mRNA_H-elongata_contig14088.2831.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14088.2831.1
Unique NamemRNA_H-elongata_contig14088.2831.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14088.2831.1 vs. uniprot
Match: A0A6H5L308_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L308_9PHAE)

HSP 1 Score: 916 bits (2368), Expect = 0.000e+0
Identity = 465/540 (86.11%), Postives = 485/540 (89.81%), Query Frame = 1 
Query:    1 QFYLDPKPLLKLIFTKFLGSASGFVDVVAKHIPSPVANAQKKARKISAATYTGDQTSSIATAMAKCDPLGPLMINVVKLYSTPDGQAFTALGRVYSGSVRTGQKVKVLGEAYSTQDEEDMAIKEVTAISISQGRTVMDINLAKAGNWVLLEGVDASIHKTATICDAEEGGVGGGEEAAIFRPLSFKTTPVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKVEESGEHVVLGTGELYMDCLMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEIDGPNILVDDTLPSEASESGTILREAESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPVFRVEVQAPADVVSAIYPALQRRRGHVVQDAPKPGAPFYTVKAFIPAIDSFGFETDLRAYTQGQAFCTQVFDHWNIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 1620
            QFYLDPKPLLKLIFTKFLGSASGFVDVVAKH+PSPVANAQ K  +    TYTGDQTSSIA AMAKCDPLGPLM+NVVKLYSTPDG+AFTALGRVYSG+VRTGQKVKVLGEAYST DEEDMA+KEVTAISISQGRTVMDIN+AKAGNWVLLEGVDA+IHKTATIC+AEEGG+GGGEEAAIFRPLSFKTT                                   VEESGEHVVLGTGELYMDC+MHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQ+KYDWDLLAARSIWAFGPE DGPNILVDDTLPSE  ++  +    +SIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEP+FRVEVQAPADVVSAIYPALQ+RRGHV  DAPKPGAPFYTVKAFIP+IDSFGFETDLRAYTQGQAFCTQVFDHW+IVPGDPLDRNIILHPLEPSPPQHLAREFMVR
Sbjct:  433 QFYLDPKPLLKLIFTKFLGSASGFVDVVAKHVPSPVANAQNKITR----TYTGDQTSSIAVAMAKCDPLGPLMVNVVKLYSTPDGEAFTALGRVYSGTVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINMAKAGNWVLLEGVDATIHKTATICEAEEGGLGGGEEAAIFRPLSFKTT----------------------------------AVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKN-RLNACRDSIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 931
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BLAST of mRNA_H-elongata_contig14088.2831.1 vs. uniprot
Match: A0A835Z8L8_9STRA (GTPase of the U5 snRNP particle n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L8_9STRA)

HSP 1 Score: 807 bits (2084), Expect = 4.950e-284
Identity = 390/540 (72.22%), Postives = 461/540 (85.37%), Query Frame = 1 
Query:    1 QFYLDPKPLLKLIFTKFLGSASGFVDVVAKHIPSPVANAQKKARKISAATYTGDQTSSIATAMAKCDPLGPLMINVVKLYSTPDGQAFTALGRVYSGSVRTGQKVKVLGEAYSTQDEEDMAIKEVTAISISQGRTVMDINLAKAGNWVLLEGVDASIHKTATICDAEEGGVGGGEEAAIFRPLSFKTTPVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKVEESGEHVVLGTGELYMDCLMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEIDGPNILVDDTLPSEASESGTILREAESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPVFRVEVQAPADVVSAIYPALQRRRGHVVQDAPKPGAPFYTVKAFIPAIDSFGFETDLRAYTQGQAFCTQVFDHWNIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 1620
            Q  L+PKPLL+L+  +FLGS  GFVD+VAK +PSPVA A +K  +I    YTG   SS   AMA+CD LGPLMINVVKLYS PDGQ+F A GR+YSG+VRTGQKV+VLGE YS +D+ED A++EVTA+S+  GR  +D+ LAKAGNWVLLEGVDA+I +TATI DAE     G ++ AIFRPL      V+KLAVEPL P++LPK+VEGLR++SK+YP+A TKVEESGEHV+ GTGEL ++C MHDLR MYA+ EVKVADPS  F ETVV+TSSLKCFSETPNK+NKLTMIAEPL+ GLA DIE G VSI+WDRKTLG+FFQ+KY+WDLLA+RS+WAFGP+  GPN+LVDDTLPSE   + ++     S++QGFQWGCREGPLCDEP+RN KFKILDAV+A+E IHRGGGQ+IPT+RRVAYSAFL+A+PRLMEPV+ VE+QAPADVV A+YP LQRRRGHVVQD+PKPGAPFYTV+A+IP IDSFGFETDLR+YTQGQAFCTQVFDHW+IVPGDPLDRNI+LHPLEPSPPQHLAR+FMV+
Sbjct:  407 QLSLNPKPLLRLVLGQFLGSTGGFVDMVAKFVPSPVAAAAEKVARI----YTGAPDSSEFQAMARCDALGPLMINVVKLYSMPDGQSFVAWGRIYSGTVRTGQKVRVLGETYSLEDDEDSAVREVTAVSVPGGRHRLDVTLAKAGNWVLLEGVDANITRTATITDAE-----GADDVAIFRPLLVGNVSVMKLAVEPLRPAELPKMVEGLRRVSKTYPMAATKVEESGEHVIYGTGELMLECAMHDLREMYAEIEVKVADPSCTFRETVVDTSSLKCFSETPNKKNKLTMIAEPLDEGLAQDIEIGAVSIDWDRKTLGDFFQSKYNWDLLASRSVWAFGPDAMGPNVLVDDTLPSEVDRA-SLASIKSSVIQGFQWGCREGPLCDEPLRNTKFKILDAVVASEAIHRGGGQIIPTSRRVAYSAFLLASPRLMEPVYAVEIQAPADVVGALYPVLQRRRGHVVQDSPKPGAPFYTVRAYIPVIDSFGFETDLRSYTQGQAFCTQVFDHWSIVPGDPLDRNIVLHPLEPSPPQHLARDFMVK 936
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BLAST of mRNA_H-elongata_contig14088.2831.1 vs. uniprot
Match: A0A7S2CQL7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQL7_9STRA)

HSP 1 Score: 784 bits (2024), Expect = 2.800e-281
Identity = 384/530 (72.45%), Postives = 440/530 (83.02%), Query Frame = 1 
Query:   34 LIFTKFLGSASGFVDVVAKHIPSPVANAQKKARKISAATYTGDQTSSIATAMAKCDPLGPLMINVVKLYSTPDGQAFTALGRVYSGSVRTGQKVKVLGEAYSTQDEEDMAIKEVTAISISQGRTVMDINLAKAGNWVLLEGVDASIHKTATICDAEEGGVGGGEEAAIFRPLSFKTTPVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKVEESGEHVVLGTGELYMDCLMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEIDGPNILVDDTLPSEASESGTILREA-ESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPVFRVEVQAPADVVSAIYPALQRRRGHVVQDAPKPGAPFYTVKAFIPAIDSFGFETDLRAYTQGQAFCTQVFDHWNIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 1620
