mRNA_H-elongata_contig13962.2759.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13962.2759.1
Unique NamemRNA_H-elongata_contig13962.2759.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A6H5K2Q3_9PHAE (GPN-loop GTPase 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2Q3_9PHAE)

HSP 1 Score: 428 bits (1101), Expect = 2.380e-148
Identity = 226/292 (77.40%), Postives = 242/292 (82.88%), Query Frame = 2
Query:    2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNYNVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDK-RRDGETPEHKVEAIAQEELADSDG-----GTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPD----SRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDDV 847
            DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELD FD++EYI+FDCPGQVELYSHVPVMRN+LDQLKSWNYNVCAVFLLDATFITDPAKF+SGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQ+GVHFGTAPF++  R GE                        G   A+ G  A  A+R +ELQPRGRL  +G       ++   LP+LARLTEAIS VLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDD+
Sbjct:   56 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSWNYNVCAVFLLDATFITDPAKFMSGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQRGVHFGTAPFNRGERGGEEDXXXXXXXXXXXXXXXXXXXXXXGEESADVGTGATTAQR-EELQPRGRLQVLGAQGGVEGAQRGPLPRLARLTEAISGVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDDI 346          
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A835YPS9_9STRA (GPN-loop GTPase 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS9_9STRA)

HSP 1 Score: 291 bits (744), Expect = 2.310e-94
Identity = 156/298 (52.35%), Postives = 192/298 (64.43%), Query Frame = 2
Query:    2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYS----------------HVPVMRNILDQLKSWNYNVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDDV 847
            DLI+L D MEELELGPNGGLVYCMEYLLDN+DWLKDELDN+D++EYIVFDCPGQVELYS                H+PVM+ +L+  + W Y VC V+ LDATF+ DPAKFISG LLSLSAMVQLELPH+NVLTKCDLAD  EVE+FLD ++AAL SMH           T    +R  GE                  GG     +GA  G A      Q    +       ++ + LP+L RLT AI+ ++D+++MV F+P+DI D++ +ALVL HAD+I QYGE LEPK P D+ 
Sbjct:   55 DLITLADVMEELELGPNGGLVYCMEYLLDNVDWLKDELDNYDDDEYIVFDCPGQVELYSYEXXXXXXXXXXXXXXHIPVMKRLLEHFRYWGYTVCGVYALDATFMGDPAKFISGTLLSLSAMVQLELPHINVLTKCDLADMEEVEKFLDLDSAALASMH--------ELATRSSRQRLGGEQ-----------------GG-----QGAVGGAAASDAARQEGSHIAAPASSSAQQRALPRLERLTAAIAGIIDEFSMVGFIPMDISDDQSVALVLQHADHITQYGEGLEPKDPDDEA 322          
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A7S2XYS1_9STRA (GPN-loop GTPase 3 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYS1_9STRA)

HSP 1 Score: 266 bits (680), Expect = 1.560e-85
Identity = 142/281 (50.53%), Postives = 181/281 (64.41%), Query Frame = 2
Query:    2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNYNVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDD 844
