prot_H-elongata_contig14097.2839.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig14097.2839.1
Unique Name	prot_H-elongata_contig14097.2839.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	181

Homology

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BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: D8LBD3_ECTSI (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD3_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 6.430e-122
Identity = 168/180 (93.33%), Postives = 177/180 (98.33%), Query Frame = 0

Query:    1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDDIL 180
            MRPLTDDETKVLFEKLANY+GKNIE LINRPDEKCCFRLHKDRVYYVSERLMRQATSVSR+TLLSLGTCFGKFTK+GKFRLHITALDY+SQ+AK+KVWVKPSAEMSFLYGNHVQKSGLGRITE+TP YGG VVYSMSDVPLGFGVAAQPTE+CKDLDPTAVVVLHQADVGEYLRVEDD+L
Sbjct:    1 MRPLTDDETKVLFEKLANYIGKNIEQLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRDTLLSLGTCFGKFTKSGKFRLHITALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDLL 180

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BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: A0A835ZB99_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB99_9STRA)

HSP 1 Score: 303 bits (777), Expect = 1.860e-103
Identity = 146/178 (82.02%), Postives = 160/178 (89.89%), Query Frame = 0

Query:    1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDD 178
            MRPLTD+ET  LFEKLANY+GK+IE LINRPDE  CFRLHKDRVYYVSERLMRQ+T+VSR+ LLSLGTCFGKFTKT KFRL IT LDY+SQ+AK KVWVKP AEMSFLYGNHV KSGL RITE+TP Y GVVVYSM+D+P+GFGVAAQ TEYC+DLD  AVVVLHQAD+GEYLRVEDD
Sbjct:    1 MRPLTDEETATLFEKLANYIGKDIEKLINRPDEAYCFRLHKDRVYYVSERLMRQSTNVSRDNLLSLGTCFGKFTKTKKFRLGITCLDYISQYAKHKVWVKPGAEMSFLYGNHVAKSGLARITEATPQYAGVVVYSMNDIPMGFGVAAQATEYCRDLDAAAVVVLHQADIGEYLRVEDD 178

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BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: B5Y3S4_PHATC (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3S4_PHATC)

HSP 1 Score: 279 bits (713), Expect = 1.050e-93
Identity = 133/180 (73.89%), Postives = 157/180 (87.22%), Query Frame = 0

Query:    1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLR-VEDDI 179
            MRPLT++ETK LF KL+ Y+GKNIE LINR DE+ CFRL KDR YY+SE +M+ ATS+ RE LL +GTC GKFTKTGKFRLHITAL+Y+SQ+AK+KVWVKPSAEMSFLYGNHV K+GL R+TE+TP Y GVVVYSMSD+PLGFGVAAQ TE+C+ LDPT  VVLHQAD+GEYLR +E+D+
Sbjct:    1 MRPLTEEETKSLFLKLSEYIGKNIERLINRSDERHCFRLIKDRCYYISESIMKSATSIGREHLLHVGTCMGKFTKTGKFRLHITALEYISQYAKYKVWVKPSAEMSFLYGNHVSKNGLARMTENTPQYSGVVVYSMSDIPLGFGVAAQSTEHCQQLDPTGNVVLHQADIGEYLRGLEEDM 180

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BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: A0A7S2S5A9_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5A9_9STRA)

HSP 1 Score: 275 bits (702), Expect = 4.970e-92
Identity = 131/180 (72.78%), Postives = 157/180 (87.22%), Query Frame = 0

Query:    1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLR-VEDDI 179
            MRPLT+DETK+LF+KLA Y+GK+IE +INR DE+ CFRL KDRVYYVSE  M+ + S+SR+ +L  GTC GKF+K+GKFRLH+TALDY+SQ+AK+KVWVKPSAEMSFLYGN++ KSGL RITESTP Y GVVVY+MSD+PLGFGV+AQ TE CKDL+P   VVLHQAD+GEYLR VEDD+
Sbjct:    1 MRPLTEDETKLLFQKLAEYIGKSIEQMINRKDERHCFRLMKDRVYYVSESAMKYSASISRDNILHFGTCLGKFSKSGKFRLHVTALDYLSQYAKYKVWVKPSAEMSFLYGNNILKSGLARITESTPQYAGVVVYNMSDLPLGFGVSAQNTEACKDLEPMGNVVLHQADIGEYLRGVEDDM 180

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BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: A0A6I9Z2T1_9SAUR (60S ribosome subunit biogenesis protein NIP7 homolog n=21 Tax=Sauria TaxID=32561 RepID=A0A6I9Z2T1_9SAUR)

