mRNA_H-elongata_contig100231.28.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100231.28.1
Unique NamemRNA_H-elongata_contig100231.28.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: D8LI15_ECTSI (Folate/biopterin transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI15_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 2.150e-70
Identity = 112/143 (78.32%), Postives = 126/143 (88.11%), Query Frame = 1
Query:    4 AKRRLDRYMRSEDDLNIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432
             +R +DR+   +++LNIY  AS+AIVMSYFS+GVALELL TP+AYYLIDDLGAESGVYTVWV+LV LPWSFK  YGFLSDCVPIRGLKRKPYMLIGW VHI+SN+ LAIMGTP  +  VILSF+SACGYLLSDVMTDAIVVEK
Sbjct:  106 VQRWIDRHRNRDEELNIYSLASLAIVMSYFSIGVALELLYTPIAYYLIDDLGAESGVYTVWVILVTLPWSFKAAYGFLSDCVPIRGLKRKPYMLIGWGVHILSNSALAIMGTPGEDAVVILSFLSACGYLLSDVMTDAIVVEK 248          
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A835YTY0_9STRA (Folate/biopterin transporter n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY0_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.530e-38
Identity = 66/128 (51.56%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   49 NIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432
            ++Y   S+AI+MSYFSVGV L   + PV  YLI +LGA S  + V+ ++  LPWSFKV +GF+SD  PI G++R PY++IGW VHI     LA +  P+  W +  +F++ACGYLLSDVMTD+I+VE+
Sbjct:  104 DLYSLPSLAIIMSYFSVGVVLTFTTVPVTVYLIQELGASSTQFAVYTIVCKLPWSFKVFFGFISDAFPICGMRRLPYLVIGWTVHIACYVTLAFLVQPTVEWVIGAAFVAACGYLLSDVMTDSIMVER 231          
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A7S1FNC7_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FNC7_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.590e-37
Identity = 66/128 (51.56%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   49 NIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432
            NI    ++AI MSYF +GVAL+LL TP+  Y I+DLGA +    V   ++A+PW FKV+YGFLSDCVPI GL+RKPY + GWV++++ N IL +   PS    + L F+   GY+L+DVMTDA++VE+
Sbjct:  292 NISSLPNLAIPMSYFCIGVALQLLRTPLIVYFIEDLGATAAEVNVLFTVMAVPWCFKVLYGFLSDCVPISGLRRKPYFMTGWVLYVVCNLILCVAQQPSIQMCIFLVFLQTAGYMLADVMTDALIVER 419          
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A1Z5K9Z9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9Z9_FISSO)

HSP 1 Score: 138 bits (348), Expect = 2.690e-35
Identity = 66/122 (54.10%), Postives = 87/122 (71.31%), Query Frame = 1
Query:   67 SIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432
            ++AI MSYF +GVAL+LL TP+  Y I+DL A      V   ++A+PW FKV+YGFLSDC+PI GL+RKPY + GWVV I+SN IL I   PS    ++L F    GY+L+DVMTDA++VE+
Sbjct:  214 NLAIPMSYFCIGVALQLLRTPLIVYFIEDLNATPAEVNVLFTVMAVPWCFKVIYGFLSDCLPISGLRRKPYFMTGWVVFIVSNLILMINPIPSIPVCILLVFTQTAGYMLADVMTDALIVER 335          
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: D7G1P4_ECTSI (Biopterin transport-related protein BT1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P4_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 3.390e-33
Identity = 61/138 (44.20%), Postives = 95/138 (68.84%), Query Frame = 1
Query:   19 DRYMRSEDDLNIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432
            D++MR     NI+   + A+VMSYF VG A+  L+TP++YY+++ +GA  G   + + L  LPWSFK++YGF+SD  PI G++RKPY ++GW+V++++N  +A    PS     + S I + G++LSDV TDAI+VE+
Sbjct:   64 DKWMR-----NIWAVQNRAVVMSYFCVGFAIRFLTTPISYYMVNVIGASPGQQNIMLTLAQLPWSFKLVYGFISDNFPIGGMRRKPYFIMGWLVYVLTNLYVATKEVPSIQLLAVGSLIMSMGFMLSDVTTDAILVER 196          
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A6V1WMI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WMI5_HETAK)

