mRNA_H-elongata_contig13986.2775.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13986.2775.1
Unique NamemRNA_H-elongata_contig13986.2775.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13986.2775.1 vs. uniprot
Match: A0A6H5L4T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.930e-19
Identity = 122/398 (30.65%), Postives = 169/398 (42.46%), Query Frame = 1 
Query:   16 RFEVERLKTRRQVVNLLEDAEAIEAATLR------AAKTNQSRKDDQNSA----NAYKEPNGRTRRARGANRVSDVRRDGG-------ESNAFVEP-QPGEDPNFIGTEKMRFMKYAYKHVDSHKAFERRRNAGTKRADEDRYDELCKQGFPS-GVVNLEVTPKYADGSPTLSTTRATSGVGEVQGKHNRGIWREGEALASPRRCGRRRLLRQKQGILMDLKGVISRQAEALGRLAEGYHDPCGQVANRPGRNDTINKQRNPGIRGAHYDTDNCRIT-NKRTSSNGTRSYKGDSRMQNTAKVSRSTAESSNVTSRLR-------TQPQDNATSTFLSLGGRWGGHMGAGISKRRS-------EATSASYATYCNERRRNGDTGYRTGKRRWAVPLLPI 1107
            RF  ER + +  +  L++DA A+EAA L+         T+ +R D   +A    NA  E  G    A GA     V    G       +SNA++EP  P +D NFI  ++MRFMKY Y H++     +      T    E++   +                                   G V G     +  +G           R+LL +K+GIL+++KGV++RQAEAL RL +   +    VA    R       R      A   T +   T N  TS   TRS    S    ++ + +S A   +  +R +       T PQDN TS FL+ GGRWGG      S+RRS        A+SASYATYC   R  G  G   G+R  AVP LP+
Sbjct:   49 RFIAERRQDQAHISELVQDANAVEAALLKEQQPLQGGNTSLARDDPCAAASRAYNAPSEGGGDAGGAAGAVDTGGVEGSVGVRRILSTKSNAYMEPADPKDDSNFISLDQMRFMKYMYSHIEGQNGAKAHTRLTTNVVREEKQIAVKPNAHKQRXXXXXXXXXXXXXXXXXXXXXXXXXXAGPVAGSSAPPLLSKGGEGGRNSGSRERQLLERKRGILLEMKGVVNRQAEALDRLVQSSAN--ANVAGNGRRRGGDRNSRKSRPSQASVSTSSSLFTPNGATSGQNTRSG---SCPHISSHIKKSPAMLPSPLTRPKAELPMPPTVPQDNGTSAFLARGGRWGGE-----SRRRSWRRDSVTTASSASYATYCKRDRDQGMLGI--GRRPAAVPALPV 434
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BLAST of mRNA_H-elongata_contig13986.2775.1 vs. uniprot
Match: D7G1P3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P3_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 9.100e-18
Identity = 122/400 (30.50%), Postives = 171/400 (42.75%), Query Frame = 1 
Query:   16 RFEVERLKTRRQVVNLLEDAEAIEAATLRAAKTNQSRKDDQNSANAYKEPNGRTRRARGANRVSDVRRDGG-------------ESNAFVEP-QPGEDPNFIGTEKMRFMKYAYKHVDSHKAFERRRNAGTKRADEDRYDELCKQGFPSGVVNLEVTPKYADGSPTLSTTRATSGVGEVQGKHNRG------IWREGEALASPRRCGRRRLLRQKQGILMDLKGVISRQAEALGRLAEGYHDPCGQVANRPGRN---DTINKQRNPGIRGAHYDTDNCRITNK-RTSSNGTRS--------YKGDSRMQNTAKVSRSTAESSNVTSRLRTQPQDNATSTFLSLGGRWGGHMGAGISKRRS--EATSASYATYCNERRRNGDTGYRTG--KRRWAVPLLPI 1107