            LI  +F G ASGFVD++  H+PSP+ +A  K   I    YTG + SS    M  CDP G LMINVVKLYS PDG  F A GR+YSG+++ G  VKVLGEAYS  DEEDMA+ EVT ISI +GR  +D+  A AGNWV+++GVDA I+KTATI       V G ++A IFRPLSF TT V+KLAVEPLNP++LPK+VEGLR+ISKSYP   TKVEESGEHV+ GTGEL +DC+MHDLR MY+D EVK ADP TAFCETVVETS+LKCF+ETPNKRNKLTMIAEPLE GLA DIE GEVSI+WDRK LGEFFQ+KYDWDLLAARS+WAFGP+IDGPNILVDDTLPSE  +   +L++  ES+VQGFQWGCREGPLCDEPIRN KFKILDA IA EPIHRGGGQ+IPTARRVAYSAFLMATPRLMEPV  +++QAPADVVS+I+P L RRRGHVVQD PKPGAPFYT+KA++PAIDSFGFETDLRA+TQGQA C Q FDHW+IVPGDPLDR+I+LHPLEPSPP  LAR+FMV+
Sbjct:    1 LILHRFFGDASGFVDMLQHHVPSPIDSAASKVENI----YTGLRDSSCMADMTACDPSGALMINVVKLYSAPDGVTFHAFGRIYSGTLKVGDSVKVLGEAYSLDDEEDMAVCEVTGISIGEGRYRLDVERAGAGNWVMIQGVDAPINKTATITS-----VRGNDDATIFRPLSFNTTAVMKLAVEPLNPAELPKMVEGLRRISKSYPATATKVEESGEHVIFGTGELSLDCIMHDLRRMYSDIEVKTADPVTAFCETVVETSALKCFAETPNKRNKLTMIAEPLEEGLAEDIERGEVSIDWDRKQLGEFFQSKYDWDLLAARSVWAFGPDIDGPNILVDDTLPSEVDKK--LLKQVQESVVQGFQWGCREGPLCDEPIRNTKFKILDATIAPEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPVMELQIQAPADVVSSIFPVLARRRGHVVQDTPKPGAPFYTIKAYLPAIDSFGFETDLRAFTQGQAMCFQTFDHWSIVPGDPLDRSIVLHPLEPSPPPQLARDFMVK 519
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BLAST of mRNA_H-elongata_contig14088.2831.1 vs. uniprot
Match: A0A7S2WSH7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSH7_9STRA)

HSP 1 Score: 795 bits (2052), Expect = 1.790e-279
Identity = 387/540 (71.67%), Postives = 452/540 (83.70%), Query Frame = 1 
Query:    1 QFYLDPKPLLKLIFTKFLGSASGFVDVVAKHIPSPVANAQKKARKISAATYTGDQTSSIATAMAKCDPLGPLMINVVKLYSTPDGQAFTALGRVYSGSVRTGQKVKVLGEAYSTQDEEDMAIKEVTAISISQGRTVMDINLAKAGNWVLLEGVDASIHKTATICDAEEGGVGGGEEAAIFRPLSFKTTPVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKVEESGEHVVLGTGELYMDCLMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEIDGPNILVDDTLPSEASESGTILREAESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPVFRVEVQAPADVVSAIYPALQRRRGHVVQDAPKPGAPFYTVKAFIPAIDSFGFETDLRAYTQGQAFCTQVFDHWNIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 1620
            + +LDPKPLLKLI  +F G  SGFVD+VA+H+PSPV  A  K  ++    Y+G  +SS ATAM  CDP GPLM+NVVKLYSTP+G +F ALGRVYSG++R G +VKVLGEAYS  DEEDMA+ +VT +S+++GR  + ++ A+AGNWVL+ GVD  I KTATI  A      G  +  IF+PL F T PV+KLAVEPLNP++LPK+VEGLR+ISKSYPLA TKVEESGEHVVL TGEL +DC+MHDLR MY+D EVK ADP TAFCETVVETS+LKCF+ETPNKRNKLTMIAEPLE+GLA DIE GEV + WDRK LGEFFQ KYDWDLLAARSIWAFGP+  GPNILVDDTLPSE ++   + +  +S+VQGFQWGCREGPLCDEPIRN KFKIL+A IA EPIHRGGGQ+IPTARRVAYSAFLMATPRLMEPVF +++QAPADVVS+I+P L RRRGHVVQD PKPGAPFYT+KAF+PAIDSFGFETDLRA+TQGQA C Q FDHW+IV GDPLDR+I+LHPLEP+ PQ LAR+FM++
Sbjct:  389 EMHLDPKPLLKLIMGRFFGDTSGFVDMVARHVPSPVTGAAAKVDQV----YSGSMSSSCATAMKACDPAGPLMVNVVKLYSTPEGTSFHALGRVYSGTLRAGDQVKVLGEAYSLDDEEDMAVCQVTELSLAEGRYRIAVSEARAGNWVLIAGVDGPISKTATITGAR-----GPADVEIFKPLPFNTVPVLKLAVEPLNPAELPKMVEGLRRISKSYPLAGTKVEESGEHVVLATGELALDCIMHDLRRMYSDIEVKTADPVTAFCETVVETSALKCFAETPNKRNKLTMIAEPLEDGLAEDIERGEVDMGWDRKQLGEFFQTKYDWDLLAARSIWAFGPDTRGPNILVDDTLPSEVNKK-LLAQVRDSVVQGFQWGCREGPLCDEPIRNTKFKILEATIAQEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPVFELQIQAPADVVSSIFPVLARRRGHVVQDTPKPGAPFYTMKAFLPAIDSFGFETDLRAFTQGQAMCFQSFDHWSIVDGDPLDRSIVLHPLEPALPQQLARDFMIK 918
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BLAST of mRNA_H-elongata_contig14088.2831.1 vs. uniprot
Match: A0A812LP25_SYMMI (116 kDa U5 small nuclear ribonucleoprotein component n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812LP25_SYMMI)

HSP 1 Score: 780 bits (2013), Expect = 3.250e-273
Identity = 375/540 (69.44%), Postives = 448/540 (82.96%), Query Frame = 1 
Query:    1 QFYLDPKPLLKLIFTKFLGSASGFVDVVAKHIPSPVANAQKKARKISAATYTGDQTSSIATAMAKCDPLGPLMINVVKLYSTPDGQAFTALGRVYSGSVRTGQKVKVLGEAYSTQDEEDMAIKEVTAISISQGRTVMDINLAKAGNWVLLEGVDASIHKTATICDAEEGGVGGGEEAAIFRPLSFKTTPVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKVEESGEHVVLGTGELYMDCLMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEIDGPNILVDDTLPSEASESGTILREAESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPVFRVEVQAPADVVSAIYPALQRRRGHVVQDAPKPGAPFYTVKAFIPAIDSFGFETDLRAYTQGQAFCTQVFDHWNIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 1620
