prot_H-elongata_contig139786.2769.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig139786.2769.1
Unique Nameprot_H-elongata_contig139786.2769.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length41
Homology
BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A6H5K552_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K552_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.650e-16
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSDP 38
            +GVTVPFYFICLLHLANEKGL+LEGR DLLDFSV+SDP
Sbjct:  327 TGVTVPFYFICLLHLANEKGLKLEGRDDLLDFSVASDP 364          
BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.390e-14
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSDP 38
            +GVTV FYFICLLHLANEKGL+LEGR DLLDFSV+SDP
Sbjct:  796 TGVTVSFYFICLLHLANEKGLKLEGRDDLLDFSVASDP 833          
BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A835Z1S3_9STRA (Condensin complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.410e-11
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSS 36
            SGVTV +YFICLLHLANEKGLRLEG+ DL+DF + +
Sbjct:  804 SGVTVSYYFICLLHLANEKGLRLEGQDDLMDFGIGA 839          
BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A7S3GUA6_9STRA (Condensin complex subunit 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUA6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.940e-10
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSD 37
              VT+PFYFICLLHLANE GLR+E R+D+ D  +S D
Sbjct:   64 QDVTLPFYFICLLHLANEHGLRIEDREDMSDLVISMD 100          
BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A7S2SDZ0_9STRA (Condensin complex subunit 2 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SDZ0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.060e-9
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0
Query:    2 GVTVPFYFICLLHLANEKGLRLEGRQDLLDFSV 34
             VTVPFYFICLLHLANE GL LEGR+DL DF +
Sbjct:  580 NVTVPFYFICLLHLANENGLELEGREDLSDFII 612          
BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A3L6USJ3_9STRA (Condensin complex subunit 2 (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6USJ3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.980e-9
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    2 GVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSDP 38
             VTV FYFIC+LHLAN+KGL L G+ D+ DF +  DP
Sbjct:   78 NVTVSFYFICMLHLANDKGLELVGQDDMRDFQILHDP 114          
BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A7S1XKV0_9STRA (Condensin complex subunit 2 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKV0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.090e-9
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    1 SGVTVPFYFICLLHLANEKGLRLEG--RQDLLDFSV 34
            +GVTVPFYFICLLHLANEKGL+LE   R DL DF +
Sbjct:  464 TGVTVPFYFICLLHLANEKGLKLENPNRADLTDFRI 499          
BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A024UH53_9STRA (Condensin complex subunit 2 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UH53_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.940e-9
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 0
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSDP 38
            S VTV FYFIC+LHLAN+KGL L G+ D+ DF +  DP
Sbjct:  828 SNVTVSFYFICMLHLANDKGLELVGQDDMRDFKILHDP 865          
BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A485LHY8_9STRA (Condensin complex subunit 2 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHY8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.940e-9
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 0
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSDP 38
            S VTV FYFIC+LHLAN+KGL L G+ D+ DF +  DP
Sbjct:  808 SNVTVSFYFICMLHLANDKGLELVGQDDMRDFKILHDP 845          
BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A7S3LMK8_9STRA (Condensin complex subunit 2 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LMK8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.950e-9
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 0
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVS 35
            S VT+P+YFIC+LHLANEKGL L+G +DL DF ++
Sbjct:  555 SSVTIPYYFICVLHLANEKGLELKGSEDLSDFIIN 589          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K552_9PHAE8.650e-1689.47Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
D8LD70_ECTSI1.390e-1486.84Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
A0A835Z1S3_9STRA3.410e-1175.00Condensin complex subunit 2 n=1 Tax=Tribonema minu... [more]
A0A7S3GUA6_9STRA6.940e-1064.86Condensin complex subunit 2 n=1 Tax=Spumella elong... [more]
A0A7S2SDZ0_9STRA1.060e-978.79Condensin complex subunit 2 n=1 Tax=labyrinthulid ... [more]
A0A3L6USJ3_9STRA3.980e-962.16Condensin complex subunit 2 (Fragment) n=3 Tax=Aph... [more]
A0A7S1XKV0_9STRA5.090e-975.00Condensin complex subunit 2 n=1 Tax=Phaeomonas par... [more]
A0A024UH53_9STRA6.940e-963.16Condensin complex subunit 2 n=1 Tax=Aphanomyces in... [more]
A0A485LHY8_9STRA6.940e-963.16Condensin complex subunit 2 n=1 Tax=Aphanomyces st... [more]
A0A7S3LMK8_9STRA6.950e-965.71Condensin complex subunit 2 n=1 Tax=Aplanochytrium... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022816Condensin complex subunit 2/barrenPFAMPF05786Cnd2coord: 4..35
e-value: 8.0E-10
score: 38.0
IPR022816Condensin complex subunit 2/barrenPANTHERPTHR13108FAMILY NOT NAMEDcoord: 3..37
NoneNo IPR availablePANTHERPTHR13108:SF9CONDENSIN COMPLEX SUBUNIT 2coord: 3..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139786contigH-elongata_contig139786:351..473 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139786.2769.1mRNA_H-elongata_contig139786.2769.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig139786 351..473 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig139786.2769.1 ID=prot_H-elongata_contig139786.2769.1|Name=mRNA_H-elongata_contig139786.2769.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSDPCC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022816Condensin_barren_su2