mRNA_H-elongata_contig1401.2793.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1401.2793.1
Unique NamemRNA_H-elongata_contig1401.2793.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1401.2793.1 vs. uniprot
Match: D7G5R2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R2_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 1.270e-76
Identity = 151/284 (53.17%), Postives = 185/284 (65.14%), Query Frame = 1 
Query:    4 SNGGVLHVRRGAVATFSVPVYFENSSVAMGYSGGAMHVEGTVTFEHAAHFEGNQAGGGGG------SCGGAVSIGSNGRVVFSEFTTFEDNSSERGGALCNLGSTIFYRRSFFTGNSAIASGDGSEGVAVEGDGGAVYTAHDSEMVFRRKSTMLANSADGSGGALYNSGTSSFDTSAAFQGNCAKGISR----HSDDLQTF------EDEVGGGHIFNRGNLIVRGDASFREGATSANGGAVYTLSGERTVLGGITTLVDNSADGQCSHLFSHLGGGEVRLMTT 807
            SNGG L V  G  A F VPV+FE +SV  GYSGGA H +G VTFE+AAHF GN+A G G       SCGG VS+G  GRV FSE  +FE+NS+  GGALCN G   F+RRSFF GN A     G     V  DGGAV+T   S  +F R+STML N A GSGG++YN+G S+F+TSAAF+GN A   +R     S +++        E E GGGH+FNRG L + GDASF +G ++ +GGAVYT+SGE T+L GIT+   NSA G C  +F+ L G EVRL TT
Sbjct:  110 SNGGALEVEEGGAAVFLVPVHFEGNSVQNGYSGGAFHADGEVTFENAAHFVGNRALGQGSRGQEAHSCGGGVSVGGTGRVEFSELASFEENSAWTGGALCNRGWAKFFRRSFFNGNRA----SGGASTRVGADGGAVFTEEGSTTIFTRRSTMLRNWAAGSGGSVYNAGVSTFETSAAFRGNTAAAAARVEAGSSQNVEAALPPSPPETETGGGHLFNRGYLEIMGDASFIDGVSATDGGAVYTVSGEDTILSGITSFHGNSARGNCKDVFAALAGSEVRLTTT 389
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BLAST of mRNA_H-elongata_contig1401.2793.1 vs. uniprot
Match: A0A6H5JTS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.650e-29
Identity = 71/118 (60.17%), Postives = 81/118 (68.64%), Query Frame = 1 
Query:    4 SNGGVLHVRRGAVATFSVPVYFENSSVAMGYSGGAMHVEGTVTFEHAAHFEGNQAGGGGG------SCGGAVSIGSNGRVVFSEFTTFEDNSSERGGALCNLGSTIFYRRSFFTGNSA 339
            SNGG L V  G  A F VPV+FE +SV  GYSGGA H +G VTFE+AAHF GN+A G G       SCGG VS+G  GRV FSE  +FE+NS+ RGGALCN G   F+RRSFF GN A
Sbjct:  161 SNGGALEVEEGGAAVFLVPVHFEGNSVQNGYSGGAFHTDGEVTFENAAHFVGNRALGQGSRGQEAHSCGGGVSVGGTGRVEFSELASFEENSAWRGGALCNRGWAKFFRRSFFNGNQA 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1401.2793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5R2_ECTSI1.270e-7653.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTS8_9PHAE1.650e-2960.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1401contigH-elongata_contig1401:6708..10705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1388
Cds size858