HSP 1 Score: 130 bits (328), Expect = 5.630e-33
Identity = 61/123 (49.59%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   64 ASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432
            A++AI +SYF VG AL  LSTP+ YY++  L A     +V   + +LPWSFK+ YGFLSDCVPIRG++RKPY ++GW ++++ +  LA +  PS      L F+   GY+++DVMTDAIVVE+
Sbjct:   64 ANVAIPLSYFCVGFALNFLSTPLTYYMVHVLDASPAQQSVVRTMQSLPWSFKLAYGFLSDCVPIRGMRRKPYFILGWTIYLLCHLTLAALIQPSIGPLTSLLFLGTVGYMMADVMTDAIVVER 186          
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A835Z8G1_9STRA (Biopterin transport-related protein BT1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G1_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.670e-32
Identity = 58/128 (45.31%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   49 NIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432
            +I+   + A+  SYF VG+A+  L TPV+YYL+ +LGA      V V L  LPWSFK++YGF+SD  PI G++RKPY + GW ++ + N +LA  G P      +L  +  CG+++SDV TDAI+VE+
Sbjct:    3 DIWAAPNRAVPASYFCVGIAMSFLRTPVSYYLVHELGASPSQQNVVVTLAMLPWSFKLVYGFISDNFPIGGMRRKPYFIAGWFIYSMCNLLLAATGRPGVQSVALLQLLGTCGFMMSDVTTDAIIVER 130          
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A7S2H0Y7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0Y7_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.550e-32
Identity = 58/133 (43.61%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   31 RSEDDLNIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVE 429
            + +D  N+Y   ++AI MSY++VG+AL  LSTPV+YYL+D+L A+S +   +  +  LPW  K+ +G LSD  P+ G  R+P+  +GW + ++SN  L IMGTP  +  ++LSF    G LLSD + DA++VE
Sbjct:   16 KGQDVTNLYWTGNMAIAMSYWNVGIALSFLSTPVSYYLVDNLEADSAMVNTYSAITYLPWCLKIFFGILSDVYPMFGWHRRPWFFLGWGIFMVSNLALTIMGTPGTSALLLLSFSQTMGLLLSDTVADAMIVE 148          
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: W7TKM6_9STRA (Folate biopterin transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKM6_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.320e-30
Identity = 57/129 (44.19%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   46 LNIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432
            +++Y   + A++MSY+++G A+    TP+  Y ++ L        +   ++ALPWSFKV+YG LSDCVPI G +RKPY +IGW   +  N  LA +G PS N  + + F S CGY+L+DVM DAI+VE+
Sbjct:  129 ISMYSLQNSALLMSYWTIGFAMTFTGTPLTAYAVNKLNVGPAQLNIAGTMLALPWSFKVLYGLLSDCVPIMGKRRKPYFVIGWSAFVAMNLGLASLGEPSLNALIGMGFFSVCGYMLADVMCDAIIVER 257          
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A7R9U5H3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5H3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.200e-28
Identity = 51/134 (38.06%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   31 RSEDDLNIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432
            ++E  L+++    +A+ M+YF +GV++  ++TP+  Y++++LGAE        +L++LPWSFK+++GF+SD  PI G +RKPYM++G + H ++   LA+MGTP       L++++  G ++ DVM D +VVE+
Sbjct:  129 KNEAQLDLWSIEGLALPMAYFVIGVSVSFITTPLQVYMVEELGAEPEAQNTISILMSLPWSFKLLFGFVSDVNPILGWRRKPYMILGSMAHAVAYLSLALMGTPGIQVLSFLTWVATMGQIMVDVMADTLVVER 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI15_ECTSI2.150e-7078.32Folate/biopterin transporter n=2 Tax=Ectocarpus Ta... [more]
A0A835YTY0_9STRA2.530e-3851.56Folate/biopterin transporter n=2 Tax=Tribonema min... [more]
A0A7S1FNC7_9STRA1.590e-3751.56Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A1Z5K9Z9_FISSO2.690e-3554.10Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
D7G1P4_ECTSI3.390e-3344.20Biopterin transport-related protein BT1 n=2 Tax=Ec... [more]
A0A6V1WMI5_HETAK5.630e-3349.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z8G1_9STRA1.670e-3245.31Biopterin transport-related protein BT1 n=1 Tax=Tr... [more]
A0A7S2H0Y7_9STRA8.550e-3243.61Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TKM6_9STRA1.320e-3044.19Folate biopterin transporter n=2 Tax=Monodopsidace... [more]
A0A7R9U5H3_9STRA5.200e-2838.06Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100231contigH-elongata_contig100231:587..1756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.4
Seed ortholog evalue6.4e-56
Seed eggNOG ortholog2880.D8LI15
EggNOG free text desc.BT1 family
EggNOG OGs29S8M@1,2RXD7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size435
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100231.28.1prot_H-elongata_contig100231.28.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100231 587..1729 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929544.82911-CDS-H-elongata_contig100231:586..8021622929544.82911-CDS-H-elongata_contig100231:586..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100231 587..802 -
1691679062.7606618-CDS-H-elongata_contig100231:586..8021691679062.7606618-CDS-H-elongata_contig100231:586..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100231 587..802 -
1622929544.8595617-CDS-H-elongata_contig100231:1537..17291622929544.8595617-CDS-H-elongata_contig100231:1537..1729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100231 1538..1729 -
1691679062.7733114-CDS-H-elongata_contig100231:1537..17291691679062.7733114-CDS-H-elongata_contig100231:1537..1729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100231 1538..1729 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929544.87943-UTR-H-elongata_contig100231:1729..17561622929544.87943-UTR-H-elongata_contig100231:1729..1756Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100231 1730..1756 -
1691679062.7837071-UTR-H-elongata_contig100231:1729..17561691679062.7837071-UTR-H-elongata_contig100231:1729..1756Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100231 1730..1756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100231.28.1

