mRNA_H-elongata_contig139786.2769.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139786.2769.1
Unique NamemRNA_H-elongata_contig139786.2769.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A6H5K552_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K552_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.650e-16
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSDP 114
            +GVTVPFYFICLLHLANEKGL+LEGR DLLDFSV+SDP
Sbjct:  327 TGVTVPFYFICLLHLANEKGLKLEGRDDLLDFSVASDP 364
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BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.390e-14
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSDP 114
            +GVTV FYFICLLHLANEKGL+LEGR DLLDFSV+SDP
Sbjct:  796 TGVTVSFYFICLLHLANEKGLKLEGRDDLLDFSVASDP 833
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BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A835Z1S3_9STRA (Condensin complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.410e-11
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSS 108
            SGVTV +YFICLLHLANEKGLRLEG+ DL+DF + +
Sbjct:  804 SGVTVSYYFICLLHLANEKGLRLEGQDDLMDFGIGA 839
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BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A7S3GUA6_9STRA (Condensin complex subunit 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUA6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.940e-10
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSD 111
              VT+PFYFICLLHLANE GLR+E R+D+ D  +S D
Sbjct:   64 QDVTLPFYFICLLHLANEHGLRIEDREDMSDLVISMD 100
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BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A7S2SDZ0_9STRA (Condensin complex subunit 2 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SDZ0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.060e-9
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    4 GVTVPFYFICLLHLANEKGLRLEGRQDLLDFSV 102
             VTVPFYFICLLHLANE GL LEGR+DL DF +
Sbjct:  580 NVTVPFYFICLLHLANENGLELEGREDLSDFII 612
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BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A3L6USJ3_9STRA (Condensin complex subunit 2 (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6USJ3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.980e-9
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    4 GVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSDP 114
             VTV FYFIC+LHLAN+KGL L G+ D+ DF +  DP
Sbjct:   78 NVTVSFYFICMLHLANDKGLELVGQDDMRDFQILHDP 114
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BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A7S1XKV0_9STRA (Condensin complex subunit 2 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKV0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.090e-9
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 SGVTVPFYFICLLHLANEKGLRLEG--RQDLLDFSV 102
            +GVTVPFYFICLLHLANEKGL+LE   R DL DF +
Sbjct:  464 TGVTVPFYFICLLHLANEKGLKLENPNRADLTDFRI 499
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BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A024UH53_9STRA (Condensin complex subunit 2 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UH53_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.940e-9
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSDP 114
            S VTV FYFIC+LHLAN+KGL L G+ D+ DF +  DP
Sbjct:  828 SNVTVSFYFICMLHLANDKGLELVGQDDMRDFKILHDP 865
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BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A485LHY8_9STRA (Condensin complex subunit 2 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHY8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.940e-9
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSDP 114
            S VTV FYFIC+LHLAN+KGL L G+ D+ DF +  DP
Sbjct:  808 SNVTVSFYFICMLHLANDKGLELVGQDDMRDFKILHDP 845
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BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Match: A0A7S3LMK8_9STRA (Condensin complex subunit 2 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LMK8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.950e-9
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVS 105
            S VT+P+YFIC+LHLANEKGL L+G +DL DF ++
Sbjct:  555 SSVTIPYYFICVLHLANEKGLELKGSEDLSDFIIN 589
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139786.2769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K552_9PHAE8.650e-1689.47Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
D8LD70_ECTSI1.390e-1486.84Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
A0A835Z1S3_9STRA3.410e-1175.00Condensin complex subunit 2 n=1 Tax=Tribonema minu... [more]
A0A7S3GUA6_9STRA6.940e-1064.86Condensin complex subunit 2 n=1 Tax=Spumella elong... [more]
A0A7S2SDZ0_9STRA1.060e-978.79Condensin complex subunit 2 n=1 Tax=labyrinthulid ... [more]
A0A3L6USJ3_9STRA3.980e-962.16Condensin complex subunit 2 (Fragment) n=3 Tax=Aph... [more]
A0A7S1XKV0_9STRA5.090e-975.00Condensin complex subunit 2 n=1 Tax=Phaeomonas par... [more]
A0A024UH53_9STRA6.940e-963.16Condensin complex subunit 2 n=1 Tax=Aphanomyces in... [more]
A0A485LHY8_9STRA6.940e-963.16Condensin complex subunit 2 n=1 Tax=Aphanomyces st... [more]
A0A7S3LMK8_9STRA6.950e-965.71Condensin complex subunit 2 n=1 Tax=Aplanochytrium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139786contigH-elongata_contig139786:351..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue2.9e-12
Seed eggNOG ortholog2880.D8LD70
Preferred nameBRN1
KEGG koko:K06676
KEGG Pathwayko04111,map04111
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0001671,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005737,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007080,GO:0008047,GO:0008150,GO:0008608,GO:0009987,GO:0010911,GO:0010912,GO:0016043,GO:0019899,GO:0022402,GO:0030234,GO:0030261,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0033553,GO:0034506,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044547,GO:0044815,GO:0048285,GO:0050000,GO:0050790,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060589,GO:0060590,GO:0061638,GO:0065007,GO:0065009,GO:0070013,GO:0070058,GO:0071103,GO:0071840,GO:0072586,GO:0072587,GO:0098687,GO:0098772,GO:0098813,GO:0140014,GO:1903047,GO:2000371,GO:2000373
EggNOG free text desc.DNA topoisomerase (ATP-hydrolyzing) activator activity
EggNOG OGsCOG5229@1,KOG2328@2759
COG Functional cat.BD
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.0340312-CDS-H-elongata_contig139786:350..4731622929831.0340312-CDS-H-elongata_contig139786:350..473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139786 351..473 +
1691679175.2733848-CDS-H-elongata_contig139786:350..4731691679175.2733848-CDS-H-elongata_contig139786:350..473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139786 351..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139786.2769.1prot_H-elongata_contig139786.2769.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139786 351..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139786.2769.1

>prot_H-elongata_contig139786.2769.1 ID=prot_H-elongata_contig139786.2769.1|Name=mRNA_H-elongata_contig139786.2769.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
SGVTVPFYFICLLHLANEKGLRLEGRQDLLDFSVSSDPCC*
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mRNA from alignment at H-elongata_contig139786:351..473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139786.2769.1 ID=mRNA_H-elongata_contig139786.2769.1|Name=mRNA_H-elongata_contig139786.2769.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig139786:351..473+ (Himanthalia elongata Himel1 dioecious)
TCCGGAGTGACAGTCCCGTTCTACTTCATCTGCCTTCTTCACCTAGCCAA
CGAAAAGGGGCTGAGGCTAGAAGGTCGCCAGGATCTCCTGGATTTCTCGG
TGTCAAGCGATCCTTGCTGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig139786:351..473+

>mRNA_H-elongata_contig139786.2769.1 ID=mRNA_H-elongata_contig139786.2769.1|Name=mRNA_H-elongata_contig139786.2769.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig139786:351..473+ (Himanthalia elongata Himel1 dioecious)
TCCGGAGTGACAGTCCCGTTCTACTTCATCTGCCTTCTTCACCTAGCCAA
CGAAAAGGGGCTGAGGCTAGAAGGTCGCCAGGATCTCCTGGATTTCTCGG
TGTCAAGCGATCCTTGCTGCTAGTCCGGAGTGACAGTCCCGTTCTACTTC
ATCTGCCTTCTTCACCTAGCCAACGAAAAGGGGCTGAGGCTAGAAGGTCG
CCAGGATCTCCTGGATTTCTCGGTGTCAAGCGATCCTTGCTGCTAG
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