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1401.2793.1prot_H-elongata_contig1401.2793.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1401 7151..10618 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929833.2730994-UTR-H-elongata_contig1401:6707..71501622929833.2730994-UTR-H-elongata_contig1401:6707..7150Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1401 6708..7150 -
1691679176.1848881-UTR-H-elongata_contig1401:6707..71501691679176.1848881-UTR-H-elongata_contig1401:6707..7150Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1401 6708..7150 -
1622929833.3786159-UTR-H-elongata_contig1401:10618..107051622929833.3786159-UTR-H-elongata_contig1401:10618..10705Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1401 10619..10705 -
1691679176.2396948-UTR-H-elongata_contig1401:10618..107051691679176.2396948-UTR-H-elongata_contig1401:10618..10705Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1401 10619..10705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929833.2897513-CDS-H-elongata_contig1401:7150..73511622929833.2897513-CDS-H-elongata_contig1401:7150..7351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1401 7151..7351 -
1691679176.1926064-CDS-H-elongata_contig1401:7150..73511691679176.1926064-CDS-H-elongata_contig1401:7150..7351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1401 7151..7351 -
1622929833.3051558-CDS-H-elongata_contig1401:7962..80371622929833.3051558-CDS-H-elongata_contig1401:7962..8037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1401 7963..8037 -
1691679176.200023-CDS-H-elongata_contig1401:7962..80371691679176.200023-CDS-H-elongata_contig1401:7962..8037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1401 7963..8037 -
1622929833.320075-CDS-H-elongata_contig1401:8230..83591622929833.320075-CDS-H-elongata_contig1401:8230..8359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1401 8231..8359 -
1691679176.2072434-CDS-H-elongata_contig1401:8230..83591691679176.2072434-CDS-H-elongata_contig1401:8230..8359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1401 8231..8359 -
1622929833.333188-CDS-H-elongata_contig1401:8801..89891622929833.333188-CDS-H-elongata_contig1401:8801..8989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1401 8802..8989 -
1691679176.216563-CDS-H-elongata_contig1401:8801..89891691679176.216563-CDS-H-elongata_contig1401:8801..8989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1401 8802..8989 -
1622929833.346947-CDS-H-elongata_contig1401:9928..101541622929833.346947-CDS-H-elongata_contig1401:9928..10154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1401 9929..10154 -