            RF  ER + +  +  L++DA A+EAA L+  +  Q R              G    ++G          GG             +SNA+VE  +P +D  FI  ++MRFMKY Y H+D  KA +    A T+   +   +E      P+                      A++G G  +     G      I + GE   +      R+LL +K+GIL+++KGV+SRQAEAL RL +   +    VA   GR    D  ++Q  P    A   T +   T K   S   TRS           +S     +  +R TA          T P DN TS FL+ GGRWGG    G  +  S   A+SASYATYC   +R+ D G   G  +R  AVP LP+
Sbjct:   49 RFTAERRQDQAHISGLVQDANAVEAALLKEQQPLQGRNSQGRDDPCAAASRGDNASSQGGGDAGGAVNTGGVEGSVGVRRIFSTKSNAYVETAEPKDDSKFISLDQMRFMKYVYSHIDGQKAAK----AHTRLMTDVVREEKQMAARPNAHEQXXXXXXXXXXXXXXKRMFASNGAGSRRAGPVAGSSVPPVISKAGEGGCNSG-SRERQLLERKRGILLEMKGVVSRQAEALDRLVQSSAN--ANVAAENGRRRGGDHNSRQSRPSH--ASVSTSSSLFTPKGEKSGRNTRSGSCPDISGLTNNSPAMLPSSATRPTA----ALPMPPTVPPDNVTSAFLARGGRWGGESRRGSWRCDSVTTASSASYATYC---KRDRDQGRVLGISRRPPAVPALPV 432
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13986.2775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4T8_9PHAE5.930e-1930.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1P3_ECTSI9.100e-1830.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13986contigH-elongata_contig13986:332..1731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000500.1
Exons2
Model size1119
Cds size1119
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.4875484-CDS-H-elongata_contig13986:331..6221622929831.4875484-CDS-H-elongata_contig13986:331..622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13986 332..622 +
1691679175.4759927-CDS-H-elongata_contig13986:331..6221691679175.4759927-CDS-H-elongata_contig13986:331..622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13986 332..622 +
1622929831.505648-CDS-H-elongata_contig13986:903..17311622929831.505648-CDS-H-elongata_contig13986:903..1731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13986 904..1731 +
1691679175.4861584-CDS-H-elongata_contig13986:903..17311691679175.4861584-CDS-H-elongata_contig13986:903..1731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13986 904..1731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13986.2775.1prot_H-elongata_contig13986.2775.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13986 332..1731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13986.2775.1

>prot_H-elongata_contig13986.2775.1 ID=prot_H-elongata_contig13986.2775.1|Name=mRNA_H-elongata_contig13986.2775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=373bp
MIQFHRFEVERLKTRRQVVNLLEDAEAIEAATLRAAKTNQSRKDDQNSAN
AYKEPNGRTRRARGANRVSDVRRDGGESNAFVEPQPGEDPNFIGTEKMRF