            DLIS++D MEEL  GPNG LVYCMEYLL+NMDWL+DELD + ++EYI+FDCPGQVELYSH+PVMR+++D+LK W+YNVC VFL+D+  + DP K +SG L+SLSAMVQLELPH+NVLTKCDL D+  ++ F + E +   ++H  QA  G                                                         G L R      RNQ   KLARLT+AI +V+DD+TMV+F+PLD+RDE+ I LVL HAD+++QYGEDLEPK+PKDD
Sbjct:   48 DLISVDDVMEELGYGPNGALVYCMEYLLENMDWLRDELDEYGDDEYIIFDCPGQVELYSHIPVMRDVVDRLKMWDYNVCGVFLVDSLVVGDPMKLLSGTLISLSAMVQLELPHVNVLTKCDLVDKEILDNFFE-EISVRQAVHNSQAVGG---------------------------------------------------------GTLLR------RNQ---KLARLTDAICSVVDDFTMVSFVPLDLRDEDSIGLVLAHADHVIQYGEDLEPKEPKDD 261          
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A024U8U1_9STRA (GPN-loop GTPase 3 n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024U8U1_9STRA)

HSP 1 Score: 236 bits (603), Expect = 4.690e-74
Identity = 121/283 (42.76%), Postives = 166/283 (58.66%), Query Frame = 2
Query:    2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNYNVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDDVS 850
            DLISLED MEEL  GPNGGLVYCMEYL+ N+DWL+D L  + +++Y +FDCPGQ+ELYSH+PVM+++   L+ W++++C V+L+D+ FI+DP+KFISG L SLSAMVQLELPH+NVLTKCDL D  E+E++LD  +  L+                               E +                                             N    K   L+ A+ NV++DY+MV F+P++I DEE I +VLHH D+ + YGED+EPK+PKDD++
Sbjct:   55 DLISLEDVMEELGYGPNGGLVYCMEYLIQNLDWLQDLLLEYSDDDYFIFDCPGQIELYSHLPVMKHLCTALQEWSFSICGVYLIDSLFISDPSKFISGILCSLSAMVQLELPHVNVLTKCDLVDEQELEKYLDPSSGYLL-------------------------------ETLT--------------------------------------------NATTNKWQPLSRAVCNVINDYSMVAFVPMNITDEESIEMVLHHIDHAINYGEDVEPKEPKDDMA 262          
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A6U0IL03_9STRA (GPN-loop GTPase 3 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IL03_9STRA)

HSP 1 Score: 239 bits (609), Expect = 5.250e-74
Identity = 129/276 (46.74%), Postives = 183/276 (66.30%), Query Frame = 2
Query:    2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNY--NVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLE 823
            DLIS++D MEEL LGPNGGL+YCMEYLL+N+DWL D L+ FD++EY++ DCPGQ+ELY+HVPVMR I+D +++  Y  ++ +VF++DATF+ D  KFISG+LLSLSAM+ LELPH+NVL+KCDL D+  V+  L+TE+A  +     +A++        F++   GE+ E  +   +  +  +      +A    +    KR   ++ R R               K  RLTEAIS++LDD++MV+F+PLDI DEE I LVL   D+++QYGED E
Sbjct:   61 DLISVDDVMEELGLGPNGGLIYCMEYLLENLDWLLDNLNQFDDDEYLIVDCPGQIELYTHVPVMRRIIDAMRTAGYASDMVSVFIVDATFVADAPKFISGSLLSLSAMIALELPHVNVLSKCDLVDKERVDEILETESAIQLWEIEDRARRREELAVEAFER---GESMEPYLAGSSASKGFEPGEKLVKANDTPSKESQKRSAAIEHRRR---------------KRDRLTEAISSLLDDFSMVSFMPLDITDEESIDLVLMTVDHVIQYGEDSE 318          
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: K0R8J1_THAOC (GPN-loop GTPase 3 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8J1_THAOC)

HSP 1 Score: 238 bits (606), Expect = 6.350e-74
Identity = 128/276 (46.38%), Postives = 179/276 (64.86%), Query Frame = 2
Query:    2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNY--NVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLE 823
