prot_H-elongata_contig14088.2830.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14088.2830.1
Unique Nameprot_H-elongata_contig14088.2830.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length212
Homology
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A6H5L308_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L308_9PHAE)

HSP 1 Score: 318 bits (814), Expect = 1.810e-99
Identity = 156/173 (90.17%), Postives = 159/173 (91.91%), Query Frame = 0
Query:    2 ACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQ 174
            AC GIVLVVDAVEGVMMHTETLVKHAL EGLAITLCINK       VDRLLLELKLPPADAYFKLVHTLEEVN LI ANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAK+YCD+YG MS KELGKRLWGDAWVDPTTR FRKG+PPPDCQRTFVQFILEPMYKIYSQ
Sbjct:  242 ACDGIVLVVDAVEGVMMHTETLVKHALHEGLAITLCINK-------VDRLLLELKLPPADAYFKLVHTLEEVNALIAANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKVYCDVYGEMSPKELGKRLWGDAWVDPTTRAFRKGYPPPDCQRTFVQFILEPMYKIYSQ 407          
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A7S2WSH7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSH7_9STRA)

HSP 1 Score: 249 bits (635), Expect = 1.290e-73
Identity = 133/211 (63.03%), Postives = 154/211 (72.99%), Query Frame = 0
Query:    1 RACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLY--GGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQARPPSPGMFLD 209
            RA  G+VL+VDAVEGVMM TE ++K ALLE L + L INK       VDRL++ELKLPPADAY+KLVHT+EEVN LI  + T VTG P RL PA GNVCFASAQHGW F+  SFAKIY + +   G+S+KEL  RLWGDAW+DP TRTF+K  P  D  RTFVQ+ILEPMYKIYSQ LGEE +TLR TL ELGV + +       P M LD
Sbjct:  197 RAADGVVLMVDAVEGVMMVTEKVIKAALLERLPLCLVINK-------VDRLIIELKLPPADAYYKLVHTIEEVNSLIAQHWTGVTGRPPRLSPALGNVCFASAQHGWCFSLLSFAKIYTNWHTDAGVSAKELSVRLWGDAWLDPETRTFKKRSPGMDVPRTFVQYILEPMYKIYSQALGEEPETLRVTLRELGVTLSK-------PEMHLD 393          
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A835Z8L8_9STRA (GTPase of the U5 snRNP particle n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L8_9STRA)

HSP 1 Score: 240 bits (613), Expect = 2.060e-70
Identity = 124/200 (62.00%), Postives = 146/200 (73.00%), Query Frame = 0
Query:    2 ACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGG--MSSKELGKRLWGDAWVDPTTRTFRKGFPPP-----DCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRI 194
            AC G+VLVVDAVEGVMM TE L + AL  GL++ L INK       VDRL+LELKLPP DAYFKL HTLEEVN L+      V G P RLDPA+GNVCFASA HGW F+  SFA  YC+ + G  + +++L KRLWGD W+DP TR FRK  PPP     + +R+FVQFILEP+YKIYSQVLGEE D L+ TL+ELGVR+
Sbjct:  211 ACDGVVLVVDAVEGVMMQTERLARIALAGGLSVCLVINK-------VDRLILELKLPPRDAYFKLQHTLEEVNALLARCWAGVAGAPPRLDPARGNVCFASALHGWCFSVGSFAAAYCNYHAGSGVDARDLTKRLWGDVWMDPWTRQFRKAQPPPGPAGEEAERSFVQFILEPLYKIYSQVLGEEPDELQATLSELGVRL 403          
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A7S2V7Q4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7Q4_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.200e-65
Identity = 113/217 (52.07%), Postives = 143/217 (65.90%), Query Frame = 0
Query:    1 RACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYG-------------------GMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQ 198
            RA  G+V+VVD  EGVM+ TE  + HA+ +GL I L +NK       VDRL+LELKLPPADAYFKL+HTLEEVNGL+   ++    PP RL P  GNVCFAS  HGW F+  SFA +YC  YG                   G+ S+EL +RLWGD ++DP TRTF+K       QRTF+QF+LEP+YKIYSQVLGE+A  L +TL E+GV + +++
Sbjct:  232 RAADGVVVVVDCAEGVMLGTERAISHAVSQGLPILLVLNK-------VDRLILELKLPPADAYFKLLHTLEEVNGLVQGQASAAGVPPPRLSPELGNVCFASGHHGWVFSLTSFADLYCRYYGRRGAYNAMRNASGSVDIADGVDSRELARRLWGDVYLDPITRTFKKQPTVEGVQRTFIQFVLEPLYKIYSQVLGEDAAALSRTLHEVGVHLRKEE 441          
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A067CTK3_SAPPC (Tr-type G domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CTK3_SAPPC)

