mRNA_H-elongata_contig139895.2778.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139895.2778.1
Unique NamemRNA_H-elongata_contig139895.2778.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: D8LF38_ECTSI (Divalent metal transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF38_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.410e-46
Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 1
Query:    1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLT 279
            +TGAYTGYQLLWVLLLAHI+GL+LQSLAAR+GVVTGTHLADVCRT+Y RP ALLLWVM E AIIGSDIQEV+GSAIGLQILFGIPLWVGCLLT
Sbjct:  118 QTGAYTGYQLLWVLLLAHILGLVLQSLAARIGVVTGTHLADVCRTHYDRPAALLLWVMMEVAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLT 210          
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A835YZC9_9STRA (Divalent metal transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC9_9STRA)

HSP 1 Score: 139 bits (351), Expect = 9.860e-37
Identity = 68/93 (73.12%), Postives = 80/93 (86.02%), Query Frame = 1
Query:    1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLT 279
            +TGAYTGYQL+WVLLLAH+ GLLLQS+A+RLGVVTG HLA + R  Y RP +LLLW+M E AIIGSDIQEV+GSAI LQIL G+PLW GC++T
Sbjct:   66 QTGAYTGYQLIWVLLLAHMFGLLLQSMASRLGVVTGNHLAGIARLNYKRPASLLLWLMAELAIIGSDIQEVLGSAIALQILTGVPLWAGCVIT 158          
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A1V9YM96_9STRA (Metal Ion (Mn2-iron) Transporter (Nramp) Family n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YM96_9STRA)

HSP 1 Score: 133 bits (335), Expect = 9.560e-35
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 1
Query:    1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLTG 282
            + GAY GY+L+WVL  A ++G  LQ+LAARLGVVTG HLA+VC T YPR  + +LWVMTE AI+GSDIQEV+GSAI LQILF +PLW+GCL+TG
Sbjct:   81 QAGAYGGYELIWVLFGATVLGFFLQTLAARLGVVTGKHLAEVCHTMYPRWASFILWVMTEIAIVGSDIQEVLGSAIALQILFSLPLWLGCLITG 174          
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A7S2X831_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X831_9EUKA)

HSP 1 Score: 125 bits (313), Expect = 9.720e-35
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1
Query:    1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCL 273
            + GAYTGYQLLWVL ++  +GL  Q LAARLGVVTG +LA +CR  YPR  +L LWVMTE AIIGSDIQE++GSA+  QILFG PLW+GCL
Sbjct:   63 QAGAYTGYQLLWVLFMSTAVGLYFQILAARLGVVTGRNLAQMCRLAYPRWASLGLWVMTELAIIGSDIQEIIGSAVAFQILFGFPLWLGCL 153          
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A1V9ZYU6_9STRA (Metal Ion (Mn2-iron) Transporter (Nramp) Family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYU6_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.100e-34
Identity = 65/94 (69.15%), Postives = 79/94 (84.04%), Query Frame = 1
Query:    1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLTG 282
            + GAY+ YQL+WVLL A +MG  LQ+L+ARLGVVTG HLA+VCR  YPR  + +LW+MTE AI+GSDIQEV+GSAI LQILFG+PLW GCL+TG
Sbjct:  569 QAGAYSRYQLIWVLLGATVMGFFLQTLSARLGVVTGKHLAEVCREMYPRWASYILWIMTEIAIVGSDIQEVLGSAIALQILFGLPLWAGCLVTG 662          
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A7J6RAF5_PEROL (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RAF5_PEROL)

HSP 1 Score: 125 bits (313), Expect = 3.460e-34
Identity = 60/93 (64.52%), Postives = 76/93 (81.72%), Query Frame = 1
Query:    1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLT 279
            ++GA+TGYQ+LWVLLLAHI+GL+LQ L+ RL  VTG HLA+ CR  YPR  A +LW+MTE AIIGSDIQEV+G+AI  ++LF IPLW G ++T
Sbjct:   89 QSGAFTGYQMLWVLLLAHIVGLILQVLSCRLAAVTGEHLAEHCRARYPRWTARVLWIMTEIAIIGSDIQEVLGTAIAFRVLFNIPLWAGTIIT 181          
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A5D6XI84_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI84_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.200e-33
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1
Query:    1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLTG 282
            + GAY GYQL+WVL  A +MG  LQ LAARLGVVTG +LA++C   YPR  +L+LW+MTE AI+GSDIQEV+GSAI  Q+LFG PLWVGCL+TG
Sbjct:  104 QAGAYGGYQLIWVLFAATVMGFFLQVLAARLGVVTGKNLAEMCTARYPRWASLVLWIMTEIAIVGSDIQEVLGSAIAFQLLFGFPLWVGCLVTG 197          
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A7J6UGL9_PEROL (Uncharacterized protein (Fragment) n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6UGL9_PEROL)

HSP 1 Score: 125 bits (313), Expect = 2.800e-33
Identity = 60/93 (64.52%), Postives = 76/93 (81.72%), Query Frame = 1
Query:    1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLT 279
            ++GA+TGYQ+LWVLLLAHI+GL+LQ L+ RL  VTG HLA+ CR  YPR  A +LW+MTE AIIGSDIQEV+G+AI  ++LF IPLW G ++T
Sbjct:   89 QSGAFTGYQMLWVLLLAHIVGLILQVLSCRLAAVTGEHLAEHCRARYPRWTARVLWIMTEVAIIGSDIQEVLGTAIAFRVLFNIPLWAGTIIT 181          
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A418EA93_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EA93_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.750e-33
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLT 279
            + GAY GYQL+WVLL A IMG  LQ L+ARLGVVTG +LA++C   YPR  + +LW M E AI+GSDIQEV+GSAI LQILF +PLW+GCL+T
Sbjct:   99 QAGAYGGYQLIWVLLGATIMGFFLQVLSARLGVVTGKNLAEMCHLMYPRWTSRVLWFMAEVAIVGSDIQEVLGSAIALQILFKLPLWIGCLIT 191          
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Match: A0A8K1CE46_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE46_PYTOL)