            DLIS++D MEEL+LGPNGGLVYCMEYLL+NMDWL++ LDNFD++EY++ DCPGQ+ELY+H+PVM  I+DQLK W Y   + +VF++DATF+T+PAKFISG+LL+LSAM+ L+LPH+NVL+KCDL + + +ER L+ E+A  +   +     G     + F + R       K  A ++EE                                D++ R   R ++  K  RLT AI ++LDDY+MV F+PL+I DE+ I+ V+   D+ +QYGED E
Sbjct:   59 DLISVDDVMEELQLGPNGGLVYCMEYLLENMDWLQENLDNFDDDEYLILDCPGQIELYTHIPVMNKIIDQLKLWGYLDKMVSVFVVDATFVTEPAKFISGSLLALSAMISLQLPHVNVLSKCDLVEEASMERVLEMESALQL---WDVLGDGEGSALSMFHELRP------KKSARSEEE--------------------------------DKLVR--KRQERERKWNRLTVAICSLLDDYSMVGFIPLNINDEDSISHVMLTTDHAIQYGEDNE 291          
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A7S2RLE6_9STRA (GPN-loop GTPase 3 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RLE6_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.840e-73
Identity = 131/276 (47.46%), Postives = 180/276 (65.22%), Query Frame = 2
Query:    2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNYN--VCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLE 823
            DLIS++D MEEL LGPNGGL+YC+EYLL+NMDWL+DELD FD++EY++ DCPGQ+ELY+H+PVM+ I+DQL+ W Y+  V +VF++DATF+ D  KFISG+LLSLSAM+ LELPH+NV++KCDL D  +VER L TE+A  +   Y   +  +        K +D       +E   +  + +  G   + +K     +                   D+R QK  KL   T++I NVLDD++MV+F+PL+I+DEE I  VL H D  +QYGED E
Sbjct:   63 DLISVDDVMEELGLGPNGGLLYCIEYLLENMDWLQDELDAFDDDEYLLLDCPGQIELYTHIPVMKRIVDQLRLWGYDGTVASVFVVDATFLCDAPKFISGSLLSLSAMLSLELPHVNVMSKCDLVDNEQVERVLGTESATQL---YELEEYNL--------KHQD-------LEDFKRVTILEKSGNASKEDKAWRRQV-------------------DARRQKQNKL---TKSICNVLDDFSMVSFIPLNIKDEESIDNVLMHVDQTIQYGEDTE 298          
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A6U3ZEP1_9STRA (GPN-loop GTPase 3 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZEP1_9STRA)

HSP 1 Score: 236 bits (602), Expect = 2.790e-73
Identity = 129/283 (45.58%), Postives = 175/283 (61.84%), Query Frame = 2
Query:    2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNY--NVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDD 844
            DLIS++D MEEL LGPNG L+YCMEYLL+N+DWL+DELDNFD++EY++ DCPGQ+ELY+H+PVMR ++DQ++ W Y  ++ +VF++DATF+ D  KFISG+LLSLSAM+ +ELPH+NVL+KCDL +   V+R LD  +A  +             G     K+ DG+        I++EE                              +L  + R         K  RLTEAI  +LDDYTMV+FLPL+I DE+ I  VL   D+ VQYGED+E +  + D
Sbjct:   61 DLISVDDVMEELGLGPNGSLIYCMEYLLENLDWLQDELDNFDDDEYLILDCPGQIELYTHIPVMRRVIDQMRMWGYESSMMSVFVVDATFVCDAPKFISGSLLSLSAMIAMELPHVNVLSKCDLVEEERVDRILDVGSATELWNIEEYGSSVAIVGDEMAGKKDDGDE-------ISKEER-----------------------------QLIELRRK--------KRNRLTEAICTLLDDYTMVSFLPLNITDEDSIDHVLSVVDHTVQYGEDIECRGAEQD 299          
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A448YVL8_9STRA (GPN-loop GTPase 3 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVL8_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.980e-72
Identity = 131/280 (46.79%), Postives = 178/280 (63.57%), Query Frame = 2
Query:    2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNY--NVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKEL-QPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQ 832