            + ++DPKPLL+++ ++F G   GFVD+V +HIPSP   A  K     A +YTG  +S  A  M KCDP GPL+INVVKL++TPDG  F +LGR+YSG++R GQ+VKVLGEAY+ +DEEDMAI EV A+ +  GR  ++IN AKAGNWVL+EG+DA I KTAT+ DA        E+ AIFRPL F +  V+KLAVEPL P++LPK+VEGLR+I+KSYP   TKVEESGEHV+ G+GEL MDC+MHDLR +Y+D EVKVADP  AFCETVVETSS+KCFSETPNKRNK+TM+AEPLE GLA DIE+G V I+W++K++GEFFQ+KY+WDLL+ARSIWAFGP+  GPNIL+DDTLPSE  ++  +    ES+VQGF+WGCREGPLCDEP+RNAKFKILDAVIA EPIHRGGGQ+IPTARR AYSAFLMATPRLMEPV+ VE+QAPAD V A+YP L RRRGHVVQDAPKPGAPFYTVKAFIP +DSFGFETDLR+YTQGQAFC Q+FDHW +V GDPLDRN+ILHPLEPSPP  LAR+FMV+
Sbjct:  415 EVHMDPKPLLRVVMSRFFGYPRGFVDMVVQHIPSPREAADAKI----ALSYTGYNSSEAAVGMRKCDPNGPLVINVVKLFNTPDGSKFLSLGRIYSGTIRAGQQVKVLGEAYTQEDEEDMAIVEVGALYVGAGRFSIEINSAKAGNWVLIEGIDAPIKKTATVTDAHT------EDIAIFRPLKFDSASVMKLAVEPLKPAELPKMVEGLRRINKSYPSVTTKVEESGEHVIFGSGELCMDCVMHDLRHLYSDIEVKVADPVAAFCETVVETSSIKCFSETPNKRNKITMLAEPLEEGLAADIEAGNVCIDWNKKSIGEFFQSKYNWDLLSARSIWAFGPDDCGPNILIDDTLPSEVDKTA-MASIRESVVQGFKWGCREGPLCDEPVRNAKFKILDAVIAGEPIHRGGGQIIPTARRAAYSAFLMATPRLMEPVYLVEIQAPADCVQAVYPVLARRRGHVVQDAPKPGAPFYTVKAFIPVMDSFGFETDLRSYTQGQAFCQQIFDHWAVVTGDPLDRNVILHPLEPSPPGALARDFMVK 943
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BLAST of mRNA_H-elongata_contig14088.2831.1 vs. uniprot
Match: W7TM02_9STRA (116 kDa U5 small nuclear ribonucleoprotein component n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM02_9STRA)

HSP 1 Score: 761 bits (1964), Expect = 1.650e-265
Identity = 364/540 (67.41%), Postives = 441/540 (81.67%), Query Frame = 1 
Query:    1 QFYLDPKPLLKLIFTKFLGSASGFVDVVAKHIPSPVANAQKKARKISAATYTGDQTSSIATAMAKCDPLGPLMINVVKLYSTPDGQAFTALGRVYSGSVRTGQKVKVLGEAYSTQDEEDMAIKEVTAISISQGRTVMDINLAKAGNWVLLEGVDASIHKTATICDAEEGGVGGGEEAAIFRPLSFKTTPVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKVEESGEHVVLGTGELYMDCLMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEIDGPNILVDDTLPSEASESGTILREAESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPVFRVEVQAPADVVSAIYPALQRRRGHVVQDAPKPGAPFYTVKAFIPAIDSFGFETDLRAYTQGQAFCTQVFDHWNIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 1620
            + +LDPKPLLKL+ +KFLG  +G VD++A+H+PSPV  A  K      A YTG Q S  A AM +CDP GPLM++VVKLYS PDG++F + GRVYSG++  GQ+V+VLGEAY+ +DEEDMA++EV ++SI QGR  ++++ A+ GNWVLLEGVD  I KTAT+ +A+     G +EAAIF+PL F   PV+KLAVEPLNP++LPK+VE LRKI KSYP A TKVEESGEHV+LGTGELY+DC+MHDLR ++A  EVKVADP  +FCETV ETSSL+CF+ETPNK+N+L MIAEPLE G+A DIE G VS +WDR+ +G+FF AKY WDLL AR+IWAFGP+  G N+L++DT+PSE  +   +    +SIVQGFQWGCREGPLCDEPIRN KFKILDA IA EP+HRGGGQVIPTARRVAYSAFL+ATP+LMEP F+VEVQ PAD V AI+  LQRRRGHV +D PKPG PFYTV+AF+PAIDSFGFETDLRAYTQGQAFC+QVFDHW  VPGDPLDR ++LHPLEP+P   LAR+FMV+
Sbjct:  425 ELHLDPKPLLKLVLSKFLGPPTGLVDMLARHVPSPVTAAAAKVE----AVYTGAQDSEAALAMKRCDPRGPLMLHVVKLYSAPDGESFQSFGRVYSGTITAGQQVRVLGEAYTLEDEEDMAVREVKSLSIGQGRYRLEVSTARPGNWVLLEGVDGPISKTATLIEAK-----GNDEAAIFKPLKFDVAPVLKLAVEPLNPAELPKMVEALRKIRKSYPAAQTKVEESGEHVILGTGELYLDCIMHDLRHLHASLEVKVADPVVSFCETVRETSSLRCFAETPNKQNQLHMIAEPLEAGIARDIEEGAVSTDWDRRAVGDFFHAKYGWDLLTARNIWAFGPDAQGANVLINDTMPSEVDQR-LLDNVKDSIVQGFQWGCREGPLCDEPIRNVKFKILDATIAPEPVHRGGGQVIPTARRVAYSAFLLATPQLMEPYFKVEVQCPADCVDAIHLVLQRRRGHVKEDRPKPGTPFYTVEAFLPAIDSFGFETDLRAYTQGQAFCSQVFDHWKEVPGDPLDREVVLHPLEPAPINSLARDFMVK 954
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BLAST of mRNA_H-elongata_contig14088.2831.1 vs. uniprot
Match: A0A812E5D0_SEPPH (EFTUD2 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812E5D0_SEPPH)

HSP 1 Score: 725 bits (1871), Expect = 2.260e-257
Identity = 348/537 (64.80%), Postives = 424/537 (78.96%), Query Frame = 1 
Query:   10 LDPKPLLKLIFTKFLGSASGFVDVVAKHIPSPVANAQKKARKISAATYTGDQTSSIATAMAKCDPLGPLMINVVKLYSTPDGQAFTALGRVYSGSVRTGQKVKVLGEAYSTQDEEDMAIKEVTAISISQGRTVMDINLAKAGNWVLLEGVDASIHKTATICDAEEGGVGGGEEAAIFRPLSFKTTPVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKVEESGEHVVLGTGELYMDCLMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEIDGPNILVDDTLPSEASESGTILREAESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPVFRVEVQAPADVVSAIYPALQRRRGHVVQDAPKPGAPFYTVKAFIPAIDSFGFETDLRAYTQGQAFCTQVFDHWNIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 1620
            ++ +PLL+L+  +F G+ +GFVD+  +H+PSP ANA  K   +    YTG   + +A AM +CD  GPLMI+  KLY TPD  +F  LGR+ SG++   Q+V++LGE YS QDEED     V  + I++ R  +++N   AGNW+L+EG+D SI KT+TI +     V G EE  IFRP+ F T+ VIK+AVEP+NPS+LPK+++GLRK++KSYPL +TKVEESGEH++LGTGELY+DC+MHDLR MY++ ++KVADP  +FCETVVETSSLKCF+ETPNK+NK+TMIAEPLE GLA DIE+  V I W RK LGEFFQ KYDWDLLAARSIWAFGP+  GPNILVDDTLPSE  ++  ++   +SIVQGFQW  REGPLCDEPIRN KFKILDAVIA EPIHRGGGQ+IPTARRVAYSAFLMATPR+MEP + VEV APAD VSA+Y  L RRRGHV QDAP PG+P YT+KAFIPAIDSFGFETDLR +TQGQAFC  VF HW IVPGDPLD++II+ PLEP P  HLAREFM++