1691679176.2243862-CDS-H-elongata_contig1401:9928..101541691679176.2243862-CDS-H-elongata_contig1401:9928..10154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1401 9929..10154 -
1622929833.3604555-CDS-H-elongata_contig1401:10579..106181622929833.3604555-CDS-H-elongata_contig1401:10579..10618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1401 10580..10618 -
1691679176.232012-CDS-H-elongata_contig1401:10579..106181691679176.232012-CDS-H-elongata_contig1401:10579..10618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1401 10580..10618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1401.2793.1

>prot_H-elongata_contig1401.2793.1 ID=prot_H-elongata_contig1401.2793.1|Name=mRNA_H-elongata_contig1401.2793.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp
MGYSGGAMHVEGTVTFEHAAHFEGNQAGGGGGSCGGAVSIGSNGRVVFSE
FTTFEDNSSERGGALCNLGSTIFYRRSFFTGNSAIASGDGSEGVAVEGDG
GAVYTAHDSEMVFRRKSTMLANSADGSGGALYNSGTSSFDTSAAFQGNCA
KGISRHSDDLQTFEDEVGGGHIFNRGNLIVRGDASFREGATSANGGAVYT
LSGERTVLGGITTLVDNSADGQCSHLFSHLGGGEVRLMTTPPPAQAGEAL
EGIARMATKDVGTDVMNVKRRGRMTSSVRTTPCQP*
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mRNA from alignment at H-elongata_contig1401:6708..10705-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1401.2793.1 ID=mRNA_H-elongata_contig1401.2793.1|Name=mRNA_H-elongata_contig1401.2793.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3998bp|location=Sequence derived from alignment at H-elongata_contig1401:6708..10705- (Himanthalia elongata Himel1 dioecious)
GGTTCGAACGGAGGTGTTCTGCATGTTCGTCGGGGAGCGGTGGCGACGTT
CTCCGTGCCAGTCTATTTCGAGAATAGTTCCGTGGCGATGGGGTATTCCG
GCGGAGCGATGCACGTCGAGGGAACGGTGCGACACGAGCACACCGTTTAG
AATCCATGTCTGTATGGGACCGTACTCATCAAACCGCATGCAGGAATGGA
ATGTACTGCCTCGTACTTAAACCTGTAACACAAGCTCTGACTCTGCCGTA
CCATTAACCGTACCATTAACGTACCATTAACCTTGCAGTGACAAGAGGTT
TTCCATCCCGTCTGTTCATTCGTTAGAAACTTGGGCTCTTGGCTACCGTA
TCACCTGTATTAAGCTCCGTGGGTAGGCACCATGCACTCGATATTTCTCC
TTTCACTACCAAGTGCCGCCATTCCTTGCACACTACAAGCCTTACACACT
AGAAGCTAAATACCATACCGTACCGCATGAGCAGTGCCTACAAGTGTGAT
CTCTTGCACCGGGACACCTATAATCTTCGCCGCATGTGACTGCCACCCTA
GGTGACGTTCGAACACGCCGCTCATTTTGAAGGAAACCAAGCGGGTGGCG
GAGGGGGTTCCTGCGGCGGGGCTGTGTCCATCGGGAGTAACGGACGGGTA
GTTTTCTCGGAATTCACGACCTTCGAGGACAATTCCTCAGAGCGGGGAGG
GGCGTTGTGCAACCTTGGGTCTACCATCTTCTACCGAAGGAGCTTCTTCA
CTGGCAACAGCGCCATTGCCTCTGGCGGTGAGAGGAACAACACATGGATA
TGGTGCCAAGTGCTTTCTTTTGCTGTCGTCTGTCGTGGTAACATGGTAAT
ATGGAATCAGCGTTGCTTGAATTGGACAGAGGGGAATACCCATCCTTGGT
TGTATTGTCTCACTCTATCTCTCTCACACACGCACACTTTTGGGAGGACA
TACACACTTTTGGGAGGATCAATGTGAGAGTAGCCTAGAAGAGCTAGCAT
GACAGAGTCGGATTGCACGGTTATGTGCAATTTAATAAATACACACACAC
ATGCACACAAACACAAAACATATTGTTCAGTCGTTAGTCGTCAGTCTTTA
