mRNA_H-elongata_contig13962.2758.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13962.2758.1
Unique NamemRNA_H-elongata_contig13962.2758.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13962.2758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13962contigH-elongata_contig13962:3..1413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size448
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13962.2758.1prot_H-elongata_contig13962.2758.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13962 3..1272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.0125499-CDS-H-elongata_contig13962:2..1551622929830.0125499-CDS-H-elongata_contig13962:2..155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 3..155 +
1691679174.922459-CDS-H-elongata_contig13962:2..1551691679174.922459-CDS-H-elongata_contig13962:2..155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 3..155 +
1622929830.0259821-CDS-H-elongata_contig13962:435..4561622929830.0259821-CDS-H-elongata_contig13962:435..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 436..456 +
1691679174.9338303-CDS-H-elongata_contig13962:435..4561691679174.9338303-CDS-H-elongata_contig13962:435..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 436..456 +
1622929830.0383034-CDS-H-elongata_contig13962:1140..12721622929830.0383034-CDS-H-elongata_contig13962:1140..1272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 1141..1272 +
1691679174.9469643-CDS-H-elongata_contig13962:1140..12721691679174.9469643-CDS-H-elongata_contig13962:1140..1272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13962 1141..1272 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.0492299-UTR-H-elongata_contig13962:1272..14131622929830.0492299-UTR-H-elongata_contig13962:1272..1413Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13962 1273..1413 +
1691679174.9553444-UTR-H-elongata_contig13962:1272..14131691679174.9553444-UTR-H-elongata_contig13962:1272..1413Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13962 1273..1413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13962.2758.1

>prot_H-elongata_contig13962.2758.1 ID=prot_H-elongata_contig13962.2758.1|Name=mRNA_H-elongata_contig13962.2758.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
GRNERTPGVRPDSSWGWENERADREGTAEPASRDETLRRERGQGKFISPV
EVDVPDFLILVNPVVAARSLERGIRHALSTRWWKKRRRHQERARRRSRDF
G*
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mRNA from alignment at H-elongata_contig13962:3..1413+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13962.2758.1 ID=mRNA_H-elongata_contig13962.2758.1|Name=mRNA_H-elongata_contig13962.2758.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1411bp|location=Sequence derived from alignment at H-elongata_contig13962:3..1413+ (Himanthalia elongata Himel1 dioecious)
GGGAGGAACGAGAGGACTCCGGGAGTAAGACCAGATTCATCCTGGGGCTG
GGAGAATGAGCGGGCTGACCGAGAGGGGACGGCCGAACCCGCCTCACGAG
ACGAAACTCTCAGGCGTGAACGGGGACAGGGGAAATTCATTTCCCCTGTT
GAGGTGACCACGAACAGGATTGGCAGCAATATCCGGTTGATCGATTCTAT
ACTATTAATAGACTAGTAATAGACTAGACTATGCTATATGTAATGTGTGA
TGGCCACACTCTATTAGCACTAATAACACACTCTACAGGGTTTGAAATAA
ATCCAGAGCATTTATGGTTTTAGCAAATATATAACGGCAGCGCTCCAATT
CCAACATCTCACAAAGGCTGCCGCACGTCGTCTATGCAGCTGATCGTAGC
ACCTGCCGCCCCACGTCCGCATCGTGACCGAAGGTGGATGTGCCCGACTT
CTTATCCATTCTGGACCTCGTCAAGCCACAAAAAAGCGAAATCTTCCTAG
ACTTCAGCTCAGGAACTGCCCAAGCCGTGATGACCACCGCCTGCGGCTTC
CCCGAGTTTTCCAAGGTGCATCCTTCTTCGTGGCGCAATTTTCCCCGCTA
CGTCGACCATCGTCACACGGAGACCTGATTTTGTCGTCGCTTATCGATTG
TACCGCGGTAAATCGCGTGTCTAGTCTGAGTACATTTATTCCAACGGAGA
CGTGACTACCGCGAATGATGAAACAGAGCCCACAAAAGGCACACCGAAAC
CCTCTGTCGAGCCTTGCCCTTTCGGGCCCGAGTGGGGCGTTCGAGCTGAG
GAGGCATGTTATATTGCAAGGGGTGCGAGGGAAGCCTTGACGTTAAGTTT
TTGCTGGGTTGCCTTTTTTTCCAGTACGCATCATGACTGAGAGAGGCTTA
CCGTTAAATTTAGTAATTATATTTAATCCCTGGAAGCTGGATGTAGCCGT
CACGCATGTTGATAGGAAATCGAATAACTGAAGCATATCCTCCCCCCCCC
ACAAATACTCGTAACCGTCTCCAAAACACGGCTTTGGCACTATGCTCAAT
TTTTCGAACACCATACAAGTGCCTAGGAATCGATATCGTCCCGAGCCTCG
CGGCAGCGGCGGGCGATCACTTGTGGATGCCGAAGGATATTCTGGTTAAC
CCAGTGGTCGCCGCGAGAAGCCTCGAGAGGGGAATTCGTCATGCTCTCAG
TACGCGGTGGTGGAAGAAGAGAAGGCGACATCAAGAACGGGCTCGGCGTC
GCAGTCGAGATTTCGGCTGATGCGGGGCTGAGCACGCCAGGACTTGAGCT
ATTCATTGAGGGCTTGCTGCGCAGGGCGTTCTCTCCATCGCGATCAATGC
AGTGTCTGGGGCACAAACAAAACGCGGAATGCGCGGCTGAATATAGCCCG
CGAGTGGTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig13962:3..1413+

>mRNA_H-elongata_contig13962.2758.1 ID=mRNA_H-elongata_contig13962.2758.1|Name=mRNA_H-elongata_contig13962.2758.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig13962:3..1413+ (Himanthalia elongata Himel1 dioecious)
GGGAGGAACGAGAGGACTCCGGGAGTAAGACCAGATTCATCCTGGGGCTG
GGAGAATGAGCGGGCTGACCGAGAGGGGACGGCCGAACCCGCCTCACGAG
ACGAAACTCTCAGGCGTGAACGGGGACAGGGGAAATTCATTTCCCCTGTT
GAGGGGAGGAACGAGAGGACTCCGGGAGTAAGACCAGATTCATCCTGGGG
CTGGGAGAATGAGCGGGCTGACCGAGAGGGGACGGCCGAACCCGCCTCAC
GAGACGAAACTCTCAGGCGTGAACGGGGACAGGGGAAATTCATTTCCCCT
GTTGAGGTGGATGTGCCCGACTTCTTAGTGGATGTGCCCGACTTCTTAAT
TCTGGTTAACCCAGTGGTCGCCGCGAGAAGCCTCGAGAGGGGAATTCGTC
ATGCTCTCAGTACGCGGTGGTGGAAGAAGAGAAGGCGACATCAAGAACGG
GCTCGGCGTCGCAGTCGAGATTTCGGCTGAATTCTGGTTAACCCAGTGGT
CGCCGCGAGAAGCCTCGAGAGGGGAATTCGTCATGCTCTCAGTACGCGGT
GGTGGAAGAAGAGAAGGCGACATCAAGAACGGGCTCGGCGTCGCAGTCGA
GATTTCGGCTGA
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