mRNA_H-elongata_contig140832.2827.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140832.2827.1
Unique NamemRNA_H-elongata_contig140832.2827.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: D7G8P0_ECTSI (Superoxide dismutase [Fe] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P0_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.930e-22
Identity = 44/55 (80.00%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
            LAKAID +FGSMD MK QFG  AAGVFGSGWAWLGCTPDGKLAIT TPNQ  P  
Sbjct:  183 LAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLM 237
[Close]
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A835ZFH9_9STRA (Superoxide dismutase [Fe] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.230e-20
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
            L  AIDASFGS DAMKE+FGAAAAGVFGSGWAWLG T DGKL IT+TPNQ  P  
Sbjct:  158 LTMAIDASFGSFDAMKEKFGAAAAGVFGSGWAWLGVTKDGKLDITTTPNQDNPLM 212
[Close]
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: L1K0Q9_GUITC (Superoxide dismutase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K0Q9_GUITC)

HSP 1 Score: 88.2 bits (217), Expect = 8.690e-20
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
            L KAIDASFGSMD MKE+F AAAA  FGSGWAWLG TP+GKLAITSTPNQ  P  
Sbjct:  162 LQKAIDASFGSMDKMKEEFNAAAAKRFGSGWAWLGVTPEGKLAITSTPNQDNPLM 216
[Close]
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: Q3L2Z3_HAELA (Superoxide dismutase n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=Q3L2Z3_HAELA)

HSP 1 Score: 80.9 bits (198), Expect = 1.980e-17
Identity = 39/54 (72.22%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPF 162
            L  A+DASFGSMD MKE+F AAAAG FGSGWAWLG   DG L ITSTPNQ  P 
Sbjct:  104 LKAAVDASFGSMDVMKEKFNAAAAGRFGSGWAWLGVKADGSLGITSTPNQDNPL 157
[Close]
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A1V5KYE5_9BACT (Superoxide dismutase n=1 Tax=Verrucomicrobia bacterium ADurb.Bin474 TaxID=1852931 RepID=A0A1V5KYE5_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 1.260e-16
Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
            LAKAID +FGS DA KE F  A A  FGSGWAWL  TPDGKLA+TSTPNQ  P  
Sbjct:   98 LAKAIDQTFGSFDAFKEAFANAGANRFGSGWAWLVVTPDGKLAVTSTPNQDNPLM 152
[Close]
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A087SEE8_AUXPR (Superoxide dismutase n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SEE8_AUXPR)

HSP 1 Score: 76.6 bits (187), Expect = 1.480e-16
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPF 162
            L +AI+ASFGS+DA+KE+F AAA   FGSGWAWL  TP+GKL +TSTPNQ  P 
Sbjct:   27 LKQAIEASFGSVDALKEKFNAAATTRFGSGWAWLVVTPEGKLVVTSTPNQDNPL 80
[Close]
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A7S3XQ28_HETAK (Superoxide dismutase [Fe] n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ28_HETAK)

HSP 1 Score: 79.0 bits (193), Expect = 2.540e-16
Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
            LA AID +FGSMDAMKE+F AAA G FGSGWAWLG   DGKL I  TPNQ  P  
Sbjct:  154 LATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLM 208
[Close]
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A2A4HVS3_9SPHN (Superoxide dismutase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2A4HVS3_9SPHN)

