mRNA_H-elongata_contig140484.2811.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: D8LCG7_ECTSI (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG7_ECTSI) HSP 1 Score: 339 bits (870), Expect = 3.700e-112 Identity = 171/250 (68.40%), Postives = 195/250 (78.00%), Query Frame = 1
Query: 4 GQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVW--TRGDVRLETRDSALAPGQFAVFYSGGE 747
G+VRLLLSPD VKDQTYFLCAL Q QLRKALFP+G +TK+++RELAESYDLPTK RKDSQ GICFLGKLKFD+FL+H+LG +PG +VD+ G IGEH+GLWFHTIGQRKGVGPGL PG VNLGPWYV+DKDM NVL VTNDR+AIA PRE F+VEAL WI G PP L + MRL+VKTRHGPQM +C LRL P A +GG + V TRG V L+++DSALAPGQFA FY GGE
Sbjct: 164 GRVRLLLSPDAVKDQTYFLCALTQDQLRKALFPLGVYTKDQIRELAESYDLPTKHRKDSQ--GICFLGKLKFDEFLQHYLGTSPGAIVDQT-GRHIGEHKGLWFHTIGQRKGVGPGLVPGVVNLGPWYVADKDMERNVLVVTNDREAIASPREVFRVEALQWISGRPPAELARDRSMRLRVKTRHGPQMRDCLLRLVPEVAPGDSGGRAGGAEATVEDRVGSPTRGYVNLDSKDSALAPGQFAAFYLGGE 410
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A6H5J9B2_9PHAE (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B2_9PHAE) HSP 1 Score: 340 bits (873), Expect = 3.840e-108 Identity = 172/250 (68.80%), Postives = 196/250 (78.40%), Query Frame = 1
Query: 4 GQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVW--TRGDVRLETRDSALAPGQFAVFYSGGE 747
G+VRLLLSPD VKDQTYFLCAL Q QLRKALFP+G +TK+++RELAESYDLPTK RKDSQ GICFLGKLKFD+FL+H+LG +PG +VD+ G IGEH+GLWFHTIGQRKGVGPGL PG VNLGPWYV+DKDM +NVL VTNDR+AIA PRE F+VEAL WI G PP L + G MRL+VKTRHGPQM +C LRL P A H + S G + V TRG V L+ +DSALAPGQFA FY G E
Sbjct: 564 GRVRLLLSPDAVKDQTYFLCALTQDQLRKALFPLGVYTKDQIRELAESYDLPTKHRKDSQ--GICFLGKLKFDEFLQHYLGTSPGAIVDQT-GRHIGEHKGLWFHTIGQRKGVGPGLVPGVVNLGPWYVADKDMESNVLVVTNDREAIASPREVFRVEALQWISGRPPAELARDGSMRLRVKTRHGPQMRDCFLRLVPEVA-HGDGSGGAGAEATAEDGVGSPTRGYVNLDNKDSALAPGQFAAFYLGDE 809
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A835YKA8_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKA8_9STRA) HSP 1 Score: 251 bits (640), Expect = 2.710e-78 Identity = 135/247 (54.66%), Postives = 157/247 (63.56%), Query Frame = 1
Query: 4 GQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPP---GAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFY 735
G+ RLL SPD VKDQTYFLC L+Q QL +ALFPVGA TKE VR AE ++LPTK+R DSQ GICFLGKLKF+DFLR HLGEAPG V+ +G IG HRGLWFHTIGQR+GVGP L P ++ GPW+V+ KD+ +N L VTND A+ R F+VE L WI + G L VKTRHGP + C LRL P G EA + LE +DS LAPGQFA FY
Sbjct: 157 GEARLLRSPDPVKDQTYFLCGLSQAQLSRALFPVGALTKEEVRRQAERFNLPTKARPDSQ--GICFLGKLKFEDFLRAHLGEAPGPCVELETGAVIGRHRGLWFHTIGQRRGVGPVLHPTEIHRGPWFVARKDVPSNTLVVTNDYAAVNEARTQFRVEGLHWISPVAAAPVLSSGA-ELLVKTRHGPAIQRCLLRLERPEGAGEGGVEAGXXXXXXXXXXXXXTSATCTLLEGKDSGLAPGQFAAFY 400
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A7S0EE01_9CRYP (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EE01_9CRYP) HSP 1 Score: 253 bits (647), Expect = 7.880e-77 Identity = 135/248 (54.44%), Postives = 164/248 (66.13%), Query Frame = 1
Query: 4 GQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYSGGE 747
G RLL+SPD +KDQTYFLC L Q QL+ ALFP+G +TKE+VRELA +DLPT+ RKDSQ GICFLGKLKF+DF+ HHLGE PG VVD +G +GEHRGLWF+TIGQRKG+G +LGPW+V+ KD NVL V+N D I GPR F +E+++WI G P D++ +RL++KTRHGP + N L LSP GR G V LE RDS LAPGQ+A Y G E