Sbjct:   34 INVRPLLRLVMKRFFGAFTGFVDMCVEHVPSPAANAHTKVEHV----YTGSMETELAEAMVQCDADGPLMIHTTKLYPTPDATSFHVLGRIMSGTLHANQEVRILGENYSLQDEEDSRFGMVGRLWIAEARYKIEVNRVPAGNWILIEGIDQSIVKTSTITE-----VSGPEEIYIFRPIKFNTSSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLNTKVEESGEHIILGTGELYLDCVMHDLRKMYSEIDIKVADPVVSFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWPRKRLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKN-LLIAVKDSIVQGFQWATREGPLCDEPIRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRMMEPYYFVEVMAPADCVSAVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIIIRPLEPQPATHLAREFMIK 560
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BLAST of mRNA_H-elongata_contig14088.2831.1 vs. uniprot
Match: A0A7J9B2S9_9ROSI (Uncharacterized protein n=1 Tax=Gossypium laxum TaxID=34288 RepID=A0A7J9B2S9_9ROSI)

HSP 1 Score: 723 bits (1865), Expect = 1.180e-254
Identity = 358/539 (66.42%), Postives = 422/539 (78.29%), Query Frame = 1 
Query:    4 FYLDPKPLLKLIFTKFLGSASGFVDVVAKHIPSPVANAQKKARKISAATYTGDQTSSIATAMAKCDPLGPLMINVVKLYSTPDGQAFTALGRVYSGSVRTGQKVKVLGEAYSTQDEEDMAIKEVTAISISQGRTVMDINLAKAGNWVLLEGVDASIHKTATICDAEEGGVGGGEEAAIFRPLSFKTTPVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKVEESGEHVVLGTGELYMDCLMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEIDGPNILVDDTLPSEASESGTILREAESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPVFRVEVQAPADVVSAIYPALQRRRGHVVQDAPKPGAPFYTVKAFIPAIDSFGFETDLRAYTQGQAFCTQVFDHWNIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 1620
            + L+ +PLL+L  +   GSASGF D++ +HIPSP   A KK       TYTG + S I  AM  CDP GPLM+NV KLY   D   F A GRVYSG ++TGQ ++VLGE YS  DEEDM IKEVT + I Q R  + I+ A  G+WVL+EGVDASI KTAT+C+ +       E+  IFRPL F T PV+K A EPLNPS+LPK+VEGLRKISKSYPLA TKVEESGEH +LGTGELY+D +M DLR +Y++ EVKVADP  +FCETVVE+SS+KCF+ETPNK+NK+TMIAEPLE GLA DIE+G VS++W RK LG+FF+ KYDWDLLAARSIWAFGP+  GPNIL+DDTLP+E  + G +    +SIVQGFQWG REGPLCDEPIRN KFKI+DA IA+EP+HRG GQ+IPTARRVAYSAFLMATPRLMEPV+ VE+Q P D VSAIY  L RRRGHV  D P+PG P Y VKAF+P I+SFGFETDLR +TQGQAFC  VFDHW IVPGDPLD++I+L PLEP+P QHLAREFMV+
Sbjct:  149 YKLNVRPLLRLACSTVFGSASGFTDLLVQHIPSPKDAAAKKVDH----TYTGPKHSMIYKAMVGCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGRIQTGQSLRVLGEGYSPDDEEDMTIKEVTKLWIYQARYRIPISSAPPGSWVLIEGVDASIMKTATLCNMDL-----DEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSVDWSRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEV-DKGLLGSVRDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIASEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVK 677
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BLAST of mRNA_H-elongata_contig14088.2831.1 vs. uniprot
Match: UPI0014256FB7 (116 kDa U5 small nuclear ribonucleoprotein component-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014256FB7)

HSP 1 Score: 732 bits (1889), Expect = 1.510e-254
Identity = 365/540 (67.59%), Postives = 426/540 (78.89%), Query Frame = 1 
Query:    1 QFYLDPKPLLKLIFTKFLGSASGFVDVVAKHIPSPVANAQKKARKISAATYTGDQTSSIATAMAKCDPLGPLMINVVKLYSTPDGQAFTALGRVYSGSVRTGQKVKVLGEAYSTQDEEDMAIKEVTAISISQGRTVMDINLAKAGNWVLLEGVDASIHKTATICDAEEGGVGGGEEAAIFRPLSFKTTPVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKVEESGEHVVLGTGELYMDCLMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEIDGPNILVDDTLPSEASESGTILREAESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPVFRVEVQAPADVVSAIYPALQRRRGHVVQDAPKPGAPFYTVKAFIPAIDSFGFETDLRAYTQGQAFCTQVFDHWNIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 1620
            +  L+ +P+LKLI +KF G  +GFVD+  +HIPSPV  A+ K   +    YTG   S +A AM  CD  GPLM++  K+YST DG +F   GRV SG++ + Q+VKVLGE YS  DEED  I  V  + I++ R  +++N   AGNWVLLEGVD  I KT+TI + +     G EEA IFRPL F T+ VIK+AVEP+NPS+LPK+++GLRKI+KSYPL  TKVEESGEHVV+GTGELY+DC+MHDLR MY++ ++KVADP  +FCETVVETSSLKCF+ETPNKRNKLTMIAEPLE GLA DIE+  V I W+RK LGEFFQ KYDWDLLAARSIWAFGP+  GPNILVDDTLPSE  + G +    +SIVQGFQWG REGPLCDEPIRN KFKILDAVIA+EPI+RGGGQ+IPTARRVAYSAFLMATPRLMEP   VEVQAPAD VSA+Y  L RRRGHV QDAP PG+P YT+KAFIPAIDSFGFETDLR +TQGQAFC  VF HW IVPGDPLDRNII+ PLEP P  HLAREFM++
Sbjct:  408 EMKLNIRPILKLICSKFFGDFTGFVDMCVEHIPSPVMAAKNKVEHV----YTGPSDSDLAEAMIDCDSEGPLMLHTTKMYSTEDGVSFHTFGRVMSGTIHSNQEVKVLGENYSLDDEEDSRITLVGRLWIAEARYKIEVNRVPAGNWVLLEGVDEPIVKTSTITECK-----GVEEAHIFRPLKFNTSSVIKIAVEPVNPSELPKMLDGLRKINKSYPLITTKVEESGEHVVMGTGELYLDCVMHDLRKMYSEIDIKVADPVVSFCETVVETSSLKCFAETPNKRNKLTMIAEPLEKGLAEDIENEVVQIGWNRKRLGEFFQTKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEV-DKGLLNSVKDSIVQGFQWGTREGPLCDEPIRNVKFKILDAVIASEPINRGGGQIIPTARRVAYSAFLMATPRLMEPYNFVEVQAPADCVSAVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDRNIIIRPLEPQPATHLAREFMIK 937
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BLAST of mRNA_H-elongata_contig14088.2831.1 vs. uniprot
