAST of mRNA_H-elongata_contig141152.2851.1 vs. uniprot
Match: A0A7S1VRI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VRI0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.480e-24
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:    1 GMEDIFEDERYYYLVLELVSGGELFEHLITKGAYSEKTAAAILKDLADALLFLHQRGIVHADLKPENLMLSSWDDLDAKVR 243
            G+ D++ED  ++YL+L+LVSGGE+FEHLI  GAYSE  AA ++ ++A AL FLH  G+VHADLKPENL+L S    D  ++
Sbjct:   41 GLRDMYEDYSHFYLILDLVSGGEMFEHLINYGAYSEADAARLMYEVASALAFLHGVGVVHADLKPENLLLCSKKRQDGTIK 121
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BLAST of mRNA_H-elongata_contig141152.2851.1 vs. uniprot
Match: A0A1Z5K2I9_FISSO (cGMP-dependent protein kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2I9_FISSO)

HSP 1 Score: 105 bits (261), Expect = 1.660e-24
Identity = 47/81 (58.02%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 GMEDIFEDERYYYLVLELVSGGELFEHLITKGAYSEKTAAAILKDLADALLFLHQRGIVHADLKPENLMLSSWDDLDAKVR 243
            G+ D++ED  Y+YL+L+LVSGGE+FEHLI  GAYSE  AA +++++A AL FLH  G+VHADLKPENL+LS+ + LD  ++
Sbjct:  189 GLRDMYEDHSYFYLILDLVSGGEMFEHLIHFGAYSEADAARLIQEVASALAFLHGVGVVHADLKPENLLLSTKNRLDGTIK 269
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BLAST of mRNA_H-elongata_contig141152.2851.1 vs. uniprot
Match: A0A836CF38_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF38_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.750e-24
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 GMEDIFEDERYYYLVLELVSGGELFEHLITKGAYSEKTAAAILKDLADALLFLHQRGIVHADLKPENLMLSSWD 222
            G+++IFED + +++V+ELVSGGE+FEHL   G YSE  A+A +++LA AL FLH   IVHADLKPENLMLSSWD
Sbjct:   50 GVQEIFEDSQNFFVVMELVSGGEMFEHLCRNGPYSEAKASAFMQELAHALAFLHAHRIVHADLKPENLMLSSWD 123
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BLAST of mRNA_H-elongata_contig141152.2851.1 vs. uniprot
Match: A0A7S1FV50_9STRA (cGMP-dependent protein kinase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FV50_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.390e-22
Identity = 45/81 (55.56%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 GMEDIFEDERYYYLVLELVSGGELFEHLITKGAYSEKTAAAILKDLADALLFLHQRGIVHADLKPENLMLSSWDDLDAKVR 243
            G+ D++ED  ++YL+++LV GGE+FE LI KGA+SE  AA +LK +A AL FLH  G+VHADLKPENLMLS+++  +A ++
Sbjct:   59 GLRDMYEDSTHFYLIIDLVKGGEMFEFLIRKGAFSEADAARLLKQVAKALNFLHGVGVVHADLKPENLMLSTFESRNAILK 139
[Close]
BLAST of mRNA_H-elongata_contig141152.2851.1 vs. uniprot
Match: A0A6U5HMN5_9STRA (cGMP-dependent protein kinase n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5HMN5_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.760e-22
Identity = 45/81 (55.56%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 GMEDIFEDERYYYLVLELVSGGELFEHLITKGAYSEKTAAAILKDLADALLFLHQRGIVHADLKPENLMLSSWDDLDAKVR 243
            G+ D++ED  ++YL+++LV GGE+FE LI KGA+SE  AA +LK +A AL FLH  G+VHADLKPENLMLS+++  +A ++
Sbjct:  221 GLRDMYEDSTHFYLIIDLVKGGEMFEFLIRKGAFSEADAARLLKQVAKALNFLHGVGVVHADLKPENLMLSTFESRNAILK 301
[Close]
BLAST of mRNA_H-elongata_contig141152.2851.1 vs. uniprot
Match: B7FVE2_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVE2_PHATC)