Sbjct: 396 GVSRLLMSPDKIKDQTYFLCNLRQEQLKHALFPIGGYTKEQVRELAREFDLPTQKRKDSQ--GICFLGKLKFEDFVGHHLGENPGPVVDFHTGRELGEHRGLWFYTIGQRKGLGSATRR-VTHLGPWFVAGKDRDKNVLYVSNQYDTIDGPRRGFDIESINWISGEAP--RDEE--VRLRIKTRHGPGIHNGLLTLSP------------GR---------LSGRVSLEGRDSGLAPGQWAALYDGEE 615
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: L1IST2_GUITC (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=3 Tax=Guillardia theta TaxID=55529 RepID=L1IST2_GUITC) HSP 1 Score: 246 bits (629), Expect = 1.950e-76 Identity = 128/245 (52.24%), Postives = 161/245 (65.71%), Query Frame = 1
Query: 13 RLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYSGGE 747
RL++SPD VKDQTYFLC L Q QL+ ALFP+G +TKE+VRELA ++LPT+ RKDSQ GICFLGKLKF+DF+ HHLGE PG V+D +G +GEHRGLWF+TIGQRKG+G +LGPW+V+ KD N+L V+N D I GPR SF VE ++W+ GS L + +RL++KTRHGP + + L LS + SG V L+ RDS LAPGQ+A Y G E
Sbjct: 181 RLMMSPDKVKDQTYFLCNLRQDQLKHALFPIGGYTKEKVRELAREFNLPTQRRKDSQ--GICFLGKLKFEDFVGHHLGEDPGPVIDFHTGRELGEHRGLWFYTIGQRKGLGSATRK-VTHLGPWFVAGKDRERNMLYVSNQYDVIEGPRRSFDVEQINWMAGS----LPEDDALRLRIKTRHGPNIHDGLLTLS-------QGKLSG--------------RVSLDGRDSGLAPGQWAALYDGEE 397
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A7S2RGR0_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGR0_9STRA) HSP 1 Score: 240 bits (612), Expect = 1.220e-74 Identity = 126/248 (50.81%), Postives = 165/248 (66.53%), Query Frame = 1
Query: 1 SGQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGL---DQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFY 735
SG L SPD VKDQTYFL L Q Q+ A FPVG + K ++R+LA LPT++RKDSQ GICFLGKLK+DDFL H+LG+APG V++ + + +G+HRGL FHTIGQR+G+G L P ++ GPW+V+ KD ++N L VT + DA+ PR SFQVE ++WI GSPP GL D G + L V+ RHGP ++R S R+ S+SGG+ V+ DV ++ RDS LAPGQ+A FY
Sbjct: 104 SGLQELRRSPDRVKDQTYFLSTLTQEQISSAFFPVGDYDKAQIRDLARDLALPTQARKDSQ--GICFLGKLKWDDFLEHYLGQAPGEVIELETQKILGQHRGLHFHTIGQRRGIGRVLRPDEIHRGPWFVAAKDPVSNTLFVTTNYDAVTAPRSSFQVENVNWISGSPPVGLRTEDAPGPVSLTVQVRHGPTAYPGTVRHS------RDDSNSGGQG------VF---DVSIDGRDSGLAPGQYAAFY 334
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A0G4FIA7_VITBC (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FIA7_VITBC) HSP 1 Score: 244 bits (623), Expect = 9.800e-74 Identity = 124/249 (49.80%), Postives = 154/249 (61.85%), Query Frame = 1
Query: 1 SGQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYSGGE 747
+G VRL SPD +KDQTYFLC L+Q QL A FP+G F K RVR+LA Y LPT SR+DSQ GICFLGKL+++DFL H+LG+ PG +VD GE +GEH GLW HT+GQRKG+GP L V+ GP++V KD N L VTND DAI PR+ QVE++ WI G PP L G ++V+ RHGP+ +RL + E V LE +DS +APGQF FY+G E
Sbjct: 341 NGPVRLFRSPDRIKDQTYFLCGLSQEQLAMADFPIGTFDKARVRQLARDYSLPTASRRDSQ--GICFLGKLRWEDFLTHYLGKNPGPIVDVAGGELLGEHHGLWLHTVGQRKGLGPYLRDKMVHRGPFFVVGKDPDTNTLLVTNDYDAIDRPRQELQVESIGWIAGKPPASLSTAGDAIMEVQLRHGPKTHMARVRLLDGDGESAE--------------------VHLEEKDSGIAPGQFVAFYAGDE 567
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A7S4DG19_HETAK (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG19_HETAK) HSP 1 Score: 234 bits (596), Expect = 1.800e-72 Identity = 129/244 (52.87%), Postives = 156/244 (63.93%), Query Frame = 1
Query: 13 RLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGP-RES-FQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYS 738