Match: A0A7L3B3Z4_9AVES (U5S1 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7L3B3Z4_9AVES)

HSP 1 Score: 717 bits (1852), Expect = 6.490e-254
Identity = 357/542 (65.87%), Postives = 420/542 (77.49%), Query Frame = 1 
Query:    1 QFYLDPKPLLKLIFTKFLGSASGFVDVVAKHIPSPVANAQKKARKISAATYTGDQTSSIATAMAKCDPLGPLMINVVKLYSTPDGQAFTALGRVYSGSVRTGQKVKVLGEAYSTQDEEDMAIKEVTAISISQGRTVMDINLAKAGNWVLLEGVDASIHKTATICDAEEGGVGGGEEAAIFRPLSFKTTPVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKVEESGEHVVLGTGELYMDCLMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEIDGPNILVDDTLPSEASES--GTILREAESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPVFRVEVQAPADVVSAIYPALQRRRGHVVQDAPKPGAPFYTVKAFIPAIDSFGFETDLRAYTQGQAFCTQVFDHWNIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 1620
            +  L+ +PLL+L+  KF G  +GFVD+  +HIPSP   A+ K       TYTG   S +  AM++CDP GPLM +  K+YST DG  F A GRV SG++  GQ VKVLGE Y+ +DEED  I  V  + IS  R  +++N   AGNWVL+EGVD  I KTAT+ +       G EEA IFRPL F TT VIK+AVEP+NPS+LPK+++GLRK++KSYP   TKVEESGEHV+LGTGELY+DC+MHDLR MY++ ++KVADP   FCETVVETSSLKCF+ETPNK+NK+TMIAEPLE GLA DIE+  V I W+RK LGEFFQ KYDWDLLAARSIWAFGP+  GPNILVDDTLPSE  +S  G++    +SIVQGFQWG REGPLCDE IRN KFKILDAVIA EP+HRGGGQ+IPTARRV YSAFLMATPRLMEP + VEVQAPAD VSA+Y  L RRRGHV QDAP PG+P YT+KAFIPAIDSFGFETDLR +TQGQAF   VF HW IVPGDPLD++I++ PLEP P  HLAREFM++
Sbjct:   68 ELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKTKIEH----TYTGGVDSDLGEAMSECDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATVTEPR-----GNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVK---DSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIK 597
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14088.2831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L308_9PHAE0.000e+086.11Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z8L8_9STRA4.950e-28472.22GTPase of the U5 snRNP particle n=1 Tax=Tribonema ... [more]
A0A7S2CQL7_9STRA2.800e-28172.45Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2WSH7_9STRA1.790e-27971.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812LP25_SYMMI3.250e-27369.44116 kDa U5 small nuclear ribonucleoprotein compone... [more]
W7TM02_9STRA1.650e-26567.41116 kDa U5 small nuclear ribonucleoprotein compone... [more]
A0A812E5D0_SEPPH2.260e-25764.80EFTUD2 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=... [more]
A0A7J9B2S9_9ROSI1.180e-25466.42Uncharacterized protein n=1 Tax=Gossypium laxum Ta... [more]
UPI0014256FB71.510e-25467.59116 kDa U5 small nuclear ribonucleoprotein compone... [more]
A0A7L3B3Z4_9AVES6.490e-25465.87U5S1 protein (Fragment) n=3 Tax=Neognathae TaxID=8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14088contigH-elongata_contig14088:3292..8148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1013.1
Seed ortholog evalue5e-293
Seed eggNOG ortholog2880.D8LIZ9
Preferred nameEF-TU
KEGG koko:K12852
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000003,GO:0000166,GO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000974,GO:0001672,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009506,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010154,GO:0010467,GO:0010847,GO:0015030,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030312,GO:0030532,GO:0031445,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033043,GO:0033044,GO:0034622,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045694,GO:0046483,GO:0046540,GO:0048316,GO:0048367,GO:0048437,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051239,GO:0055044,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0097525,GO:0097526,GO:0099402,GO:0120114,GO:1901265,GO:1901360,GO:1901363,GO:1902275,GO:1902494,GO:1902802,GO:1990904,GO:2000026,GO:2000241
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0480@1,KOG0468@2759
Ec32 ortholog descriptionSnu114, GTPase of the U5 snRNP particle
Ec32 orthologEc-20_002150.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons11
Model size1620
Cds size1620
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.9208636-CDS-H-elongata_contig14088:3291..34371622929836.9208636-CDS-H-elongata_contig14088:3291..3437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 3292..3437 +
1691679177.495491-CDS-H-elongata_contig14088:3291..34371691679177.495491-CDS-H-elongata_contig14088:3291..3437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 3292..3437 +
1622929836.933836-CDS-H-elongata_contig14088:3907..40791622929836.933836-CDS-H-elongata_contig14088:3907..4079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 3908..4079 +