HSP 1 Score: 96.3 bits (238), Expect = 2.070e-22
Identity = 41/81 (50.62%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    1 GMEDIFEDERYYYLVLELVSGGELFEHLITKGAYSEKTAAAILKDLADALLFLHQRGIVHADLKPENLMLSSWDDLDAKVR 243
            G+ + +++  YYYLVL+LVSGGE+F+HL  +GAYSE  AA ++++++ +L FLH  G++H D+KPENLMLSS +  DA ++
Sbjct:   59 GLRENYDEGNYYYLVLDLVSGGEMFDHLCAQGAYSEADAARLIREVSSSLAFLHGIGVIHGDMKPENLMLSSENCSDAVIK 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141152.2851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSY6_ECTSI6.550e-3477.50cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A8J9T008_PHATR2.350e-2655.56Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
D7G5Y1_ECTSI4.810e-2562.82cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5JE67_9PHAE4.840e-2562.82cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A7S1VRI0_9STRA1.480e-2455.56Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A1Z5K2I9_FISSO1.660e-2458.02cGMP-dependent protein kinase n=2 Tax=Fistulifera ... [more]
A0A836CF38_9STRA5.750e-2463.51cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A7S1FV50_9STRA1.390e-2255.56cGMP-dependent protein kinase (Fragment) n=1 Tax=C... [more]
A0A6U5HMN5_9STRA1.760e-2255.56cGMP-dependent protein kinase n=3 Tax=Corethron hy... [more]
B7FVE2_PHATC2.070e-2250.62Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141152contigH-elongata_contig141152:305..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog2880.D7G5Y1
KEGG koko:K07376,ko:K08813,ko:K13412
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04626,ko04713,ko04714,ko04730,ko04740,ko04923,ko04970,ko05145,map04022,map04270,map04540,map04611,map04626,map04713,map04714,map04730,map04740,map04923,map04970,map05145
KEGG ModuleM00694
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009931,GO:0009987,GO:0010857,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.cGMP-dependent protein kinase activity
EggNOG OGsCOG0664@1,KOG0032@1,KOG0032@2759,KOG0614@2759
EC2.7.11.1,2.7.11.12
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size243
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929838.9678068-UTR-H-elongata_contig141152:304..3071622929838.9678068-UTR-H-elongata_contig141152:304..307Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141152 305..307 +
1691679178.339071-UTR-H-elongata_contig141152:304..3071691679178.339071-UTR-H-elongata_contig141152:304..307Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141152 305..307 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929838.9797223-CDS-H-elongata_contig141152:307..5501622929838.9797223-CDS-H-elongata_contig141152:307..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141152 308..550 +
1691679178.3673441-CDS-H-elongata_contig141152:307..5501691679178.3673441-CDS-H-elongata_contig141152:307..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141152 308..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141152.2851.1prot_H-elongata_contig141152.2851.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141152 308..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141152.2851.1

>prot_H-elongata_contig141152.2851.1 ID=prot_H-elongata_contig141152.2851.1|Name=mRNA_H-elongata_contig141152.2851.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MEDIFEDERYYYLVLELVSGGELFEHLITKGAYSEKTAAAILKDLADALL
FLHQRGIVHADLKPENLMLSSWDDLDAKVRQ
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mRNA from alignment at H-elongata_contig141152:305..550+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141152.2851.1 ID=mRNA_H-elongata_contig141152.2851.1|Name=mRNA_H-elongata_contig141152.2851.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig141152:305..550+ (Himanthalia elongata Himel1 dioecious)
GGAATGGAGGACATTTTCGAAGATGAGCGCTACTACTACCTCGTGCTGGA
GCTGGTGTCCGGGGGTGAGCTGTTCGAGCACCTCATCACGAAAGGTGCCT
ACAGCGAGAAAACAGCGGCGGCTATCCTGAAAGACCTGGCCGACGCCCTA
TTGTTCTTGCACCAGAGGGGCATCGTCCACGCCGACCTCAAACCCGAGAA
CCTGATGCTGTCGTCGTGGGACGATCTCGACGCGAAGGTGAGGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig141152:305..550+

>mRNA_H-elongata_contig141152.2851.1 ID=mRNA_H-elongata_contig141152.2851.1|Name=mRNA_H-elongata_contig141152.2851.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig141152:305..550+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGACATTTTCGAAGATGAGCGCTACTACTACCTCGTGCTGGAGCT
GGTGTCCGGGGGTGAGCTGTTCGAGCACCTCATCACGAAAGGTGCCTACA
GCGAGAAAACAGCGGCGGCTATCCTGAAAGACCTGGCCGACGCCCTATTG
TTCTTGCACCAGAGGGGCATCGTCCACGCCGACCTCAAACCCGAGAACCT
GATGCTGTCGTCGTGGGACGATCTCGACGCGAAGGTGAGGCAAATGGAGG
ACATTTTCGAAGATGAGCGCTACTACTACCTCGTGCTGGAGCTGGTGTCC
GGGGGTGAGCTGTTCGAGCACCTCATCACGAAAGGTGCCTACAGCGAGAA
AACAGCGGCGGCTATCCTGAAAGACCTGGCCGACGCCCTATTGTTCTTGC
ACCAGAGGGGCATCGTCCACGCCGACCTCAAACCCGAGAACCTGATGCTG
TCGTCGTGGGACGATCTCGACGCGAAGGTGAGGCAA
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