MKYAYKHVDSHKAFERRRNAGTKRADEDRYDELCKQGFPSGVVNLEVTPK
YADGSPTLSTTRATSGVGEVQGKHNRGIWREGEALASPRRCGRRRLLRQK
QGILMDLKGVISRQAEALGRLAEGYHDPCGQVANRPGRNDTINKQRNPGI
RGAHYDTDNCRITNKRTSSNGTRSYKGDSRMQNTAKVSRSTAESSNVTSR
LRTQPQDNATSTFLSLGGRWGGHMGAGISKRRSEATSASYATYCNERRRN
GDTGYRTGKRRWAVPLLPIGGK*
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mRNA from alignment at H-elongata_contig13986:332..1731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13986.2775.1 ID=mRNA_H-elongata_contig13986.2775.1|Name=mRNA_H-elongata_contig13986.2775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1400bp|location=Sequence derived from alignment at H-elongata_contig13986:332..1731+ (Himanthalia elongata Himel1 dioecious)
ATGATACAATTTCATAGGTTTGAAGTCGAACGGCTCAAGACTCGTAGACA
AGTAGTTAACCTCCTGGAAGACGCGGAAGCGATTGAAGCTGCCACGCTAC
GAGCAGCAAAAACCAACCAATCGCGTAAAGACGACCAGAACAGCGCAAAT
GCATATAAAGAACCAAACGGTCGGACCAGAAGAGCAAGGGGTGCGAATAG
GGTGAGCGATGTTCGCCGCGACGGTGGGGAGTCAAATGCGTTTGTGGAGC
CACAGCCGGGGGAAGATCCAAATTTCATTGGCACTGAAAAGGTGAACGCA
AACGATATTTTATCCTGAATCTCGGTTGCCCCAACACGTGTGAGGGAAAA
TATAGTTTACAAACATGAAAGTGTCCAAACGGCAAATTCTCGAGATTTTG
CTGCAAGAATTGCACTCACGCCATGAGGTGGGACGAAATAATCTTAAGTA
GGCGGGCCTCATTTAAGTGCAACCATGGCACGTAACGAGTACGAGGAGAG
CGTTTTTATTTTCAATGAGATAACTGAAAGCGAAACGGGAAAACTTTGAT
CGCGTCGGGAACCCGCATGCAGATGCGCTTCATGAAGTATGCGTACAAGC
ACGTGGACAGCCACAAGGCATTCGAGAGACGAAGAAATGCCGGGACCAAA
CGAGCCGACGAAGATCGCTATGACGAGCTTTGCAAGCAAGGTTTTCCCAG
CGGGGTTGTCAATCTTGAAGTCACACCGAAATACGCCGACGGTAGCCCTA
CCTTGTCAACGACGAGAGCAACATCAGGAGTAGGCGAGGTACAAGGCAAG
CACAATCGAGGGATTTGGAGGGAGGGTGAAGCGCTGGCATCGCCACGGCG
TTGTGGCCGCAGACGACTTTTGCGACAGAAGCAAGGAATCTTAATGGATC
TGAAGGGGGTCATCAGCCGCCAAGCGGAAGCACTGGGTCGTCTGGCGGAA
GGTTACCACGACCCCTGCGGGCAAGTGGCCAACAGACCTGGCAGGAACGA
CACTATTAACAAGCAAAGGAATCCTGGAATACGCGGGGCTCACTACGACA
CTGACAATTGCAGAATTACCAACAAGAGGACCAGTTCCAATGGGACACGG
TCATATAAGGGAGATTCAAGAATGCAAAATACAGCAAAGGTCTCGCGTTC
CACTGCTGAATCTTCAAACGTTACGTCGCGTTTACGTACCCAACCCCAAG
ATAACGCCACTTCGACGTTTTTGTCGCTCGGGGGGCGGTGGGGAGGTCAC
ATGGGGGCTGGGATTTCGAAGCGGCGTTCCGAGGCTACTTCGGCGTCGTA
CGCGACGTACTGCAATGAACGCCGGCGGAACGGAGACACGGGATACAGGA
CTGGTAAGCGCCGATGGGCGGTGCCTCTGCTTCCTATTGGGGGTAAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig13986:332..1731+

>mRNA_H-elongata_contig13986.2775.1 ID=mRNA_H-elongata_contig13986.2775.1|Name=mRNA_H-elongata_contig13986.2775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2238bp|location=Sequence derived from alignment at H-elongata_contig13986:332..1731+ (Himanthalia elongata Himel1 dioecious)