1691679177.5098941-CDS-H-elongata_contig14088:3907..40791691679177.5098941-CDS-H-elongata_contig14088:3907..4079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 3908..4079 +
1622929836.94997-CDS-H-elongata_contig14088:4270..43531622929836.94997-CDS-H-elongata_contig14088:4270..4353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 4271..4353 +
1691679177.5175662-CDS-H-elongata_contig14088:4270..43531691679177.5175662-CDS-H-elongata_contig14088:4270..4353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 4271..4353 +
1622929836.9660356-CDS-H-elongata_contig14088:4630..47961622929836.9660356-CDS-H-elongata_contig14088:4630..4796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 4631..4796 +
1691679177.5248625-CDS-H-elongata_contig14088:4630..47961691679177.5248625-CDS-H-elongata_contig14088:4630..4796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 4631..4796 +
1622929836.9806454-CDS-H-elongata_contig14088:5101..52031622929836.9806454-CDS-H-elongata_contig14088:5101..5203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 5102..5203 +
1691679177.5385041-CDS-H-elongata_contig14088:5101..52031691679177.5385041-CDS-H-elongata_contig14088:5101..5203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 5102..5203 +
1622929836.9977956-CDS-H-elongata_contig14088:5447..55431622929836.9977956-CDS-H-elongata_contig14088:5447..5543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 5448..5543 +
1691679177.5532138-CDS-H-elongata_contig14088:5447..55431691679177.5532138-CDS-H-elongata_contig14088:5447..5543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 5448..5543 +
1622929837.014077-CDS-H-elongata_contig14088:5992..61481622929837.014077-CDS-H-elongata_contig14088:5992..6148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 5993..6148 +
1691679177.562889-CDS-H-elongata_contig14088:5992..61481691679177.562889-CDS-H-elongata_contig14088:5992..6148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 5993..6148 +
1622929837.0331125-CDS-H-elongata_contig14088:6583..67621622929837.0331125-CDS-H-elongata_contig14088:6583..6762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 6584..6762 +
1691679177.5731091-CDS-H-elongata_contig14088:6583..67621691679177.5731091-CDS-H-elongata_contig14088:6583..6762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 6584..6762 +
1622929837.0492828-CDS-H-elongata_contig14088:7204..73371622929837.0492828-CDS-H-elongata_contig14088:7204..7337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 7205..7337 +
1691679177.5836542-CDS-H-elongata_contig14088:7204..73371691679177.5836542-CDS-H-elongata_contig14088:7204..7337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 7205..7337 +
1622929837.0654504-CDS-H-elongata_contig14088:7582..78371622929837.0654504-CDS-H-elongata_contig14088:7582..7837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 7583..7837 +
1691679177.5978737-CDS-H-elongata_contig14088:7582..78371691679177.5978737-CDS-H-elongata_contig14088:7582..7837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 7583..7837 +
1622929837.0781062-CDS-H-elongata_contig14088:8016..81481622929837.0781062-CDS-H-elongata_contig14088:8016..8148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 8017..8148 +
1691679177.606907-CDS-H-elongata_contig14088:8016..81481691679177.606907-CDS-H-elongata_contig14088:8016..8148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 8017..8148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14088.2831.1prot_H-elongata_contig14088.2831.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14088 3292..8148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14088.2831.1

>prot_H-elongata_contig14088.2831.1 ID=prot_H-elongata_contig14088.2831.1|Name=mRNA_H-elongata_contig14088.2831.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=540bp
QFYLDPKPLLKLIFTKFLGSASGFVDVVAKHIPSPVANAQKKARKISAAT
YTGDQTSSIATAMAKCDPLGPLMINVVKLYSTPDGQAFTALGRVYSGSVR
TGQKVKVLGEAYSTQDEEDMAIKEVTAISISQGRTVMDINLAKAGNWVLL
EGVDASIHKTATICDAEEGGVGGGEEAAIFRPLSFKTTPVIKLAVEPLNP
SDLPKLVEGLRKISKSYPLAHTKVEESGEHVVLGTGELYMDCLMHDLRVM
YADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLA
VDIESGEVSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEIDGPNILVD
DTLPSEASESGTILREAESIVQGFQWGCREGPLCDEPIRNAKFKILDAVI
AAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPVFRVEVQAPADVVSAI
YPALQRRRGHVVQDAPKPGAPFYTVKAFIPAIDSFGFETDLRAYTQGQAF
CTQVFDHWNIVPGDPLDRNIILHPLEPSPPQHLAREFMVR