            DLIS+E+ MEEL+LGPNGGLVYCMEYLL N+DWL+D LD+FD++EY++ DCPGQ+ELY+H+P+MRN++D+++ W Y   + AVFLLDATF+ D +KF+SG+LLSLSAM+ LELPH NVLTKCDL    EVE  LD  +A  +     Q +Q +   T PF                                    A  + +G E+ + + RL+R  R            RLT++IS +LDDY+M++F+PL+IRDEE I  +L   D  +QYGEDLE ++
Sbjct:   61 DLISVEEVMEELDLGPNGGLVYCMEYLLSNLDWLQDHLDSFDDDEYLILDCPGQLELYTHIPLMRNLIDRMRMWGYAHTMAAVFLLDATFVGDTSKFLSGSLLSLSAMIALELPHTNVLTKCDLLTDEEVEDILDHGSATQM-WDREQDRQSLIMPT-PFS---------------------------------VTAASSNQGDEVTEEQRRLERRRRHRQ---------RLTDSISQLLDDYSMISFIPLNIRDEESIDALLTCVDGSIQYGEDLEVRE 296          
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A7S2PBB3_9STRA (GPN-loop GTPase 3 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PBB3_9STRA)

HSP 1 Score: 232 bits (592), Expect = 4.860e-72
Identity = 124/277 (44.77%), Postives = 178/277 (64.26%), Query Frame = 2
Query:    2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNY--NVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAA-LISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLE 823
            +LIS++D MEEL+LGPNG LVYCMEYLL+NMDWL+D LD++D++EY++ DCPGQ+ELY+H+PVM  I+DQ++ W Y  ++ +VF++DATF+TDPAKFISG+LL+LSAM+ ++LPH+NVL+KCDL + + ++R L+ E+A  L  M    + +       P++         H V A      A +     +A+  A                           Q+  K +RLTE+I ++LDDY+MV F+PL+I DE+ I  VL   D+  QYGEDLE
Sbjct:   37 ELISVDDVMEELQLGPNGSLVYCMEYLLENMDWLQDHLDSYDDDEYLIIDCPGQIELYTHIPVMNKIIDQMRMWGYGESMVSVFVVDATFVTDPAKFISGSLLALSAMIAMQLPHVNVLSKCDLVEEASMDRVLEMESAIQLWDMLGDHSSESASL--QPYN---------HLVPATNNSTTAAATNNDNKAQISA--------------------------QQRARKWSRLTESICSLLDDYSMVGFVPLNINDEDSITHVLATVDHATQYGEDLE 276          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2Q3_9PHAE2.380e-14877.40GPN-loop GTPase 3 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835YPS9_9STRA2.310e-9452.35GPN-loop GTPase 3 n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2XYS1_9STRA1.560e-8550.53GPN-loop GTPase 3 n=1 Tax=Fibrocapsa japonica TaxI... [more]
A0A024U8U1_9STRA4.690e-7442.76GPN-loop GTPase 3 n=7 Tax=Aphanomyces TaxID=100860... [more]
A0A6U0IL03_9STRA5.250e-7446.74GPN-loop GTPase 3 n=1 Tax=Minutocellus polymorphus... [more]
K0R8J1_THAOC6.350e-7446.38GPN-loop GTPase 3 n=1 Tax=Thalassiosira oceanica T... [more]
A0A7S2RLE6_9STRA1.840e-7347.46GPN-loop GTPase 3 n=1 Tax=Eucampia antarctica TaxI... [more]
A0A6U3ZEP1_9STRA2.790e-7345.58GPN-loop GTPase 3 n=2 Tax=Ditylum brightwellii Tax... [more]
A0A448YVL8_9STRA1.980e-7246.79GPN-loop GTPase 3 n=1 Tax=Pseudo-nitzschia multist... [more]
A0A7S2PBB3_9STRA4.860e-7244.77GPN-loop GTPase 3 n=1 Tax=Skeletonema marinoi TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13962contigH-elongata_contig13962:4851..7965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score390.2
Seed ortholog evalue8.2e-106
Seed eggNOG ortholog2880.D7FQU7
Preferred nameGPN3
KEGG koko:K06883,ko:K12486
KEGG Pathwayko04144,map04144