RLL SPD VKDQTYFL L Q Q+ KALFPVG +TK +RELAE +DLPTK RKDSQ GICFLGKLKFDDFL H+LGE PG V+D S E +GEH+GLW+HTIGQRKG+GP L G VN GPWYV +K+M N L V+N + I+ RE+ V+ WI G+ P L M+L+VK RHGP + ++ G N A++ V LE DS +APGQFA FY+
Sbjct: 71 RLLCSPDPVKDQTYFLSTLGQDQISKALFPVGEYTKSEIRELAEKFDLPTKMRKDSQ--GICFLGKLKFDDFLAHYLGENPGLVIDEESEEVVGEHKGLWYHTIGQRKGLGPSLFAGQVNRGPWYVIEKNMRENKLIVSNSAEKISSILRENVLVVQDFQWISGNIPEKLKTAKKMKLKVKLRHGPNTQSAWIQ------------KVNGSNT----AIF----VELENNDS-IAPGQFAAFYT 291
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A448YW36_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW36_9STRA) HSP 1 Score: 235 bits (599), Expect = 2.420e-69 Identity = 124/254 (48.82%), Postives = 165/254 (64.96%), Query Frame = 1
Query: 1 SGQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTN--DRDAIAGPRESFQVEALSWIGGSPPPGL----DQQG--VMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYS 738
+G RL +PD VKDQ+YFLCAL Q+QL + +FP+G K+ VR+LAE ++LP + R DSQ G+CFLGK+KF DF++ HLGE G++VD V+GETIGEH G+W+HT+GQRKG+GP L+P + GPWYV KD N++ +N D D A R F VE +SWIGG+ P L D++G V R +K RHGP++ +L + A+ RE GG N T G V LE +D LAPGQ+ VFY+
Sbjct: 428 AGVARLFRAPDPVKDQSYFLCALEQSQLSRLIFPIGHLEKKEVRQLAEDFELPNRHRPDSQ--GLCFLGKVKFRDFMQIHLGEKAGKIVDAVTGETIGEHHGVWYHTVGQRKGIGPYLEPKAGSKGPWYVVAKDPSQNIVFASNQYDEDVFAQARSEFHVENISWIGGTEPTHLSNHRDERGETVYRFVLKIRHGPRLAAGTLTI----AEERE----GGPNHR------TGGLVALEEKDGGLAPGQYVVFYT 665
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A7S3RT64_EMIHU (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RT64_EMIHU) HSP 1 Score: 220 bits (561), Expect = 1.090e-68 Identity = 119/246 (48.37%), Postives = 146/246 (59.35%), Query Frame = 1
Query: 4 GQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYSG 741
G+ L S D KDQTYFL L+Q+QL K LFP+GA K VR LA LP ++RKDSQ GICFLG+L +D FLR HLGE G V + +GE IGEHRGLW+HT+GQR+GVGP L P +V+ GPWYV K+M +NVL V+ + + PR +F +A++WIGG+PPP L+VK RHG S+ L GA R V L RD LAPGQFA FY G
Sbjct: 1 GRAVLYQSADAHKDQTYFLSQLSQSQLAKTLFPLGALPKSDVRRLAHQRRLPNRARKDSQ--GICFLGQLDYDAFLRGHLGERRGEVREFETGEIIGEHRGLWYHTVGQRRGVGPALGPRHVSRGPWYVVRKEMDSNVLFVSREYASADKPRNAFHADAINWIGGAPPPAGAAGEPTPLRVKVRHGAASHEASVSLLDGGA---------------------RAHVSLAGRDKGLAPGQFAAFYDG 223 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig140484.2811.1 >prot_H-elongata_contig140484.2811.1 ID=prot_H-elongata_contig140484.2811.1|Name=mRNA_H-elongata_contig140484.2811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp SGQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYback to top mRNA from alignment at H-elongata_contig140484:34..1707+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig140484.2811.1 ID=mRNA_H-elongata_contig140484.2811.1|Name=mRNA_H-elongata_contig140484.2811.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1674bp|location=Sequence derived from alignment at H-elongata_contig140484:34..1707+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig140484:34..1707+ >mRNA_H-elongata_contig140484.2811.1 ID=mRNA_H-elongata_contig140484.2811.1|Name=mRNA_H-elongata_contig140484.2811.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig140484:34..1707+ (Himanthalia elongata Himel1 dioecious)back to top |