HSP 1 Score: 273 bits (698), Expect = 1.950e-91
Identity = 127/179 (70.95%), Postives = 157/179 (87.71%), Query Frame = 0

Query:    1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDDI 179
            MRPLT+DET+VLFEKLA Y+G+NI+ L++RPD   CFRLHKDRVYY+SERL++ AT++ R++L+SLGTCFGKFTKT KFRLHITALDY++ +AK+KVWVKP AE SFLYGNH+ KSGLGRITEST  Y GVVVYSM+DVPLGFGVAA+ T+ C+ +DP A+VV HQAD+GEY+R E+ +
Sbjct:    1 MRPLTEDETRVLFEKLARYVGENIQLLVDRPDGTYCFRLHKDRVYYLSERLLKLATNIPRDSLVSLGTCFGKFTKTQKFRLHITALDYLAPYAKYKVWVKPGAEQSFLYGNHLLKSGLGRITESTAQYQGVVVYSMADVPLGFGVAAKTTQECRKVDPMAIVVFHQADIGEYIRHEETL 179

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BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: A0A485KEQ5_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=26 Tax=Oomycota TaxID=4762 RepID=A0A485KEQ5_9STRA)

HSP 1 Score: 273 bits (697), Expect = 2.770e-91
Identity = 129/179 (72.07%), Postives = 153/179 (85.47%), Query Frame = 0

Query:    1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDDI 179
            MRPLTD+E K +FEK++ Y+G+N++HL+ RPDEK CFRLH D VYYVSE+LMRQAT++  E LLSLGT  GK TKT KF L IT LDY++Q+AK+KVW+KP++EMSFLYGN+V KSGLGRITE TP Y GVVVYSM+DVPLGFGVAAQ TE CKDL PT  VVLHQAD+GEYLRVED++
Sbjct:    1 MRPLTDEEMKTVFEKISKYIGRNVQHLVVRPDEKFCFRLHGDIVYYVSEKLMRQATNIGTEQLLSLGTAVGKLTKTKKFHLRITFLDYLAQYAKYKVWIKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVVVYSMNDVPLGFGVAAQATELCKDLAPTDYVVLHQADIGEYLRVEDEM 179

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BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog n=13 Tax=Sarcopterygii TaxID=8287 RepID=NIP7_XENTR)

HSP 1 Score: 271 bits (693), Expect = 1.130e-90
Identity = 125/179 (69.83%), Postives = 155/179 (86.59%), Query Frame = 0

Query:    1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDDI 179
            MRPLTD+ETK +FEKL+ Y+G+NI+ L++RPD   CFRLH DRVYYVSER+++ AT+++R+ L+SLGTCFGKFTKT KFRLH+TALDY++ +AK+KVWVKP AE SFLYGNHV KSGLGRITE+T  Y GVVVYSM+D+PLGFGVAA+ T+ C+ LDP A+VV HQADVGEY+R ED +
Sbjct:    1 MRPLTDEETKAMFEKLSKYIGENIKLLVDRPDGTYCFRLHNDRVYYVSERILKLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEYIRHEDTL 179

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BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: H9G7K1_ANOCA (60S ribosome subunit biogenesis protein NIP7 homolog n=5 Tax=Bifurcata TaxID=1329961 RepID=H9G7K1_ANOCA)

HSP 1 Score: 271 bits (693), Expect = 1.130e-90
Identity = 127/179 (70.95%), Postives = 155/179 (86.59%), Query Frame = 0

Query:    1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDDI 179
            MRPLT++ET+ LFEKL+ Y+G+NI+ LI RPD   CFRLHKDRVYY+SER+++ AT+V R+ L+SLGTCFGKFTKT KFRLHITALDY++ +AK+KVWVKPSAE SFLYGNHV KSGLGRITEST  Y GVVVYSM+DVPLGFGVAA+ T+ C+ +DP A+VV HQAD+GEY+R E+ +
Sbjct:    1 MRPLTEEETRALFEKLSKYIGENIQLLIERPDGAYCFRLHKDRVYYLSERILKLATNVPRQNLISLGTCFGKFTKTQKFRLHITALDYLAPYAKYKVWVKPSAEQSFLYGNHVLKSGLGRITESTSQYQGVVVYSMADVPLGFGVAAKSTQECRRMDPMAIVVFHQADIGEYIRHEETL 179

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BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: A0A8C4T854_ERPCA (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4T854_ERPCA)

HSP 1 Score: 270 bits (691), Expect = 2.270e-90
Identity = 125/179 (69.83%), Postives = 156/179 (87.15%), Query Frame = 0