HSP 1 Score: 77.0 bits (188), Expect = 6.760e-16
Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
            LA+AIDA+FGSMD MK  F AA  G FGSGW WL   PDGKLAITSTPNQ  P  
Sbjct:  119 LARAIDAAFGSMDKMKAAFKAAGTGRFGSGWVWLIVGPDGKLAITSTPNQDNPLM 173
[Close]
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A2V0PH72_9CHLO (Superoxide dismutase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PH72_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 8.430e-16
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
            L  AI+ +FGS+D MK +F AAAAG FGSGWAWLG  PDG L ITSTPNQ  P  
Sbjct:  104 LKAAIEGAFGSLDEMKAKFNAAAAGRFGSGWAWLGVKPDGSLGITSTPNQDNPLM 158
[Close]
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A4S4NJ53_9BACT (Superoxide dismutase n=1 Tax=Lewinella litorea TaxID=2562452 RepID=A0A4S4NJ53_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 8.910e-16
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
            LA AID +FGS DA KE+F +AAAG FGSGWAWL    DGKLA+TSTPNQ  P  
Sbjct:   95 LASAIDKAFGSYDAFKEKFSSAAAGQFGSGWAWLIVKNDGKLAVTSTPNQDNPLM 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8P0_ECTSI3.930e-2280.00Superoxide dismutase [Fe] n=1 Tax=Ectocarpus silic... [more]
A0A835ZFH9_9STRA4.230e-2078.18Superoxide dismutase [Fe] n=1 Tax=Tribonema minus ... [more]
L1K0Q9_GUITC8.690e-2078.18Superoxide dismutase n=1 Tax=Guillardia theta (str... [more]
Q3L2Z3_HAELA1.980e-1772.22Superoxide dismutase n=1 Tax=Haematococcus lacustr... [more]
A0A1V5KYE5_9BACT1.260e-1669.09Superoxide dismutase n=1 Tax=Verrucomicrobia bacte... [more]
A0A087SEE8_AUXPR1.480e-1666.67Superoxide dismutase n=1 Tax=Auxenochlorella proto... [more]
A0A7S3XQ28_HETAK2.540e-1669.09Superoxide dismutase [Fe] n=2 Tax=Heterosigma akas... [more]
A0A2A4HVS3_9SPHN6.760e-1669.09Superoxide dismutase n=2 Tax=Proteobacteria TaxID=... [more]
A0A2V0PH72_9CHLO8.430e-1665.45Superoxide dismutase n=1 Tax=Raphidocelis subcapit... [more]
A0A4S4NJ53_9BACT8.910e-1667.27Superoxide dismutase n=1 Tax=Lewinella litorea Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140832contigH-elongata_contig140832:268..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog2880.D7G8P0
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
EggNOG free text desc.oxidoreductase activity, acting on superoxide radicals as acceptor
EggNOG OGsCOG0605@1,KOG0876@2759
EC1.15.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionmanganese superoxide dismutase
Ec32 orthologEc-22_002450.1
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.6211746-CDS-H-elongata_contig140832:267..4321622929836.6211746-CDS-H-elongata_contig140832:267..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140832 268..432 -
1691679177.3870268-CDS-H-elongata_contig140832:267..4321691679177.3870268-CDS-H-elongata_contig140832:267..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140832 268..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140832.2827.1prot_H-elongata_contig140832.2827.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140832 268..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140832.2827.1

>prot_H-elongata_contig140832.2827.1 ID=prot_H-elongata_contig140832.2827.1|Name=mRNA_H-elongata_contig140832.2827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQ
GEPFF
back to top

mRNA from alignment at H-elongata_contig140832:268..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140832.2827.1 ID=mRNA_H-elongata_contig140832.2827.1|Name=mRNA_H-elongata_contig140832.2827.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig140832:268..432- (Himanthalia elongata Himel1 dioecious)
CTTGCTAAGGCGATCGACGCGTCGTTCGGATCGATGGACGCCATGAAGGA
GCAGTTTGGGGCGGCCGCCGCGGGCGTATTCGGTTCCGGCTGGGCCTGGC
TCGGCTGCACTCCTGACGGGAAGCTGGCCATCACCAGCACCCCCAACCAG
GGTGAGCCATTTTTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig140832:268..432-

>mRNA_H-elongata_contig140832.2827.1 ID=mRNA_H-elongata_contig140832.2827.1|Name=mRNA_H-elongata_contig140832.2827.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig140832:268..432- (Himanthalia elongata Himel1 dioecious)
CTTGCTAAGGCGATCGACGCGTCGTTCGGATCGATGGACGCCATGAAGGA
GCAGTTTGGGGCGGCCGCCGCGGGCGTATTCGGTTCCGGCTGGGCCTGGC
TCGGCTGCACTCCTGACGGGAAGCTGGCCATCACCAGCACCCCCAACCAG
GGTGAGCCATTTTTTCTTGCTAAGGCGATCGACGCGTCGTTCGGATCGAT
GGACGCCATGAAGGAGCAGTTTGGGGCGGCCGCCGCGGGCGTATTCGGTT
CCGGCTGGGCCTGGCTCGGCTGCACTCCTGACGGGAAGCTGGCCATCACC
AGCACCCCCAACCAGGGTGAGCCATTTTTT
back to top