HSP 1 Score: 216 bits (550), Expect = 1.650e-61
Identity = 109/193 (56.48%), Postives = 143/193 (74.09%), Query Frame = 0
Query:    5 GIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRD 197
            G VLVVDA+EGVMM+TE +VK ALL  L I L +NK       VDRL++ELKLPPADAYFKL+HT+EEVN +I  + T +  P +R+ P  GNVCFASAQHGW F+  SF+++Y +++ G++  EL KRLWGD +  P TRTF+K  P  +  R+FV FILEP+YKIY+QVLGE+  TL +TL +LG+R+ R+
Sbjct:  248 GAVLVVDAIEGVMMNTERIVKAALLSKLPILLVVNK-------VDRLIIELKLPPADAYFKLLHTIEEVNKIIETH-TPLGQPAKRVSPELGNVCFASAQHGWHFSLESFSRLYSEIHRGVNPTELAKRLWGDMYYAPATRTFKKKVPYENAPRSFVSFILEPIYKIYAQVLGEDTATLSKTLRDLGLRVRRE 432          
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A1V4J3G1_PATFA (Tr-type G domain-containing protein n=1 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4J3G1_PATFA)

HSP 1 Score: 202 bits (514), Expect = 8.920e-61
Identity = 103/200 (51.50%), Postives = 138/200 (69.00%), Query Frame = 0
Query:    1 RACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQAR 200
            R   G+VL +DA EGVM++TE L+KHA+ E LA+T+CINK       +DRL+LELKLPP DAY+KL H ++EVNGLI   ST+       L P  GNVCF+S+Q+   FT  SFAKIY D YG ++ +E  KRLWGD + +P TR F K  P    QR+FV+FILEP+YKI +QV+G+   TL +TL ELG+ + +++ +
Sbjct:  111 RISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINK-------IDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDEN---LVLSPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELK 300          
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: W7TM02_9STRA (116 kDa U5 small nuclear ribonucleoprotein component n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM02_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.830e-60
Identity = 116/216 (53.70%), Postives = 144/216 (66.67%), Query Frame = 0
Query:    1 RACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTE-VTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLY---GGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQAR-PPSPGMFLDCS 211
            RAC G +LVVDAVEGVMM TE L+K AL E LA+ L INK       VDRL+LELKLPPADAY+KL HT+EEVN  I  ++   +   PQRL PA GNV FASA HGW F+  SFA +Y   +       + E  KRLWG+A++D  +RTFRK  P P+  R+FVQFIL+P+YKIYS  LGE+A  L + + ELGVR+ R++    P P + L  S
Sbjct:  231 RACDGALLVVDAVEGVMMQTERLIKQALREQLALVLVINK-------VDRLILELKLPPADAYYKLKHTIEEVNACIERHTPNALVRRPQRLSPALGNVAFASAVHGWCFSLGSFASLYASYHKLGDQFETTEFAKRLWGNAYLDEASRTFRKQPPHPEADRSFVQFILDPLYKIYSHTLGEDAAELTEVIRELGVRVRREELHLDPKPLLKLVLS 439          
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A5D6YFB3_9STRA (Tr-type G domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFB3_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.240e-59
Identity = 105/194 (54.12%), Postives = 141/194 (72.68%), Query Frame = 0
Query:    5 GIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQ 198
            G VLVVDA+EGVMM+TE L+K AL   +A+ L +NK       VDRL++ELKLPP DAYFKL+HT+EEVN +I A+ T V    QRL P +GNVCFAS QHGW+FT  SFA++Y + + G+S+ +L  RLWGD +  P TRTF+K  P  +  R+FV FILEP+YKIY++VL E+A  L Q+L  +G+R+ +++
Sbjct:  244 GAVLVVDAIEGVMMNTERLIKAALKARVALVLVVNK-------VDRLIVELKLPPVDAYFKLLHTIEEVNAVIAAH-TPVGHTQQRLSPERGNVCFASGQHGWSFTLESFAQLYAETHPGVSAADLAPRLWGDKYYSPQTRTFKKTIPYENAPRSFVLFILEPLYKIYAKVLSEDAPQLAQSLRAMGLRLRKEE 429          
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A1X7VQM3_AMPQE (116 kDa U5 small nuclear ribonucleoprotein component n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VQM3_AMPQE)