>prot_H-elongata_contig100231.28.1 ID=prot_H-elongata_contig100231.28.1|Name=mRNA_H-elongata_contig100231.28.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MRSEDDLNIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVY
TVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILA
IMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK*
back to top

mRNA from alignment at H-elongata_contig100231:587..1756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100231.28.1 ID=mRNA_H-elongata_contig100231.28.1|Name=mRNA_H-elongata_contig100231.28.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1170bp|location=Sequence derived from alignment at H-elongata_contig100231:587..1756- (Himanthalia elongata Himel1 dioecious)
TGGGCCAAGCGGCGTTTGGACCGTTACATGAGATCAGAAGACGATCTCAA CATCTATGGCTGGGCGTCCATCGCGATCGTGATGTCATACTTTTCTGTGG GCGTCGCGCTGGAGCTCCTGTCGACGCCCGTCGCGTATTACCTCATCGAC GACCTTGGCGCAGAGAGCGGGGTGTACACCGTTTGGGTGGTGCTCGTGGC CCTACCGTGGAGCTTTAAGGTACACGAGCATACGTACGAGCGAAATATTG AATCGATTGGGTTTTTTTTTAATTCAAGGCGGGGAGTGATAACTGTGACT ACGTGGTCACAATTTAGTTTGTGACTACAGGAAAAAAATGTAAAAAACGT TAAACGGCGTTAATTTTATGCAGAGTAAAATAGCCGTTTGTTAAAAACCT ATATATACTGGCTGACCCAACCCGCCCCCGCCCTCTAACCCTAACCCACA CACACCCACCACCCTTGGGCTCTGAACCTTAATTTGATGGTGGAAACCCC GGGAATGATCCCTTATATGTCCCCGTAGTCACAAACTAAATTGTGACTAT GTAGTCACAATAATCATTTCTTGATTTTGAATTCATAATAATGATGTGTA GACGGGTTTTGATTGGCGTTTGCGTCGAACATTTTCGGCGGCAAGCACAG TCCCGGGGCGAACGAACGAGCCCCCCCCCCCCGTCCCAACCCTAAAGCAA GCGTGATGCCGAAGTAACCTACATGCGACCGTAACGGCAGATTGATTCCC TACAGACTGTATGGAACAAACAGGTCTTTGCTAGAAATATCGCGATAGCT TCTGCCGGCCGTTCTTCTCGTGCTGGAGAAACAGTTCTTAACTATATTGG CCTTGTGATCATTGGGAGACAACCGGGGTCGTTATCTCTAACAAAACCCT CTTCTGACCGGACGATGGTGAAAACATCGGGGGGTGGTTTGTGGATCCCG TAAGGTCATGTACGGGTTTCTCTCGGACTGCGTGCCTATCCGGGGTCTCA AGCGGAAGCCGTACATGCTGATCGGCTGGGTGGTGCACATTATCAGCAAC GCCATCCTCGCTATTATGGGAACACCGAGCGCGAATTGGACGGTCATCCT ATCGTTCATCTCCGCGTGCGGCTACCTCCTGAGCGACGTCATGACGGACG CAATTGTGGTGGAGAAGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig100231:587..1756-

>mRNA_H-elongata_contig100231.28.1 ID=mRNA_H-elongata_contig100231.28.1|Name=mRNA_H-elongata_contig100231.28.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig100231:587..1756- (Himanthalia elongata Himel1 dioecious)
ATGAGATCAGAAGACGATCTCAACATCTATGGCTGGGCGTCCATCGCGAT
CGTGATGTCATACTTTTCTGTGGGCGTCGCGCTGGAGCTCCTGTCGACGC
CCGTCGCGTATTACCTCATCGACGACCTTGGCGCAGAGAGCGGGGTGTAC
ACCGTTTGGGTGGTGCTCGTGGCCCTACCGTGGAGCTTTAAGATGAGATC
AGAAGACGATCTCAACATCTATGGCTGGGCGTCCATCGCGATCGTGATGT
CATACTTTTCTGTGGGCGTCGCGCTGGAGCTCCTGTCGACGCCCGTCGCG
TATTACCTCATCGACGACCTTGGCGCAGAGAGCGGGGTGTACACCGTTTG
GGTGGTGCTCGTGGCCCTACCGTGGAGCTTTAAGGTCATGTACGGGTTTC
TCTCGGACTGCGTGCCTATCCGGGGTCTCAAGCGGAAGCCGTACATGCTG
ATCGGCTGGGTGGTGCACATTATCAGCAACGCCATCCTCGCTATTATGGG
AACACCGAGCGCGAATTGGACGGTCATCCTATCGTTCATCTCCGCGTGCG
GCTACCTCCTGAGCGACGTCATGACGGACGCAATTGTGGTGGAGAAGTGA
GTCATGTACGGGTTTCTCTCGGACTGCGTGCCTATCCGGGGTCTCAAGCG
GAAGCCGTACATGCTGATCGGCTGGGTGGTGCACATTATCAGCAACGCCA
TCCTCGCTATTATGGGAACACCGAGCGCGAATTGGACGGTCATCCTATCG
TTCATCTCCGCGTGCGGCTACCTCCTGAGCGACGTCATGACGGACGCAAT
TGTGGTGGAGAAGTGA
back to top