mRNA_H-elongata_contig14102.2843.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14102.2843.1
Unique NamemRNA_H-elongata_contig14102.2843.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14102.2843.1 vs. uniprot
Match: D8LF29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF29_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.690e-23
Identity = 69/157 (43.95%), Postives = 88/157 (56.05%), Query Frame = 1 
Query:    1 VHDDLLRKEGWGDLRPVVLELPSCGGCAGNLPRSTL---SAGLDPQPG----CCGA-ASAIAATVQEAG-----------PAFAQSGVSALVFAVNAGSPLPTRRFGEVVSAAEEHLRSHGRGSESDDTISSRRSRVLVAFCDGSSIIYYTVSSGLE 414
            +H DL+RK GW D+R  +L LP C  C  +         S  + P+PG    CCG  A  + ATV E             P    +  + +VFAVNAG  +PTRRF +VV+AAEE LR   R +E  D +  +R  VL AFCDGSSIIYYTVSSG++
Sbjct:   17 LHVDLVRKSGWTDVRSTLLHLPPCVCCRRDSSHGQPLQDSPRVPPEPGGNNRCCGKIAHGLVATVGEERNCNRDGDLGDVPVELPAASTTIVFAVNAGRTIPTRRFSDVVAAAEERLRIDFRATEGRDQL--QRPCVLAAFCDGSSIIYYTVSSGID 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14102.2843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF29_ECTSI1.690e-2343.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14102contigH-elongata_contig14102:6590..7868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA-splicing endonuclease subunit Sen15
Ec32 orthologEc-21_006500.1
Exons3
Model size479
Cds size447
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14102.2843.1prot_H-elongata_contig14102.2843.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14102 6590..7837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929838.1512818-CDS-H-elongata_contig14102:6589..68461622929838.1512818-CDS-H-elongata_contig14102:6589..6846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14102 6590..6846 +
1691679177.972098-CDS-H-elongata_contig14102:6589..68461691679177.972098-CDS-H-elongata_contig14102:6589..6846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14102 6590..6846 +
1622929838.174176-CDS-H-elongata_contig14102:7169..72981622929838.174176-CDS-H-elongata_contig14102:7169..7298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14102 7170..7298 +
1691679177.981418-CDS-H-elongata_contig14102:7169..72981691679177.981418-CDS-H-elongata_contig14102:7169..7298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14102 7170..7298 +
1622929838.1998832-CDS-H-elongata_contig14102:7776..78371622929838.1998832-CDS-H-elongata_contig14102:7776..7837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14102 7777..7837 +
1691679177.9908347-CDS-H-elongata_contig14102:7776..78371691679177.9908347-CDS-H-elongata_contig14102:7776..7837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14102 7777..7837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929838.2150593-UTR-H-elongata_contig14102:7837..78681622929838.2150593-UTR-H-elongata_contig14102:7837..7868Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14102 7838..7868 +
1691679178.0036814-UTR-H-elongata_contig14102:7837..78681691679178.0036814-UTR-H-elongata_contig14102:7837..7868Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14102 7838..7868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14102.2843.1

>prot_H-elongata_contig14102.2843.1 ID=prot_H-elongata_contig14102.2843.1|Name=mRNA_H-elongata_contig14102.2843.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