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mRNA from alignment at H-elongata_contig14088:3292..8148+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14088.2831.1 ID=mRNA_H-elongata_contig14088.2831.1|Name=mRNA_H-elongata_contig14088.2831.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4857bp|location=Sequence derived from alignment at H-elongata_contig14088:3292..8148+ (Himanthalia elongata Himel1 dioecious)
CAGTTCTACCTGGACCCCAAGCCCCTGCTGAAGCTAATATTCACCAAGTT
CCTCGGATCGGCGTCCGGCTTCGTAGACGTGGTGGCGAAGCACATTCCTT
CGCCGGTGGCGAACGCCCAGAAGAAGGCGAGAAAAATCTCGGCGGCGTCT
CGAATTGGAAGGCTCCGGATATACGGCCATGCTGCCACGCGTCCAGGATC
GTTTTACAGACTCGTTTCGCGCGTTCAGATTTCGTCTGACGGTGGTCGCG
ATCGCGCGCGAAGCCAAGTCTCAATTTCGCTTGTCTGTACTGTCCTGGTT
GTTGTGGACTCAAACGAGCTACAGCCACAGTACTCAAACGTGGGCATGGT
GTGCTCCAGCGGTTGGGACCCAAGTACCGAATATGTGTTCGAAAAGCAGT
ACGGATTCGAGATATTCTGTTTGCACCGCTTGTAAAACAAATCCGATATC
TCTCGTTTCTCTTGCTTCGTAGCTTAGCGTTGTCTCGCGTCGCGCCAGTG
CGACATCCGCCCGAGCACGATGACGATGAGCTACACCCGCCCCCAAAATC
TATAACCCCGTAACCCTCAACCATCAACTCCTCCCCCCGCCTCCTCTCCT
ACCCTAAGGTGCTGAGGACTTACACGGGCGACCAGACCTCTTCCATTGCC
ACTGCTATGGCCAAGTGTGATCCCCTTGGTCCCCTCATGATCAACGTCGT
GAAGCTCTACTCGACGCCGGACGGTCAGGCGTTTACCGCCTTGGGCAGGG
TGTACAGCGGTTCGGTGCGGACGGGGCAGAAGGTCAAGGTAAGTCAGGGG
AGGGGAGGGTTGGATTCAGTCCCGGAGGCATTTTTTAGTGTAGACCGTAA
CCCGTTTATGTTGGGGTGTTTTGATATCGCTCTTCAAGTAAGTCTTGTAT
ACAGAGAGCGAACGTTATGTTTGTATATTCTCTCTATATGTTATTACACC
GTTATCGTGTGGTCCCCGTCGCAAAATAGGTGCTCGGGGAAGCGTACTCC
ACGCAGGACGAGGAGGATATGGCGATCAAGGAGGTGACGGCCATCAGCAT
CAGCCAGGGCAGGTGCAAAAGCTTTTCAAGGCGCACTTTATCGAGGGCTT
TGTAGTGTAGTTTCGAGCTTTAAAAATGCGATCCCGCTCACAGCAATGCA
ATACCTACACACATGCATCACAGTGGTCGAGGTAGCGCAACCGCAATGAT
TTTCGCGGACAGAAGGAAGATAGGGAAAACTCGTCTAGTCTTTCTGTTCT
CAGTAGTATACTACCGGTGTCACATGTACCCTGTTTTCTCTCTCTCTATT
TCGTATATATTTTATTCTTTTTCTCAACAACCGTGCAAGGACTGTAATGG
ACATCAACCTGGCCAAGGCTGGCAACTGGGTGCTCTTGGAGGGCGTCGAC
GCTTCGATCCACAAGACGGCCACTATCTGCGACGCGGAGGAGGGGGGAGT
TGGAGGGGGCGAGGAGGCGGCAATCTTCCGGCCGTTGTCATTCAAAACCA
CTCCGGTGAGAACCGACTGCGATAGTAAGCAGGGGGGGGAGGTCTTGGTC
CCCGCGATGTTTTCGTTCCTTTGTTTTCCCTGGTATATATGTTTCCCCGA
TTCACGAATCGAGTCAAGCATGCGCGCGGTGTGACTCACCCCAGAAAATC
TGACGTTCGGTCGTGGGCACCGACAAGCGTGTGTTGACCTTAATATGTAT
AGTTACAAAATCCCAAGGGCCGTTGTTTCGTTGGTTAAAAATATAATCCC
CGAGGTTACTTGTTGGCCTGATTTCTGCAGCGTCCTCCGACTCCTACCAC
GACCCAACAGGTCATCAAGTTAGCGGTGGAACCCCTGAATCCCTCCGACC
TGCCTAAGCTCGTGGAGGGACTACGCAAGATCAGCAAGAGCTACCCGCTG
GCGCACACAAAGGTTAGAAGATAAAGAAAAAAGCTCGAAACTCGCCGAAG
CGAGAGAGACTTTTAACTTTTTTATGTCCCCACCCCGCAAAAAAAATAAC
CCCCTTCCCCGCACCGTACATTTTTTGTTCAATTCTACTGTTCGATTCTA
GATTGATTATGGGTGCTGACTCTAGAAAGCCGTCGGCTGCTTTTACCATC
TCTCGCGATGTCGCGAACCCTCTCGTGGCTCTGGCTCGTGGCCTCTCTTC
CGGCAGGTGGAGGAATCTGGAGAGCACGTGGTCTTGGGAACGGGGGAACT
TTACATGGACTGCCTCATGCACGATCTTCGAGTCATGTACGCAGATGCCG
AGGTAAGCAGTCTCACATACTATTGGTAGCTAGCTCTACATTATGTTGCC
ATTTACTCCCAGGATCACACTTCCAGTCAGCGTGCTTCGAAGCGGTGCTT
TTTTATAGCACGGTGCTTTTTTTAATTATTTTTTTGCGTTTTTCGGGAAG
GCTCGTGTCTTTTTACGCCCGTCATAGGATTGGTTGCTTCTACACACCGC
CTTCGCATGCACACGTTTTGAAGGCTTGTGTTGGTAGAATAAAAAAATCC
CCACGCATCTCTAGAAAGACCCCCTCCCCCCGTCATCGTCATCCCTAATT
CACCGGCGGCATTCCTGAACACTATCCGCACAATACGAGGGGTATGCTTC
CAAACGACATCGCTTACCTCTAAGCCCGTTATGTCCTGGATGACCGAACT
GAACATCTTCCGCCCGGCGCGGTTCCACTCTGATCCGCCTCACCACGGCA
GGTGAAGGTGGCGGATCCATCGACGGCGTTCTGTGAGACGGTAGTGGAGA
CCTCGAGCCTCAAGTGTTTTTCGGAGACTCCCAACAAGCGGAACAAGCTC
ACGATGATTGCGGAGCCGCTCGAGAACGGCCTTGCGGTGGACATCGAGTC
GGGAGAGGTAATATAAGATGATATACGATGAGATAAGATGGACCACTGCT
TGCTAGTAGAAATTCAAGTCTGCTATCCTGTATTATATGAAACGACGTTG
TTGCGGGCCGGTGGTTTGGTGGCAGAGGGTAGGGGCGGGGAAGGAGTAGC
AGAAGGCGGGGAGGTACTCTTTGTATGGCTGGACGTTATTTCAACGACTG
GCGCCTAGGATATTACCGCATTCTTCGTGCCGTTTTATGCAGCGGAGCGC
TCTTGTTTCGTGTTATCTTGGAATTGTATCTTCGGAGGGAACCCTGTGGA
TCCCGGGGGGGTGAGGCAAGATCTGGTAATGGTAAAGTAAAGTGTCATTA
TAGTATAGAATAGGGTTTTGTCGAATAACCCGTCGGCTTTATAACTTGTT
TCCGTGTCCGGCTGGTGCCGGCCGGGCGTAACCGTAAAAAAGGTGAGCAT
CGAGTGGGACAGGAAAACGCTGGGCGAGTTTTTTCAGGCCAAGTACGACT
GGGACCTGCTTGCTGCCAGATCTATCTGGGCGTTCGGGCCCGAGATCGAC
GGGCCCAACATCCTCGTGGACGACACCCTTCCCAGCGAGGCGAGCGAGAG
CGGAACAATCTTGCGGGAGGCGTTTTTATCCATCATTTTCTCACCCGCGC
CTAGAGCAAGAGGAGAGTAGTGTTAATTCTTTCTTGGGCGTATATAGGCT
TGAATAAATTCGAAGACTTGAAGCTTGCGGCGAGATGTAATGACGGACTC
TTTGTTGTTCCCGTGGGTCAGGCGTTAGACCACGAGCAGAGGAGACGGCG
GCATCGCTACGGTGCTCTTTCCTTTTTTATGTTGTTCGGAGCGTTTTACG
TTACGCTTGCGAGGCTCAGTCGGTCACGCAAAAGACACGGGTACGGGGGC
AGGTGTGCAGACATAAAACGCGATCTCACTAATGAAAACATCCTCGTTAA
GCACATTTCGTAATATGCCCCTTCCTTCCCCACCCCTTATCATGCCCCTT
CATATGTCCCTTCCTCCCTCCCTCCGACCGACAGGTGGACAAAAATCGTT
TGAACGCGTGCAGAGAGAGCATTGTCCAGGGCTTCCAGTGGGGTTGCCGA
GAGGGTCCTCTCTGCGACGAGCCCATTCGGAACGCCAAGTTCAAGATCCT
TGACGCCGTCATCGCGGCGGAACCGATCCACCGGGGAGGTGGTCAGGTGT
GTTTTCCGGTATCTCACGCCACCCTTCACCCTCTCCAAAAGCGAAGTTAT