ATGATACAATTTCATAGGTTTGAAGTCGAACGGCTCAAGACTCGTAGACA
AGTAGTTAACCTCCTGGAAGACGCGGAAGCGATTGAAGCTGCCACGCTAC
GAGCAGCAAAAACCAACCAATCGCGTAAAGACGACCAGAACAGCGCAAAT
GCATATAAAGAACCAAACGGTCGGACCAGAAGAGCAAGGGGTGCGAATAG
GGTGAGCGATGTTCGCCGCGACGGTGGGGAGTCAAATGCGTTTGTGGAGC
CACAGCCGGGGGAAGATCCAAATTTCATTGGCACTGAAAAGATGATACAA
TTTCATAGGTTTGAAGTCGAACGGCTCAAGACTCGTAGACAAGTAGTTAA
CCTCCTGGAAGACGCGGAAGCGATTGAAGCTGCCACGCTACGAGCAGCAA
AAACCAACCAATCGCGTAAAGACGACCAGAACAGCGCAAATGCATATAAA
GAACCAAACGGTCGGACCAGAAGAGCAAGGGGTGCGAATAGGGTGAGCGA
TGTTCGCCGCGACGGTGGGGAGTCAAATGCGTTTGTGGAGCCACAGCCGG
GGGAAGATCCAAATTTCATTGGCACTGAAAAGATGCGCTTCATGAAGTAT
GCGTACAAGCACGTGGACAGCCACAAGGCATTCGAGAGACGAAGAAATGC
CGGGACCAAACGAGCCGACGAAGATCGCTATGACGAGCTTTGCAAGCAAG
GTTTTCCCAGCGGGGTTGTCAATCTTGAAGTCACACCGAAATACGCCGAC
GGTAGCCCTACCTTGTCAACGACGAGAGCAACATCAGGAGTAGGCGAGGT
ACAAGGCAAGCACAATCGAGGGATTTGGAGGGAGGGTGAAGCGCTGGCAT
CGCCACGGCGTTGTGGCCGCAGACGACTTTTGCGACAGAAGCAAGGAATC
TTAATGGATCTGAAGGGGGTCATCAGCCGCCAAGCGGAAGCACTGGGTCG
TCTGGCGGAAGGTTACCACGACCCCTGCGGGCAAGTGGCCAACAGACCTG
GCAGGAACGACACTATTAACAAGCAAAGGAATCCTGGAATACGCGGGGCT
CACTACGACACTGACAATTGCAGAATTACCAACAAGAGGACCAGTTCCAA
TGGGACACGGTCATATAAGGGAGATTCAAGAATGCAAAATACAGCAAAGG
TCTCGCGTTCCACTGCTGAATCTTCAAACGTTACGTCGCGTTTACGTACC
CAACCCCAAGATAACGCCACTTCGACGTTTTTGTCGCTCGGGGGGCGGTG
GGGAGGTCACATGGGGGCTGGGATTTCGAAGCGGCGTTCCGAGGCTACTT
CGGCGTCGTACGCGACGTACTGCAATGAACGCCGGCGGAACGGAGACACG
GGATACAGGACTGGTAAGCGCCGATGGGCGGTGCCTCTGCTTCCTATTGG
GGGTAAATAGATGCGCTTCATGAAGTATGCGTACAAGCACGTGGACAGCC
ACAAGGCATTCGAGAGACGAAGAAATGCCGGGACCAAACGAGCCGACGAA
GATCGCTATGACGAGCTTTGCAAGCAAGGTTTTCCCAGCGGGGTTGTCAA
TCTTGAAGTCACACCGAAATACGCCGACGGTAGCCCTACCTTGTCAACGA
CGAGAGCAACATCAGGAGTAGGCGAGGTACAAGGCAAGCACAATCGAGGG
ATTTGGAGGGAGGGTGAAGCGCTGGCATCGCCACGGCGTTGTGGCCGCAG
ACGACTTTTGCGACAGAAGCAAGGAATCTTAATGGATCTGAAGGGGGTCA
TCAGCCGCCAAGCGGAAGCACTGGGTCGTCTGGCGGAAGGTTACCACGAC
CCCTGCGGGCAAGTGGCCAACAGACCTGGCAGGAACGACACTATTAACAA
GCAAAGGAATCCTGGAATACGCGGGGCTCACTACGACACTGACAATTGCA
GAATTACCAACAAGAGGACCAGTTCCAATGGGACACGGTCATATAAGGGA
GATTCAAGAATGCAAAATACAGCAAAGGTCTCGCGTTCCACTGCTGAATC
TTCAAACGTTACGTCGCGTTTACGTACCCAACCCCAAGATAACGCCACTT
CGACGTTTTTGTCGCTCGGGGGGCGGTGGGGAGGTCACATGGGGGCTGGG
ATTTCGAAGCGGCGTTCCGAGGCTACTTCGGCGTCGTACGCGACGTACTG
CAATGAACGCCGGCGGAACGGAGACACGGGATACAGGACTGGTAAGCGCC
GATGGGCGGTGCCTCTGCTTCCTATTGGGGGTAAATAG
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