VHDDLLRKEGWGDLRPVVLELPSCGGCAGNLPRSTLSAGLDPQPGCCGAA
SAIAATVQEAGPAFAQSGVSALVFAVNAGSPLPTRRFGEVVSAAEEHLRS
HGRGSESDDTISSRRSRVLVAFCDGSSIIYYTVSSGLECHGSEGSALL*
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mRNA from alignment at H-elongata_contig14102:6590..7868+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14102.2843.1 ID=mRNA_H-elongata_contig14102.2843.1|Name=mRNA_H-elongata_contig14102.2843.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1279bp|location=Sequence derived from alignment at H-elongata_contig14102:6590..7868+ (Himanthalia elongata Himel1 dioecious)
GTACATGACGATCTCCTGAGGAAGGAAGGATGGGGTGATCTTCGACCGGT
GGTACTCGAGCTTCCATCTTGCGGTGGCTGCGCTGGAAATCTACCCCGAA
GTACGTTGTCGGCGGGACTAGACCCACAGCCCGGCTGCTGTGGCGCAGCT
AGCGCGATTGCTGCGACGGTGCAAGAGGCAGGACCCGCCTTTGCACAATC
GGGTGTATCGGCGCTGGTGTTCGCCGTAAACGCAGGATCGCCGCTCCCCA
CGCGAAGGTACGCGAGGCACCCTTCGAGGAATGCTCCGATAGGCAAACGG
GCAGCTTGCTAAATGAACGCACCCCGTGTTGTACTCGTAGTTCTTGTTCG
AAAGTTCTCCGTGATAACTGATCGTTTTTCGCGTGGTTCATCTGATTTGA
ACACAAGAGAGCGAGCCCTCGTCGCGTGGAAACATATATGATCTAGCACT
CTCTCGTGTACAAACTGTCGGGTTGGCGCTGTTTACAGCAAAATAATAAT
CGGAGCTGCGCGGCACTCGAAGCGTCCGTGCATGCGCGTGTTTCTTTGTG
ACGATACGCTGTCCTGTATCGCATGGGAAGATTCGGGGAAGTCGTGTCGG
CTGCAGAAGAACACCTACGGTCGCATGGACGTGGATCAGAGTCCGACGAC
ACAATCTCCAGCCGGCGATCCCGCGTCCTTGTGGCTTTTTGTGATGGATC
TAGCATAATGTGAGACCAATTTTACCATCAAGGGGCTAGCCCATACCGCT
CACCAATGCCTGCGGCTTTTACATCGATCCCTATGGTCTACGTTACCTAT
CAAAGTATGTACAAAGTAGCTCTTTTCTTGCCCGAGTTCTCAGAAGCACA
ATCAGTTTGGAGTCCGCCAATGTTGAATTATTTGTCGGTTGGAGAGTATG
CCGTTATTCTTCGCTACGGAGTAAAAGCTCATTACGTTGCTTTCATCTTC
TACACTCGCTTCCATACTCTATTATCTTTCTGTATTTTATCTCCAAGCTG
CGCGCTCCAGAGGAGGTTCGGCATGTCGCTGTTGTGCCCCCTTGTTCTAA
AGGTTAAATGCATTATGCTGATGTTGTAGATCAAGGTTGACTCCGCCAGA
CCCAGCAACCCTTAGTTCGCTGGCACTCGCGCCACCCCGCGCCTGTTCTT
GCTCTGTGTTTGTTCGTGCGTGCGGCTATACGTAAAGCTACTACACCGTT
TCCAGCGGGCTTGAGTGTCATGGCAGCGAGGGTAGCGCGTTGTTGTGAGC
AGCGAAGGGCGGGGGAGGGAGCGCGCTGC
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Coding sequence (CDS) from alignment at H-elongata_contig14102:6590..7868+

>mRNA_H-elongata_contig14102.2843.1 ID=mRNA_H-elongata_contig14102.2843.1|Name=mRNA_H-elongata_contig14102.2843.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig14102:6590..7868+ (Himanthalia elongata Himel1 dioecious)
GTACATGACGATCTCCTGAGGAAGGAAGGATGGGGTGATCTTCGACCGGT
GGTACTCGAGCTTCCATCTTGCGGTGGCTGCGCTGGAAATCTACCCCGAA
GTACGTTGTCGGCGGGACTAGACCCACAGCCCGGCTGCTGTGGCGCAGCT
AGCGCGATTGCTGCGACGGTGCAAGAGGCAGGACCCGCCTTTGCACAATC
GGGTGTATCGGCGCTGGTGTTCGCCGTAAACGCAGGATCGCCGCTCCCCA
CGCGAAGGTACATGACGATCTCCTGAGGAAGGAAGGATGGGGTGATCTTC
GACCGGTGGTACTCGAGCTTCCATCTTGCGGTGGCTGCGCTGGAAATCTA
CCCCGAAGTACGTTGTCGGCGGGACTAGACCCACAGCCCGGCTGCTGTGG
CGCAGCTAGCGCGATTGCTGCGACGGTGCAAGAGGCAGGACCCGCCTTTG
CACAATCGGGTGTATCGGCGCTGGTGTTCGCCGTAAACGCAGGATCGCCG
CTCCCCACGCGAAGATTCGGGGAAGTCGTGTCGGCTGCAGAAGAACACCT
ACGGTCGCATGGACGTGGATCAGAGTCCGACGACACAATCTCCAGCCGGC
GATCCCGCGTCCTTGTGGCTTTTTGTGATGGATCTAGCATAATATTCGGG
GAAGTCGTGTCGGCTGCAGAAGAACACCTACGGTCGCATGGACGTGGATC
AGAGTCCGACGACACAATCTCCAGCCGGCGATCCCGCGTCCTTGTGGCTT
TTTGTGATGGATCTAGCATAATCTACTACACCGTTTCCAGCGGGCTTGAG
TGTCATGGCAGCGAGGGTAGCGCGTTGTTGTGACTACTACACCGTTTCCA
GCGGGCTTGAGTGTCATGGCAGCGAGGGTAGCGCGTTGTTGTGA
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