HSP 1 Score: 128 bits (322), Expect = 7.340e-33
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1
Query:    1 KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRPIALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLTG 282
            + GAY GYQL+WVL  + +MG  LQ LAARLGVVTG +LA+VC + YPR  +L+LWVMTE AIIGSDIQEV+GSAI  QILF  PLW+GCL+TG
Sbjct:   97 QAGAYGGYQLIWVLFASTVMGFYLQILAARLGVVTGKNLAEVCTSEYPRWASLVLWVMTEIAIIGSDIQEVLGSAIAFQILFNFPLWLGCLITG 190          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139895.2778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF38_ECTSI2.410e-4689.25Divalent metal transporter n=2 Tax=Ectocarpus TaxI... [more]
A0A835YZC9_9STRA9.860e-3773.12Divalent metal transporter n=1 Tax=Tribonema minus... [more]
A0A1V9YM96_9STRA9.560e-3568.09Metal Ion (Mn2-iron) Transporter (Nramp) Family n=... [more]
A0A7S2X831_9EUKA9.720e-3568.13Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A1V9ZYU6_9STRA1.100e-3469.15Metal Ion (Mn2-iron) Transporter (Nramp) Family n=... [more]
A0A7J6RAF5_PEROL3.460e-3464.52Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
A0A5D6XI84_9STRA2.200e-3367.02Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A7J6UGL9_PEROL2.800e-3364.52Uncharacterized protein (Fragment) n=2 Tax=Perkins... [more]
A0A418EA93_9STRA5.750e-3365.59Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A8K1CE46_PYTOL7.340e-3368.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139895contigH-elongata_contig139895:298..579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.4e-39
Seed eggNOG ortholog2880.D8LF38
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055,ko:K21398
KEGG TC2.A.55.2.1,2.A.55.2.2
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,ko04142,ko04216,ko04978,map00500,map01100,map04142,map04216,map04978
EggNOG free text desc.transition metal ion homeostasis
EggNOG OGsCOG1914@1,KOG1291@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.P
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko02000
Hectar predicted targeting categorysignal peptide
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.7876577-CDS-H-elongata_contig139895:297..5791622929831.7876577-CDS-H-elongata_contig139895:297..579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139895 298..579 -
1691679175.608229-CDS-H-elongata_contig139895:297..5791691679175.608229-CDS-H-elongata_contig139895:297..579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139895 298..579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139895.2778.1prot_H-elongata_contig139895.2778.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139895 298..579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139895.2778.1

>prot_H-elongata_contig139895.2778.1 ID=prot_H-elongata_contig139895.2778.1|Name=mRNA_H-elongata_contig139895.2778.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
KTGAYTGYQLLWVLLLAHIMGLLLQSLAARLGVVTGTHLADVCRTYYPRP
IALLLWVMTESAIIGSDIQEVVGSAIGLQILFGIPLWVGCLLTG
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mRNA from alignment at H-elongata_contig139895:298..579-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139895.2778.1 ID=mRNA_H-elongata_contig139895.2778.1|Name=mRNA_H-elongata_contig139895.2778.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig139895:298..579- (Himanthalia elongata Himel1 dioecious)
AAGACGGGAGCGTACACGGGCTACCAGCTGCTGTGGGTTTTGCTGCTGGC GCACATAATGGGTCTGTTGCTGCAGAGCCTGGCGGCGAGGCTCGGGGTCG TGACGGGGACCCACCTCGCTGATGTGTGCCGCACGTACTACCCGCGCCCG ATCGCGCTGCTGCTATGGGTGATGACGGAGTCCGCTATCATCGGGAGCGA CATCCAGGAGGTGGTCGGGTCGGCCATTGGCCTTCAGATCCTCTTCGGTA TCCCTCTCTGGGTGGGGTGCCTCCTCACGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig139895:298..579-

>mRNA_H-elongata_contig139895.2778.1 ID=mRNA_H-elongata_contig139895.2778.1|Name=mRNA_H-elongata_contig139895.2778.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig139895:298..579- (Himanthalia elongata Himel1 dioecious)
AAGACGGGAGCGTACACGGGCTACCAGCTGCTGTGGGTTTTGCTGCTGGC
GCACATAATGGGTCTGTTGCTGCAGAGCCTGGCGGCGAGGCTCGGGGTCG
TGACGGGGACCCACCTCGCTGATGTGTGCCGCACGTACTACCCGCGCCCG
ATCGCGCTGCTGCTATGGGTGATGACGGAGTCCGCTATCATCGGGAGCGA
CATCCAGGAGGTGGTCGGGTCGGCCATTGGCCTTCAGATCCTCTTCGGTA
TCCCTCTCTGGGTGGGGTGCCTCCTCACGGGTAAGACGGGAGCGTACACG
GGCTACCAGCTGCTGTGGGTTTTGCTGCTGGCGCACATAATGGGTCTGTT
GCTGCAGAGCCTGGCGGCGAGGCTCGGGGTCGTGACGGGGACCCACCTCG
CTGATGTGTGCCGCACGTACTACCCGCGCCCGATCGCGCTGCTGCTATGG
GTGATGACGGAGTCCGCTATCATCGGGAGCGACATCCAGGAGGTGGTCGG
GTCGGCCATTGGCCTTCAGATCCTCTTCGGTATCCCTCTCTGGGTGGGGT
GCCTCCTCACGGGT
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