AACAATTCACTTTTGTCCGTCTTTAGCAAAAAAATCGCTCCTCCCCTCAA
TACCCCAGACAGTACCGACGAAAACGTTAAAACACACGGCGCCCTAAGAA
GCTCTAAGGATAGAATATTCGTTTATTAAGGGCGTGACTGAGTGGTCAAG
GAGTCTACCCTTAATAAACGAACAAAACTGGACCTGGGTTCGAATCCGGA
AAAAGGAATATTCGTTTAGTTTAAGGGGCAGGCTAGGGACTTATACGTGG
CAAGGGGTTCGGTCCCGGGATGGACCTGCGTCATTTGTTTTTGTTTATCA
AGCCTTTATAAGCGAACATAGAATGTAATGTAAGGATAGGATATACATGT
AAAACAATACAACACTAGTGCGACAAAGGCACGTCTCTGGAGTGTGGTAT
CGTACAGATACGTGGTCATTGCATGGTAGAGGTGTGAACACCGGAACCGG
ATAGAGGCGTCTGATGCAGCCTATGACCTTGAGATGCCGTTAGGTCAGAC
GTCACACTTTGGTGGGTGGTGCTAGCGTGAAGGACAAGGCGGCACTGCTG
TACACGCCCGTTCTCCTCTGCATTCTCCGATCGACGCTCGTTTACGCGTT
ATCCGGGCGCTTTTAGATGGATCGGAAGGCGTCGCCGTCGAGGGGGACGG
TGGCGCGGTGTATACGGCGCACGACAGCGAGATGGTGTTCAGGAGGAAGA
GCACGATGCTCGCCAACTCTGCAGACGGGAGCGGCGGAGCATTATACAAC
TCGGGCACGTCTAGCTTCGACACGTCCGCCGCTTTCCAGGGAAACTGCGC
TAAGGTCCGGTACTGTACTGTATAGTGCTGTTCTTCATGCTCCTTTTTAG
ACCACCAAGGAACTTGAGAGGTTTTCACGGTAATCCGGTGGTGTCGGCAT
TGTTGGCCTTGGACAACGTAAATACACTTTCATGCTTTAAATCATTAGTT
TTCCGAGAGGATCCCTCTGCGCCTGACGCCTTAGCCGTGGAAGACCGGGG
CAAGGAATCTCTGACGTCGAGACGGTTCATGCGTGTGTGCGTGCTGCGGT
TTGAGGCACTCTGTGCTGGTGCATTGTGGCGGTAGTCTGTGCTTCGTATT
TCACGGAGAAACCGTGATTTTTTTGTGGTGCAATGGTCGGTCAACTCCCG
CTCAAGAAGAGAGGGCATCGCGCATTTTAATCAACCACCGCGGGCACGGC
GCGATGCTGTTCCCCTCCCACCATCCCATCTTATCCCACCCCACAGGGCA
TCTCGCGACATTCCGACGACCTGCAGACCTTCGAAGATGAGGTCGGGGGG
GGGCATATCTTCAACCGCGGGAATCTGATCGTAAGGGGGGATGCTAGCTT
CCGGGAAGGGGCCACCAGCGCAAACGTGAGAATGAGACTAGAGCCTTTCC
TGCTGCCGCCGTCGTCGTCTTGTCTCTATCGAACGAACTTCCTTGTATTG
TCGCGTCTCCGGAGAGAGAAAAAAATGCAGCTTGTGGAGGCGTTTTTCTG
TCTTTCTTGAGACGAGTACGTTCAAAATGTCTAAACGTGTACCTGCATTG
CGGCCCTCTTCTATCAAGGGAGGCGCCGTCTACACGCTCAGCGGAGAGAG
GACTGTGCTTGGAGGGATCACCACACTGGTCGACAACTCCGCGGTGAGGA
CGCACGCATCGTGTGGCATGCCCCGTCGTAAAATGTAGAGCCTGGGGCCC
CATGCTGGCCTCTCTTGGCCTCATGTGCATGCAGGCGGCGACGACGAGGC
ACTTTGCTGCAAGCCTATTTTCTCATTTTGTTGGAGATACTGGACAAGAC
AAAGTATGGGACATTGGAGATGATGGTTGAGTAAACCATCCAAGGACTAC
AAGACCGACCCATTGCGGTTGGACGGGCTGGCGAGTCGCTCTCGTGGCCC
TTGGAAGGTTTACTAAATGAAATTTCTATTTTGTGTTTCTTTTTTCAATC
GTACGACAAGCTAGCGTGGCTGGGAAAAGGCTCACTCGACATATCTCTAA
TGTATAGCCTAATGTTTGAACAGCGACATCAACATCAGTACACCAGCAAG
TACATTTACGTTGTAACCGATCGGTGCACCTATAGAGGGAGGGTAGTGGC
CTTCCACAGATAAACCGGTCGATTTCATGTTCCGCTTGTGATCATGCACC
ATATCGATGTCAAGGCAGGCCTTGTTCCCAAGCTATAACCTTTGTTCTCA
TATAAAATATTCGCGCACTTCGGTGCCCTTCTCGTCAAAACCAACATCAA
CCAGGACGGGCAATGTAGCCATTTATTTTCGCATCTCGGAGGCGGCGAGG
TTCGGCTAATGACGACACCTCCTCCAGCTCAGGCCGGGGAAGCGCTAGAA
GGAATAGCACGCATGGCGACGAAGGACGTCGGCACTGACGTCATGAATGT
CAAGCGACGTGGGAGAATGACGTCGTCGGTGAGAACTACACCGTGCCAGC