GOsGO:0000003,GO:0000070,GO:0000122,GO:0000212,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000779,GO:0000780,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000819,GO:0002064,GO:0003006,GO:0003674,GO:0003682,GO:0003824,GO:0003924,GO:0004497,GO:0005048,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006355,GO:0006357,GO:0006606,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0007062,GO:0007063,GO:0007064,GO:0007088,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009653,GO:0009791,GO:0009886,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010571,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0015031,GO:0015616,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016491,GO:0016604,GO:0016605,GO:0016705,GO:0016709,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019219,GO:0019222,GO:0019748,GO:0019904,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030330,GO:0030855,GO:0030900,GO:0031056,GO:0031060,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031497,GO:0031618,GO:0031933,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033218,GO:0033262,GO:0033365,GO:0033554,GO:0034091,GO:0034092,GO:0034182,GO:0034183,GO:0034502,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034724,GO:0034728,GO:0035064,GO:0035107,GO:0035108,GO:0035120,GO:0035127,GO:0035128,GO:0035136,GO:0035264,GO:0035295,GO:0035556,GO:0035690,GO:0040007,GO:0042221,GO:0042277,GO:0042393,GO:0042493,GO:0042623,GO:0042770,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044550,GO:0044703,GO:0045005,GO:0045137,GO:0045184,GO:0045740,GO:0045786,GO:0045787,GO:0045839,GO:0045875,GO:0045892,GO:0045893,GO:0045930,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046546,GO:0046661,GO:0046907,GO:0048232,GO:0048285,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048608,GO:0048609,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051321,GO:0051570,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055114,GO:0060008,GO:0060009,GO:0060173,GO:0060255,GO:0060322,GO:0060429,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070087,GO:0070192,GO:0070198,GO:0070727,GO:0070887,GO:0071103,GO:0071241,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0072331,GO:0072520,GO:0072594,GO:0072710,GO:0072711,GO:0080090,GO:0090068,GO:0090304,GO:0090329,GO:0097327,GO:0097329,GO:0098687,GO:0098813,GO:0140014,GO:0140030,GO:0140034,GO:0140097,GO:1900112,GO:1901360,GO:1901576,GO:1901580,GO:1901581,GO:1901582,GO:1901698,GO:1901699,GO:1902275,GO:1902679,GO:1902680,GO:1903046,GO:1903047,GO:1903506,GO:1903507,GO:1903508,GO:1904907,GO:1904908,GO:1990421,GO:1990707,GO:2000105,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.GTP binding
EggNOG OGsKOG1534@1,KOG1534@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGPN-loop GTPase
Ec32 orthologEc-16_000820.1
Exons6
Model size868
Cds size843
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.085387-CDS-H-elongata_contig13962:4850..49911622929830.085387-CDS-H-elongata_contig13962:4850..4991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 4851..4991 -