TTTTAATCTCGATAAGCAGAATGGATTGTGGGTATTTGTATGGCGACGCC
ACCACATCCGTTCATACCGCCTGTGACTCTTACGGTGACCGACTGTCGTC
CAGCACTATTAATGTCATTTTTGACTGCTGTTGCCGCTCAACACCATTTT
GCCGTCGTTGTTTACACTCGCTGCGGCGTCGACCGACGAAGGTGATTCCC
ACCGCGAGGCGCGTGGCGTACTCGGCCTTCCTCATGGCCACGCCTCGCCT
GATGGAGCCAGTGTTTAGGGTGGAGGTGCAGGCACCGGCAGACGTTGTGT
CGGCGATCTATCCCGCTCTCCAGAGAAGGAGAGGGCACGTGGTGCAAGAT
GCGCCCAAGCCAGGAGCGCCGTTTTACACGGTCAAGGCATTCATCCCCGC
CATCGACTCGTTCGGCTTCGAGACGGACTTGCGCGCGTATACGCAGGTCG
GCGGGCCTTGTGTCGAAACGCCTTTTTATCCCTCCTTTGTATAGACCAGA
GGCAGGAGTGAAGCTGCTGCTGCTCCGATCTGTCAAAGCCAGCGTTACGA
CTGCTGCCCTGTAGGATCTTCGCGCCTCGCAATCCGCGACTCTGAACGAT
GCCCGAATTTTCCCTCCTTAAACAGGGGCAAGCGTTTTGCACGCAAGTCT
TCGACCACTGGAACATCGTGCCTGGCGATCCGTTGGACCGCAACATTATC
CTGCATCCGCTGGAGCCGTCCCCGCCGCAGCACCTTGCGAGGGAGTTCAT
GGTGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig14088:3292..8148+

>mRNA_H-elongata_contig14088.2831.1 ID=mRNA_H-elongata_contig14088.2831.1|Name=mRNA_H-elongata_contig14088.2831.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3240bp|location=Sequence derived from alignment at H-elongata_contig14088:3292..8148+ (Himanthalia elongata Himel1 dioecious)
CAGTTCTACCTGGACCCCAAGCCCCTGCTGAAGCTAATATTCACCAAGTT
CCTCGGATCGGCGTCCGGCTTCGTAGACGTGGTGGCGAAGCACATTCCTT
CGCCGGTGGCGAACGCCCAGAAGAAGGCGAGAAAAATCTCGGCGGCCAGT
TCTACCTGGACCCCAAGCCCCTGCTGAAGCTAATATTCACCAAGTTCCTC
GGATCGGCGTCCGGCTTCGTAGACGTGGTGGCGAAGCACATTCCTTCGCC
GGTGGCGAACGCCCAGAAGAAGGCGAGAAAAATCTCGGCGGCGACTTACA
CGGGCGACCAGACCTCTTCCATTGCCACTGCTATGGCCAAGTGTGATCCC
CTTGGTCCCCTCATGATCAACGTCGTGAAGCTCTACTCGACGCCGGACGG
TCAGGCGTTTACCGCCTTGGGCAGGGTGTACAGCGGTTCGGTGCGGACGG
GGCAGAAGGTCAAGGACTTACACGGGCGACCAGACCTCTTCCATTGCCAC
TGCTATGGCCAAGTGTGATCCCCTTGGTCCCCTCATGATCAACGTCGTGA
AGCTCTACTCGACGCCGGACGGTCAGGCGTTTACCGCCTTGGGCAGGGTG
TACAGCGGTTCGGTGCGGACGGGGCAGAAGGTCAAGGTGCTCGGGGAAGC
GTACTCCACGCAGGACGAGGAGGATATGGCGATCAAGGAGGTGACGGCCA
TCAGCATCAGCCAGGGCAGGTGCTCGGGGAAGCGTACTCCACGCAGGACG
AGGAGGATATGGCGATCAAGGAGGTGACGGCCATCAGCATCAGCCAGGGC
AGGACTGTAATGGACATCAACCTGGCCAAGGCTGGCAACTGGGTGCTCTT
GGAGGGCGTCGACGCTTCGATCCACAAGACGGCCACTATCTGCGACGCGG
AGGAGGGGGGAGTTGGAGGGGGCGAGGAGGCGGCAATCTTCCGGCCGTTG
TCATTCAAAACCACTCCGGACTGTAATGGACATCAACCTGGCCAAGGCTG
GCAACTGGGTGCTCTTGGAGGGCGTCGACGCTTCGATCCACAAGACGGCC
ACTATCTGCGACGCGGAGGAGGGGGGAGTTGGAGGGGGCGAGGAGGCGGC
AATCTTCCGGCCGTTGTCATTCAAAACCACTCCGGTCATCAAGTTAGCGG
TGGAACCCCTGAATCCCTCCGACCTGCCTAAGCTCGTGGAGGGACTACGC
AAGATCAGCAAGAGCTACCCGCTGGCGCACACAAAGGTCATCAAGTTAGC
GGTGGAACCCCTGAATCCCTCCGACCTGCCTAAGCTCGTGGAGGGACTAC
GCAAGATCAGCAAGAGCTACCCGCTGGCGCACACAAAGGTGGAGGAATCT
GGAGAGCACGTGGTCTTGGGAACGGGGGAACTTTACATGGACTGCCTCAT
GCACGATCTTCGAGTCATGTACGCAGATGCCGAGGTGGAGGAATCTGGAG
AGCACGTGGTCTTGGGAACGGGGGAACTTTACATGGACTGCCTCATGCAC
GATCTTCGAGTCATGTACGCAGATGCCGAGGTGAAGGTGGCGGATCCATC
GACGGCGTTCTGTGAGACGGTAGTGGAGACCTCGAGCCTCAAGTGTTTTT
CGGAGACTCCCAACAAGCGGAACAAGCTCACGATGATTGCGGAGCCGCTC
GAGAACGGCCTTGCGGTGGACATCGAGTCGGGAGAGGTGAAGGTGGCGGA
TCCATCGACGGCGTTCTGTGAGACGGTAGTGGAGACCTCGAGCCTCAAGT
GTTTTTCGGAGACTCCCAACAAGCGGAACAAGCTCACGATGATTGCGGAG
CCGCTCGAGAACGGCCTTGCGGTGGACATCGAGTCGGGAGAGGTGAGCAT
CGAGTGGGACAGGAAAACGCTGGGCGAGTTTTTTCAGGCCAAGTACGACT
GGGACCTGCTTGCTGCCAGATCTATCTGGGCGTTCGGGCCCGAGATCGAC
GGGCCCAACATCCTCGTGGACGACACCCTTCCCAGCGAGGCGAGCGAGAG
CGGAACAATCTTGCGGGAGGCGTGAGCATCGAGTGGGACAGGAAAACGCT
GGGCGAGTTTTTTCAGGCCAAGTACGACTGGGACCTGCTTGCTGCCAGAT
CTATCTGGGCGTTCGGGCCCGAGATCGACGGGCCCAACATCCTCGTGGAC
GACACCCTTCCCAGCGAGGCGAGCGAGAGCGGAACAATCTTGCGGGAGGC
AGAGAGCATTGTCCAGGGCTTCCAGTGGGGTTGCCGAGAGGGTCCTCTCT
GCGACGAGCCCATTCGGAACGCCAAGTTCAAGATCCTTGACGCCGTCATC
GCGGCGGAACCGATCCACCGGGGAGGTGGTCAGAGAGAGCATTGTCCAGG
GCTTCCAGTGGGGTTGCCGAGAGGGTCCTCTCTGCGACGAGCCCATTCGG
AACGCCAAGTTCAAGATCCTTGACGCCGTCATCGCGGCGGAACCGATCCA
CCGGGGAGGTGGTCAGGTGATTCCCACCGCGAGGCGCGTGGCGTACTCGG
CCTTCCTCATGGCCACGCCTCGCCTGATGGAGCCAGTGTTTAGGGTGGAG
GTGCAGGCACCGGCAGACGTTGTGTCGGCGATCTATCCCGCTCTCCAGAG
AAGGAGAGGGCACGTGGTGCAAGATGCGCCCAAGCCAGGAGCGCCGTTTT
ACACGGTCAAGGCATTCATCCCCGCCATCGACTCGTTCGGCTTCGAGACG
GACTTGCGCGCGTATACGCAGGTGATTCCCACCGCGAGGCGCGTGGCGTA
CTCGGCCTTCCTCATGGCCACGCCTCGCCTGATGGAGCCAGTGTTTAGGG
TGGAGGTGCAGGCACCGGCAGACGTTGTGTCGGCGATCTATCCCGCTCTC
CAGAGAAGGAGAGGGCACGTGGTGCAAGATGCGCCCAAGCCAGGAGCGCC
GTTTTACACGGTCAAGGCATTCATCCCCGCCATCGACTCGTTCGGCTTCG
AGACGGACTTGCGCGCGTATACGCAGGGGCAAGCGTTTTGCACGCAAGTC
TTCGACCACTGGAACATCGTGCCTGGCGATCCGTTGGACCGCAACATTAT
CCTGCATCCGCTGGAGCCGTCCCCGCCGCAGCACCTTGCGAGGGAGTTCA
TGGTGCGTGGGCAAGCGTTTTGCACGCAAGTCTTCGACCACTGGAACATC
GTGCCTGGCGATCCGTTGGACCGCAACATTATCCTGCATCCGCTGGAGCC
GTCCCCGCCGCAGCACCTTGCGAGGGAGTTCATGGTGCGT
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