CATGAGCGAGACCTTATCGTATCGTATCGCCAAGTAAGGCACCAAGTTAA
CTCTCATTTAACTTGATTTTAGACGTTGTGCAAGGACATGGTCGAGGGCA
CTTATCTCTCTCTCTCTCTCTCTCGGTGCGGTTAACAGGGATTCGTAGAG
TGTGGGCGTGAATGATAGATGGATTGCATCTGCGGGCCTGTCATAAATGA
CTCGCTTTGAAAAGAAAAAGCAAAAATAAGGCGTGTCCTCGCGAATGTAC
TCAGGCACTGTACGCTTGTATGTATTACCTACGGTAGGCGTGTTTACAAT
AGTCGAGACCACGATAGACACCAAGGGAATTTAAACACCGAACGGATCCT
TTTTGCAGGGGTTGGAGAGTGGTTATTAATTATTTGTTACTTTTTTGTTG
GTACAGTAGTACCGGTACAGTACAGTATAGCAGCAGGAACAAGGGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig1401:6708..10705-

>mRNA_H-elongata_contig1401.2793.1 ID=mRNA_H-elongata_contig1401.2793.1|Name=mRNA_H-elongata_contig1401.2793.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig1401:6708..10705- (Himanthalia elongata Himel1 dioecious)
ATGGGGTATTCCGGCGGAGCGATGCACGTCGAGGGAACGATGGGGTATTC
CGGCGGAGCGATGCACGTCGAGGGAACGGTGACGTTCGAACACGCCGCTC
ATTTTGAAGGAAACCAAGCGGGTGGCGGAGGGGGTTCCTGCGGCGGGGCT
GTGTCCATCGGGAGTAACGGACGGGTAGTTTTCTCGGAATTCACGACCTT
CGAGGACAATTCCTCAGAGCGGGGAGGGGCGTTGTGCAACCTTGGGTCTA
CCATCTTCTACCGAAGGAGCTTCTTCACTGGCAACAGCGCCATTGCCTCT
GGCGGTGACGTTCGAACACGCCGCTCATTTTGAAGGAAACCAAGCGGGTG
GCGGAGGGGGTTCCTGCGGCGGGGCTGTGTCCATCGGGAGTAACGGACGG
GTAGTTTTCTCGGAATTCACGACCTTCGAGGACAATTCCTCAGAGCGGGG
AGGGGCGTTGTGCAACCTTGGGTCTACCATCTTCTACCGAAGGAGCTTCT
TCACTGGCAACAGCGCCATTGCCTCTGGCGATGGATCGGAAGGCGTCGCC
GTCGAGGGGGACGGTGGCGCGGTGTATACGGCGCACGACAGCGAGATGGT
GTTCAGGAGGAAGAGCACGATGCTCGCCAACTCTGCAGACGGGAGCGGCG
GAGCATTATACAACTCGGGCACGTCTAGCTTCGACACGTCCGCCGCTTTC
CAGGGAAACTGCGCTAAGATGGATCGGAAGGCGTCGCCGTCGAGGGGGAC
GGTGGCGCGGTGTATACGGCGCACGACAGCGAGATGGTGTTCAGGAGGAA
GAGCACGATGCTCGCCAACTCTGCAGACGGGAGCGGCGGAGCATTATACA
ACTCGGGCACGTCTAGCTTCGACACGTCCGCCGCTTTCCAGGGAAACTGC
GCTAAGGGCATCTCGCGACATTCCGACGACCTGCAGACCTTCGAAGATGA
GGTCGGGGGGGGGCATATCTTCAACCGCGGGAATCTGATCGTAAGGGGGG
ATGCTAGCTTCCGGGAAGGGGCCACCAGCGCAAACGGCATCTCGCGACAT
TCCGACGACCTGCAGACCTTCGAAGATGAGGTCGGGGGGGGGCATATCTT
CAACCGCGGGAATCTGATCGTAAGGGGGGATGCTAGCTTCCGGGAAGGGG
CCACCAGCGCAAACGGAGGCGCCGTCTACACGCTCAGCGGAGAGAGGACT
GTGCTTGGAGGGATCACCACACTGGTCGACAACTCCGCGGGAGGCGCCGT
CTACACGCTCAGCGGAGAGAGGACTGTGCTTGGAGGGATCACCACACTGG
TCGACAACTCCGCGGACGGGCAATGTAGCCATTTATTTTCGCATCTCGGA
GGCGGCGAGGTTCGGCTAATGACGACACCTCCTCCAGCTCAGGCCGGGGA
AGCGCTAGAAGGAATAGCACGCATGGCGACGAAGGACGTCGGCACTGACG
TCATGAATGTCAAGCGACGTGGGAGAATGACGTCGTCGGTGAGAACTACA
CCGTGCCAGCCATGAGACGGGCAATGTAGCCATTTATTTTCGCATCTCGG
AGGCGGCGAGGTTCGGCTAATGACGACACCTCCTCCAGCTCAGGCCGGGG
AAGCGCTAGAAGGAATAGCACGCATGGCGACGAAGGACGTCGGCACTGAC
GTCATGAATGTCAAGCGACGTGGGAGAATGACGTCGTCGGTGAGAACTAC
ACCGTGCCAGCCATGA
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