HSP 1 Score: 210 bits (534), Expect = 2.440e-59
Identity = 106/201 (52.74%), Postives = 140/201 (69.65%), Query Frame = 0
Query:    1 RACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGG-MSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQAR 200
            R C G+++VVD  EGVMM+TE L+KHAL E LAIT+C+NK       +DRL+LELKLPP DAY+KL HTL+E+N L+   S    G    + P  GNVCF+S+Q+G++FT  SFA++Y DLYGG  S KE  KRLWGD + + T RTF K  P  D QRTF++FILEP+YKI++Q +G+   TL   L ELGV + + + +
Sbjct:  230 RLCDGVMIVVDVSEGVMMNTERLIKHALQEKLAITICMNK-------IDRLILELKLPPQDAYYKLKHTLDEINSLLSLYSESTEGVV--VSPLLGNVCFSSSQYGFSFTLESFAQLYSDLYGGGFSPKEFAKRLWGDIYFNKTKRTFTKKIPSTDSQRTFIEFILEPLYKIFAQTVGDVDTTLPSVLKELGVFLSKSELK 421          
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A2P4XYL9_9STRA (U5 small nuclear ribonucleoprotein component n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XYL9_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.630e-59
Identity = 105/194 (54.12%), Postives = 134/194 (69.07%), Query Frame = 0
Query:    5 GIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQ 198
            G VLVVDAVEGVMM+TE LVK AL   +AI L +NK       VDRL++ELKLPPADAYFKL+HT+EE+N +I AN T      QRL P  GNVCFAS QHGW+FT  SFA+IY + Y G+    L  R WGD + +P TRTF K  P P   R+F+QF+LEP+YK+YS+VL  +   L  +L  +G+R+ +++
Sbjct:  201 GAVLVVDAVEGVMMNTERLVKAALRANVAIVLVVNK-------VDRLIIELKLPPADAYFKLLHTIEEINAIIEAN-TPANQEKQRLSPELGNVCFASGQHGWSFTLESFAQIYAETYPGVPPSALAARFWGDKYFNPQTRTFTKKSPYPGALRSFIQFVLEPLYKMYSKVLNGDPKELSVSLRAMGLRLKKEE 386          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L308_9PHAE1.810e-9990.17Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2WSH7_9STRA1.290e-7363.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z8L8_9STRA2.060e-7062.00GTPase of the U5 snRNP particle n=1 Tax=Tribonema ... [more]
A0A7S2V7Q4_9STRA1.200e-6552.07Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A067CTK3_SAPPC1.650e-6156.48Tr-type G domain-containing protein n=3 Tax=Saprol... [more]
A0A1V4J3G1_PATFA8.920e-6151.50Tr-type G domain-containing protein n=1 Tax=Patagi... [more]
W7TM02_9STRA2.830e-6053.70116 kDa U5 small nuclear ribonucleoprotein compone... [more]
A0A5D6YFB3_9STRA2.240e-5954.12Tr-type G domain-containing protein (Fragment) n=1... [more]
A0A1X7VQM3_AMPQE2.440e-5952.74116 kDa U5 small nuclear ribonucleoprotein compone... [more]
A0A2P4XYL9_9STRA2.630e-5954.12U5 small nuclear ribonucleoprotein component n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000795Transcription factor, GTP-binding domainPFAMPF00009GTP_EFTUcoord: 1..111
e-value: 9.7E-12
score: 44.8
NoneNo IPR availableGENE3D3.90.1430.10coord: 111..198
e-value: 1.9E-62
score: 213.4
NoneNo IPR availableGENE3D3.40.50.300coord: 1..110
e-value: 1.9E-62
score: 213.4
NoneNo IPR availablePANTHERPTHR42908:SF6116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENTcoord: 2..198
NoneNo IPR availablePANTHERPTHR42908FAMILY NOT NAMEDcoord: 2..198
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..197

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14088contigH-elongata_contig14088:53..2762 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14088.2830.1mRNA_H-elongata_contig14088.2830.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14088 53..2762 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14088.2830.1 ID=prot_H-elongata_contig14088.2830.1|Name=mRNA_H-elongata_contig14088.2830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
RACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDR
LLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCF
ASAQHGWAFTTASFAKIYCDLYGGMSSKELGKRLWGDAWVDPTTRTFRKG
FPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQAR
PPSPGMFLDCS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000795TF_GTP-bd_dom
IPR027417P-loop_NTPase