prot_H-elongata_contig140612.2817.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig140612.2817.1
Unique Name	prot_H-elongata_contig140612.2817.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	127

Homology

[Close]

BLAST of mRNA_H-elongata_contig140612.2817.1 vs. uniprot
Match: D8LNS4_ECTSI (BAX inhibitor motif-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS4_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.290e-40
Identity = 81/131 (61.83%), Postives = 100/131 (76.34%), Query Frame = 0

Query:    1 GGAKVAPPTPSRGKGGN---SRPVLGPITRRGADLAENENREQGQER-RQEFAPQFLDFQSRVGFMKKVYLTVSCQLVYTGLVCTLMRGYRDPILRLLFGNGSIPQVLFFVGTIGTILFTNATLWANVDVR 127
            GGAKVAP   S   GG+   S+P+LGPITRR A  +  E  E G+E  +QEFAPQFLDF+SRVGFMKKVYLT+S QLVYTGLVC  MRGYRD IL +LFG+G++PQ+LFFV T+ TI+ T+  +W N ++R
Sbjct:   89 GGAKVAPKRTSGTGGGSDAASKPLLGPITRRKAADSAVEKGEDGKEDGQQEFAPQFLDFESRVGFMKKVYLTLSIQLVYTGLVCAAMRGYRDAILGVLFGHGNVPQILFFVSTLVTIISTHTIMWKNPELR 219

[Close]

BLAST of mRNA_H-elongata_contig140612.2817.1 vs. uniprot
Match: D8LNS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS3_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.100e-17
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 0

Query:   41 GQERR---QEFAPQFLDFQSRVGFMKKVYLTVSCQLVYTGLVCTLMRGYRDPILRLLFGNGSIPQVLFFVGTIGTILFTNATLWANVDV 126
            G ERR   +EF P FLDF+SRVGF+KKV        VY GLVC  MRGYRD IL LL G G + Q+LF   T+ T +FT+A +    +V
Sbjct:   41 GVERRTVSKEFTPHFLDFESRVGFVKKV--------VYAGLVCATMRGYRDVILGLLLGYGIVQQILFISSTLVTTIFTHAIMRKKPEV 121

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig140612.2817.1 vs. uniprot

BLAST of mRNA_H-elongata_contig140612.2817.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LNS4_ECTSI	1.290e-40	61.83	BAX inhibitor motif-containing protein n=2 Tax=Ect...	[more]
D8LNS3_ECTSI	5.100e-17	51.69	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 104..124
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 85..103
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 65..84
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 125..127
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..64
None	No IPR available	TMHMM	TMhelix		coord: 65..87
None	No IPR available	TMHMM	TMhelix		coord: 102..124

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig140612	contig	H-elongata_contig140612:275..1368 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig140612.2817.1	mRNA_H-elongata_contig140612.2817.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig140612 275..1368 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig140612.2817.1 ID=prot_H-elongata_contig140612.2817.1|Name=mRNA_H-elongata_contig140612.2817.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
GGAKVAPPTPSRGKGGNSRPVLGPITRRGADLAENENREQGQERRQEFAP
QFLDFQSRVGFMKKVYLTVSCQLVYTGLVCTLMRGYRDPILRLLFGNGSI
PQVLFFVGTIGTILFTNATLWANVDVR