1691679174.9655771-CDS-H-elongata_contig13962:4850..49911691679174.9655771-CDS-H-elongata_contig13962:4850..4991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 4851..4991 -
1622929830.099331-CDS-H-elongata_contig13962:5792..59111622929830.099331-CDS-H-elongata_contig13962:5792..5911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 5793..5911 -
1691679174.9755352-CDS-H-elongata_contig13962:5792..59111691679174.9755352-CDS-H-elongata_contig13962:5792..5911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 5793..5911 -
1622929830.1149724-CDS-H-elongata_contig13962:6261..64871622929830.1149724-CDS-H-elongata_contig13962:6261..6487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 6262..6487 -
1691679174.9830256-CDS-H-elongata_contig13962:6261..64871691679174.9830256-CDS-H-elongata_contig13962:6261..6487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 6262..6487 -
1622929830.1249-CDS-H-elongata_contig13962:6910..70751622929830.1249-CDS-H-elongata_contig13962:6910..7075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 6911..7075 -
1691679174.991003-CDS-H-elongata_contig13962:6910..70751691679174.991003-CDS-H-elongata_contig13962:6910..7075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 6911..7075 -
1622929830.1348011-CDS-H-elongata_contig13962:7325..73791622929830.1348011-CDS-H-elongata_contig13962:7325..7379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 7326..7379 -
1691679174.9992123-CDS-H-elongata_contig13962:7325..73791691679174.9992123-CDS-H-elongata_contig13962:7325..7379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 7326..7379 -
1622929830.1465533-CDS-H-elongata_contig13962:7802..79401622929830.1465533-CDS-H-elongata_contig13962:7802..7940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 7803..7940 -
1691679175.0082839-CDS-H-elongata_contig13962:7802..79401691679175.0082839-CDS-H-elongata_contig13962:7802..7940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 7803..7940 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.1573732-UTR-H-elongata_contig13962:7940..79651622929830.1573732-UTR-H-elongata_contig13962:7940..7965Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13962 7941..7965 -
1691679175.0183303-UTR-H-elongata_contig13962:7940..79651691679175.0183303-UTR-H-elongata_contig13962:7940..7965Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13962 7941..7965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13962.2759.1prot_H-elongata_contig13962.2759.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13962 4851..7940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13962.2759.1

>prot_H-elongata_contig13962.2759.1 ID=prot_H-elongata_contig13962.2759.1|Name=mRNA_H-elongata_contig13962.2759.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp
MEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELY
SHVPVMRNILDQLKSWNYNVCAVFLLDATFITDPAKFISGALLSLSAMVQ
LELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPF
DKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRG
RLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIAL
VLHHADYIVQYGEDLEPKQPKDDVSASRRK*
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mRNA from alignment at H-elongata_contig13962:4851..7965-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13962.2759.1 ID=mRNA_H-elongata_contig13962.2759.1|Name=mRNA_H-elongata_contig13962.2759.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3115bp|location=Sequence derived from alignment at H-elongata_contig13962:4851..7965- (Himanthalia elongata Himel1 dioecious)
AGATCTGATATCTCTGGAAGACGCCATGGAGGAGCTGGAGCTCGGACCCA ACGGTGGCCTGGTATACTGCATGGAGTATCTCCTGGACAACATGGACTGG CTGAAGGACGAGTTGGATAATTTTGACGAGGAAGAGTACATCGTCTTCGA TTGTCCAGGCCAGGTGCTCCGGGTGTTTCTAAATATTTTGCATAATTTTT AGGACCGCTCACAGGGCTAGTTCACTTACGGCTCGAGATAAATAGTTTAC TCGAAGGTATCCAGTTTATGTATAGTCTCTACAGGTTTACCGCCATGATC TGGTTAGAAACACACGTCGGGAAAGTTCGGAGAATCTCAATAATAGCTAT GATCGCTAACGCAATCCAAAAGGGAGTAGTGTCCCTTGATTCTTTATAAC TCAACGTTGCAGTCAATTCCTTATCGAGAATACTCTCCAGATTGCCTGTC ATTTTCCTTCACGTCCCAAATATTCTCGCTTTGCACATACCATAATGTGT CGCCGTCGCCATCTCGTTTGAACTCGAGCTGGGGCGGCAATCCGTTTTGA GTCTCTGTCTGTCTGCCGCATGGAATAAACGTACAGGTTGAACTCTACAG CCACGTCCCGGTCATGCGGAATATTCTCGATCAGCTCAAGGTGCATACGC CTACCCGCAAGCCCTCCCCGTCCTGTCGATAGATTTCTCGATCACTCCAC TGTAAAACCATTCATACGATAGCCACACGTTGATGCTCGCTCAACTTATT TATATCTCAGTGCATCTGTTTTTACATGTATCGCCAATGGATAACAAAAA ATCAGCCTGATCCGCCCACTCCCTCCCCCGTCTCCTTCGCGTCCTGTTTG TCGACCGGACCTGGCTTGGTGCTCCTACATGCGATCGTAGTCGTGGAACT ACAACGTCTGTGCGGTGTTTCTGCTGGATGCGACATTCATCACAGACCCC GCAAAGTTTATAAGCGGGGCACTCCTGAGCCTCAGCGCGATGGTGCAGCT GGAGCTGCCGCATCTGAACGTGCTGACCAAGTGCGATCTCGCCGACCGAA GCGAGGTGATCTCACTGTTTTTATAGGGAGGGGAAGGGAACGCGACTCGT ATGATGTCCTGTGGATTGATGGAGTGAACTATTTGGTGAAAATCAAGTAC TGATTTGTCTTCTGACCCATGCGTGGTTTGGTGTAAATTGATGGCGGCGT AACATGCCGTAGTACACCGTGTTCGCGAGGATAGAAGGAGCCGTGAAGAC AAGATGTGCTCTCGGCGAGCGCGGAGGACTCGCCTCGTGGCCTCAGCTGG CGCCCGCCTGTCGAAACAGCCGCGATCCAAGTGATCGCGTTTGACCAGTG TGATTGAATACCCGACGGGTCGTGTGACAGCGAAAGACGGGATGAATTAT ACTCGCGCCATCACCGCCTCATGCCCGCCTTTGCTGCGCCTCTTGCCACA CCCCGTCACCCCAACCACACCTCACAAGGTTGAGCGCTTTTTGGACACCG AGAATGCGGCGTTGATCTCCATGCACTATCCGCAAGCTCAGCAAGGAGTT CATTTCGGCACGGCCCCATTCGACAAGCGGCGCGACGGGGAAACGCCCGA GCACAAGGTAGAGGCAATCGCGCAAGAAGAACTTGCGGATTCCGACGGTG GTACTCCCGAGGCGGAAAAGGGAGCAGCGGCAGGGCTGGCGAAGAGAGGT AAGGGTGGGGGAGAAAAACCAAATAAACTAAAACAAAGGATGTGCCCCGT AGAGAAAACATTTCGGTGTGGAGTGCAGCGTGCCTCCCTCGCACGAGGCT CTAGTGCTCCGGATGTCTCGTCCATTGAGTAATGGTCTTGTGCGAGGGAT TGTAACGCCGCTGGCTTGAGTTGATTTGATACCCGAGAACACTTTCTGGG CCACGCCTCGAAAGCACGCACGTCATATGTTTGAAGAGGCGCGGCTTGTG GTTGTCGCCCTTGCGTGGAGCATCCCAAGACTGTGGCATGTGACCACCGG GCGAGCGCATATGTTGCTATCTCTCTTTCTATGTATTTATATTATATATT TCAGAGCTGCAGCCCCGAGGCCGCTTGGATCGGATAGGAAGGCCCGACTC GCGAAATCAGAAACTGCCGAAGCTTGCGCGACTCACGGAGGCGATATCGA ACGTGCTCGATGACTACACGATGGTGAGGTCGACCAGGTTGCATGACGTG TTTTTTCTTTACCAGGGTGTGACTTTGGGTCACCGGGACACGAGTGAATC GCTGCCGTCATGCGACAGCGTATTTTCAAATATGTTATAGCTACTTAAAG