mRNA_H-elongata_contig141143.2850.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141143.2850.1
Unique NamemRNA_H-elongata_contig141143.2850.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141143.2850.1 vs. uniprot
Match: D8LTP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP3_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.210e-12
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 VENILGNVWNVSKIGVLPALHLVRLFFGLCLLFYGMAFRTLAFHIIVLRLSGLRQVRVCN 180
            VE+ILG++    ++   PALHL RL FGL LLFYGMAFRT AFH+IV R+SG +QV+V +
Sbjct:   11 VEDILGSLGRRLQMVGKPALHLTRLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSS 70
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BLAST of mRNA_H-elongata_contig141143.2850.1 vs. uniprot
Match: D8LTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP1_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.130e-11
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 VENILGNVWNVSKIGVLPALHLVRLFFGLCLLFYGMAFRTLAFHIIVLRLSGLRQVR 171
            VE+ L  +W+   +  +P LHL RL FGL LLFYGMAFRT AFH+IV R++G++QV+
Sbjct:    9 VEDALVTMWSYMAVVGVPVLHLGRLGFGLSLLFYGMAFRTFAFHVIVFRIAGMKQVQ 65
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BLAST of mRNA_H-elongata_contig141143.2850.1 vs. uniprot
Match: A0A6H5JP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP14_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 5.940e-11
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 VENILGNVWNVSKIGVLPALHLVRLFFGLCLLFYGMAFRTLAFHIIVLRLSGLRQVRVCNCVA 189
            VE++LG++    ++   P LHL RL FGL LLFYGMAFRT AFH+IV R+SG +QV +    A
Sbjct:  161 VEDVLGSLGRWLQMVGRPPLHLARLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVSLGKLAA 223
[Close]
BLAST of mRNA_H-elongata_contig141143.2850.1 vs. uniprot
Match: A0A6H5JP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP85_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.430e-9
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 VENILGNVWN-VSKIGVLPALHLVRLFFGLCLLFYGMAFRTLAFHIIVLRLSGLRQVR 171
            VE+ L  +W+ +  +GV P  HL R  FGL LLFYGMAFRT AFH+IV R++G++QV+
Sbjct:  211 VEDALVTMWSHMVNVGV-PVFHLGRFGFGLSLLFYGMAFRTFAFHVIVFRIAGMKQVQ 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141143.2850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LTP3_ECTSI3.210e-1260.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTP1_ECTSI4.130e-1156.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP14_9PHAE5.940e-1153.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP85_9PHAE3.430e-955.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141143contigH-elongata_contig141143:65..268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929838.924762-CDS-H-elongata_contig141143:64..2681622929838.924762-CDS-H-elongata_contig141143:64..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141143 65..268 +
1691679178.3249545-CDS-H-elongata_contig141143:64..2681691679178.3249545-CDS-H-elongata_contig141143:64..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141143 65..268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141143.2850.1prot_H-elongata_contig141143.2850.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141143 65..268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141143.2850.1

>prot_H-elongata_contig141143.2850.1 ID=prot_H-elongata_contig141143.2850.1|Name=mRNA_H-elongata_contig141143.2850.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
VENILGNVWNVSKIGVLPALHLVRLFFGLCLLFYGMAFRTLAFHIIVLRL
SGLRQVRVCNCVAYDDV*
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mRNA from alignment at H-elongata_contig141143:65..268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141143.2850.1 ID=mRNA_H-elongata_contig141143.2850.1|Name=mRNA_H-elongata_contig141143.2850.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig141143:65..268+ (Himanthalia elongata Himel1 dioecious)
GTCGAGAACATCTTGGGAAACGTCTGGAACGTCTCGAAGATTGGCGTGTT
GCCAGCGCTACATCTCGTGCGGCTGTTCTTCGGCCTCTGCCTCTTGTTCT
ATGGCATGGCGTTCCGAACCTTAGCCTTTCACATAATCGTGCTACGCCTT
TCGGGACTGCGTCAGGTACGTGTGTGTAACTGTGTGGCGTATGACGATGT
ATAG
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Coding sequence (CDS) from alignment at H-elongata_contig141143:65..268+

>mRNA_H-elongata_contig141143.2850.1 ID=mRNA_H-elongata_contig141143.2850.1|Name=mRNA_H-elongata_contig141143.2850.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig141143:65..268+ (Himanthalia elongata Himel1 dioecious)
GTCGAGAACATCTTGGGAAACGTCTGGAACGTCTCGAAGATTGGCGTGTT
GCCAGCGCTACATCTCGTGCGGCTGTTCTTCGGCCTCTGCCTCTTGTTCT
ATGGCATGGCGTTCCGAACCTTAGCCTTTCACATAATCGTGCTACGCCTT
TCGGGACTGCGTCAGGTACGTGTGTGTAACTGTGTGGCGTATGACGATGT
ATAGGTCGAGAACATCTTGGGAAACGTCTGGAACGTCTCGAAGATTGGCG
TGTTGCCAGCGCTACATCTCGTGCGGCTGTTCTTCGGCCTCTGCCTCTTG
TTCTATGGCATGGCGTTCCGAACCTTAGCCTTTCACATAATCGTGCTACG
CCTTTCGGGACTGCGTCAGGTACGTGTGTGTAACTGTGTGGCGTATGACG
ATGTATAG
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