Query:    1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLRVEDDI 179
            MRPLTD+ETK LFEK++ Y+G+NI+ L++RPD   CFRLHKDRVYY+SE+L++ +T++SR+ L+S+GTCFGKFTKT KFRLH+TALDY++ +AK+KVWVKP AE SFLYGNHV KSGLGRITE+T  Y GVVVYSM+DVPLGFGVAA+ T+ C+ LDP A+VV HQAD+GEYLR ED +
Sbjct:    1 MRPLTDEETKALFEKVSKYIGENIKLLVDRPDGVYCFRLHKDRVYYLSEKLLKLSTNISRDKLISVGTCFGKFTKTMKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKLDPMAIVVFHQADIGEYLRSEDTL 179

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BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Match: A0A6U3ZD71_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZD71_9STRA)

HSP 1 Score: 270 bits (691), Expect = 2.350e-90
Identity = 127/180 (70.56%), Postives = 155/180 (86.11%), Query Frame = 0

Query:    1 MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVKPSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPTEYCKDLDPTAVVVLHQADVGEYLR-VEDDI 179
            MRPLT++ETK LF KL  YMG+N+E LINR DE+ CFRL KDRVYYVSE++M+ +T++SR+ LL +GTC GKFTKTGKFRLHITAL+Y+SQ+ K+KVW+KPSAEMSFLYGNH+ KSG+ RITESTP Y GV+VY+  DVPLGFGVAAQ T+ C++L+P   VVLH+ADVGEYLR VEDD+
Sbjct:    1 MRPLTEEETKTLFTKLVEYMGRNVERLINREDERHCFRLVKDRVYYVSEKVMKASTTISRDDLLHVGTCLGKFTKTGKFRLHITALEYLSQYCKYKVWLKPSAEMSFLYGNHITKSGMARITESTPQYAGVIVYNAHDVPLGFGVAAQSTDKCRELEPMGNVVLHRADVGEYLRGVEDDM 180

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot

BLAST of mRNA_H-elongata_contig14097.2839.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LBD3_ECTSI	6.430e-122	93.33	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
A0A835ZB99_9STRA	1.860e-103	82.02	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
B5Y3S4_PHATC	1.050e-93	73.89	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
A0A7S2S5A9_9STRA	4.970e-92	72.78	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
A0A6I9Z2T1_9SAUR	1.950e-91	70.95	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
A0A485KEQ5_9STRA	2.770e-91	72.07	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
NIP7_XENTR	1.130e-90	69.83	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
H9G7K1_ANOCA	1.130e-90	70.95	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
A0A8C4T854_ERPCA	2.270e-90	69.83	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
A0A6U3ZD71_9STRA	2.350e-90	70.56	60S ribosome subunit biogenesis protein NIP7 homol...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 95..170 e-value: 6.1E-8 score: 42.4
IPR002478	PUA domain	PROSITE	PS50890	PUA	coord: 94..170 score: 11.367
IPR005155	UPF0113, PUA domain	PFAM	PF03657	UPF0113	coord: 96..174 e-value: 7.7E-22 score: 77.3
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10		coord: 94..180 e-value: 6.0E-40 score: 137.1
IPR040598	UPF0113, pre-PUA domain	PFAM	PF17833	UPF0113_N	coord: 2..83 e-value: 2.6E-33 score: 114.4
IPR016686	Ribosome biogenesis factor, NIP7	PIRSF	PIRSF017190	NIP7	coord: 1..180 e-value: 1.8E-84 score: 279.6
None	No IPR available	GENE3D	3.10.450.220		coord: 1..93 e-value: 3.8E-43 score: 147.3
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..179
None	No IPR available	PANTHER	PTHR23415:SF4	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG	coord: 1..179
None	No IPR available	SUPERFAMILY	88802	Pre-PUA domain	coord: 1..94
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 96..170

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig14097	contig	H-elongata_contig14097:4423..6490 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig14097.2839.1	mRNA_H-elongata_contig14097.2839.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig14097 4423..6490 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig14097.2839.1 ID=prot_H-elongata_contig14097.2839.1|Name=mRNA_H-elongata_contig14097.2839.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
MRPLTDDETKVLFEKLANYMGKNIEHLINRPDEKCCFRLHKDRVYYVSER
LMRQATSVSRETLLSLGTCFGKFTKTGKFRLHITALDYVSQHAKFKVWVK
PSAEMSFLYGNHVQKSGLGRITESTPLYGGVVVYSMSDVPLGFGVAAQPT
EYCKDLDPTAVVVLHQADVGEYLRVEDDIL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002478	PUA
IPR005155	UPF0113_PUA
IPR036974	PUA_sf
IPR040598	UPF0113_N
IPR016686	Ribosomal_synth_fac_NIP7
IPR015947	PUA-like_sf