CCAGTGTACCAAATCGGTCGGTAGAGCTATCGTTGTCGCTTATCAAGATC GAGCTGGACACCAATGTAATAGCCGCCCCAAGGTTGTTGTCATTCATCCC TATACTGCTATCAATATAAATATTTTTTTTCAGAAGCTCTGTAAGGTCGG AAATACCATGCCTTTTTTTTCTGGTTGTTTTTCTCGAACTAAAACTCGAG CATGTAGAGCTACGTTTATGTTATGACCACGCCGAAGCTGTTCATTATTT ATAAGTTTTTACGATAGATAAACGTCGCGTCCGACGCGCTAGTCCTCCCG TGGTCCCTTTCAACCATCGAGTTTCCGGCGGACACAATAGTTCAAACCCT TTCCGCCCGTTAAGACTGGTGGATGAAGCTACCCCCCTCCCCCTATGGGC CGCATACGAAACGCTTTGCGGTCCCTGGCATCTTGTCATATACCGGGTGG TATCTCATCCCACTACCTGTTTGGGTGGGAAATAGACCTTGGCTCCAAAT CCACTAAATACACGATTTTGGTTCAGCAACGACGACGTAAAGCTTTTTGG GGCCCAAGCATTTTTTAATGAAAATAAAAACACATGGAGTAGAGGCCTAC TACCTCGGTGTTTGATGGTCCTGAACGCGTCGCCTCGTACTGCTGATCTC CTACCTCCCTCCATCCCTCCGAAGGTGAACTTTCTGCCACTGGACATTCG AGACGAGGAAGACATCGCTCTAGTCCTTCACCACGCCGACTACATCGTGC AGTACGGAGAGGACCTAGAGCCCAAGCAACCGAAAGATGACGTGAGTGCT TCGCGTAGAAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig13962:4851..7965-

>mRNA_H-elongata_contig13962.2759.1 ID=mRNA_H-elongata_contig13962.2759.1|Name=mRNA_H-elongata_contig13962.2759.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1686bp|location=Sequence derived from alignment at H-elongata_contig13962:4851..7965- (Himanthalia elongata Himel1 dioecious)
ATGGAGGAGCTGGAGCTCGGACCCAACGGTGGCCTGGTATACTGCATGGA
GTATCTCCTGGACAACATGGACTGGCTGAAGGACGAGTTGGATAATTTTG
ACGAGGAAGAGTACATCGTCTTCGATTGTCCAGGCCAGATGGAGGAGCTG
GAGCTCGGACCCAACGGTGGCCTGGTATACTGCATGGAGTATCTCCTGGA
CAACATGGACTGGCTGAAGGACGAGTTGGATAATTTTGACGAGGAAGAGT
ACATCGTCTTCGATTGTCCAGGCCAGGTTGAACTCTACAGCCACGTCCCG
GTCATGCGGAATATTCTCGATCAGCTCAAGGTTGAACTCTACAGCCACGT
CCCGGTCATGCGGAATATTCTCGATCAGCTCAAGTCGTGGAACTACAACG
TCTGTGCGGTGTTTCTGCTGGATGCGACATTCATCACAGACCCCGCAAAG
TTTATAAGCGGGGCACTCCTGAGCCTCAGCGCGATGGTGCAGCTGGAGCT
GCCGCATCTGAACGTGCTGACCAAGTGCGATCTCGCCGACCGAAGCGAGT
CGTGGAACTACAACGTCTGTGCGGTGTTTCTGCTGGATGCGACATTCATC
ACAGACCCCGCAAAGTTTATAAGCGGGGCACTCCTGAGCCTCAGCGCGAT
GGTGCAGCTGGAGCTGCCGCATCTGAACGTGCTGACCAAGTGCGATCTCG
CCGACCGAAGCGAGGTTGAGCGCTTTTTGGACACCGAGAATGCGGCGTTG
ATCTCCATGCACTATCCGCAAGCTCAGCAAGGAGTTCATTTCGGCACGGC
CCCATTCGACAAGCGGCGCGACGGGGAAACGCCCGAGCACAAGGTAGAGG
CAATCGCGCAAGAAGAACTTGCGGATTCCGACGGTGGTACTCCCGAGGCG
GAAAAGGGAGCAGCGGCAGGGCTGGCGAAGAGAGGTAAGGGTTGAGCGCT
TTTTGGACACCGAGAATGCGGCGTTGATCTCCATGCACTATCCGCAAGCT
CAGCAAGGAGTTCATTTCGGCACGGCCCCATTCGACAAGCGGCGCGACGG
GGAAACGCCCGAGCACAAGGTAGAGGCAATCGCGCAAGAAGAACTTGCGG
ATTCCGACGGTGGTACTCCCGAGGCGGAAAAGGGAGCAGCGGCAGGGCTG
GCGAAGAGAGGTAAGGAGCTGCAGCCCCGAGGCCGCTTGGATCGGATAGG
AAGGCCCGACTCGCGAAATCAGAAACTGCCGAAGCTTGCGCGACTCACGG
AGGCGATATCGAACGTGCTCGATGACTACACGATGAGCTGCAGCCCCGAG
GCCGCTTGGATCGGATAGGAAGGCCCGACTCGCGAAATCAGAAACTGCCG
AAGCTTGCGCGACTCACGGAGGCGATATCGAACGTGCTCGATGACTACAC
GATGGTGAACTTTCTGCCACTGGACATTCGAGACGAGGAAGACATCGCTC
TAGTCCTTCACCACGCCGACTACATCGTGCAGTACGGAGAGGACCTAGAG
CCCAAGCAACCGAAAGATGACGTGAGTGCTTCGCGTAGAAAATAAGTGAA
CTTTCTGCCACTGGACATTCGAGACGAGGAAGACATCGCTCTAGTCCTTC
ACCACGCCGACTACATCGTGCAGTACGGAGAGGACCTAGAGCCCAAGCAA
CCGAAAGATGACGTGAGTGCTTCGCGTAGAAAATAA
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