mRNA_H-elongata_contig139619.2757.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139619.2757.1
Unique NamemRNA_H-elongata_contig139619.2757.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139619.2757.1 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 8.750e-37
Identity = 74/97 (76.29%), Postives = 81/97 (83.51%), Query Frame = 1
Query:    1 GVSERLAILIEGESLLNDAAAIVIFIVFRDAFVGYEDSSFIGVLETAARMSLGGPVVGLVLGMLGSFTLGYVFDDEMTEITLTVIVCFSAFMISEAT 291
            GVSERL +LIEGESLLNDA  IV+FIVFRDAFVG  DSS   VL TA RMS GGP+VGL LGM GSF LGY+ DD MTEIT+TVIVCFS+F+ISEAT
Sbjct:   96 GVSERLNVLIEGESLLNDATGIVVFIVFRDAFVGVADSSPAQVLVTAVRMSFGGPMVGLALGMFGSFLLGYIIDDAMTEITVTVIVCFSSFIISEAT 192          
BLAST of mRNA_H-elongata_contig139619.2757.1 vs. uniprot
Match: A0A836CH43_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH43_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.370e-27
Identity = 53/96 (55.21%), Postives = 78/96 (81.25%), Query Frame = 1
Query:    4 VSERLAILIEGESLLNDAAAIVIFIVFRDAFVGYEDSSFIGVLETAARMSLGGPVVGLVLGMLGSFTLGYVFDDEMTEITLTVIVCFSAFMISEAT 291
            VS+RLA  IEGESLLND  A+VIF++F+DA +G +DS    +  TAAR++LGGP++GL +G++GSF LG + DD  +EIT+T+++C+SAF+++EAT
Sbjct:   97 VSQRLAARIEGESLLNDGVAVVIFVIFKDALLGGKDSQASHIAATAARLALGGPLLGLAVGIVGSFVLGRILDDAFSEITITIVLCYSAFLLAEAT 192          
BLAST of mRNA_H-elongata_contig139619.2757.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.180e-26
Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = 1
Query:    1 GVSERLAILIEGESLLNDAAAIVIFIVFRDAFVGYEDSSFIGVLETAARMSLGGPVVGLVLGMLGSFTLGYVFDDEMTEITLTVIVCFSAFMISEAT 291
            GVSERLA+LIEGESLLND  +IV+F VF DA  G   +S   V+    R+ LGGP VG   GM+GSF +GY+ +D ++EIT TV+VCFSAF+++EAT
Sbjct:  200 GVSERLAVLIEGESLLNDGTSIVVFSVFFDASTGIGSTSVGHVVAQFVRLGLGGPAVGFFTGMIGSFAIGYILEDHLSEITCTVVVCFSAFLLAEAT 296          
BLAST of mRNA_H-elongata_contig139619.2757.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.210e-26
Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = 1
Query:    1 GVSERLAILIEGESLLNDAAAIVIFIVFRDAFVGYEDSSFIGVLETAARMSLGGPVVGLVLGMLGSFTLGYVFDDEMTEITLTVIVCFSAFMISEAT 291
            GVSERLA+LIEGESLLND  +IV+F VF DA  G   +S   V+    R+ LGGP VG   GM+GSF +GY+ +D ++EIT TV+VCFSAF+++EAT
Sbjct:  133 GVSERLAVLIEGESLLNDGTSIVVFSVFFDASTGIGSTSVGHVVTQFVRLGLGGPAVGFFTGMIGSFAIGYILEDHLSEITCTVVVCFSAFLLAEAT 229          
BLAST of mRNA_H-elongata_contig139619.2757.1 vs. uniprot
Match: A0A6H5LPB6_9PHAE (Na_H_Exchanger domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LPB6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.640e-22
Identity = 51/97 (52.58%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    1 GVSERLAILIEGESLLNDAAAIVIFIVFRDAFVGYEDSSFIGVLETAARMSLGGPVVGLVLGMLGSFTLGYVFDDEMTEITLTVIVCFSAFMISEAT 291
            GVSE+L  LIEGESLLND +AIV+F VF +A  G+   ++  V+E  AR++LGGP +G V+G++G+F LGYV +D + E++LTV++ FS F + EAT
Sbjct:  184 GVSEKLGTLIEGESLLNDGSAIVVFEVFLEAVEGHS-RNWHEVIEFGARLALGGPAIGAVIGIMGAFVLGYVINDALVEVSLTVLLAFSTFALCEAT 279          
BLAST of mRNA_H-elongata_contig139619.2757.1 vs. uniprot
Match: A0A7S1UK40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK40_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.830e-17
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    1 GVSERLAILIEGESLLNDAAAIVIFIVFRDAFVGYEDSSFIGVLETAARMSLGGPVVGLVLGMLGSFTLGYVFDDEMTEITLTVIVCFSAFMISEAT 291
            GVSERLA L+EGESL ND  +IV+F VFRDA  G  + +   ++    R++LGG V G+ +G      + Y+  D M+EIT+T+I  F AF+++EAT
Sbjct:  178 GVSERLATLMEGESLFNDGTSIVLFEVFRDALTGAANRNAGELIAFFLRLALGGAVAGIAVGAACVIAISYILHDGMSEITITIIGAFGAFLVAEAT 274          
BLAST of mRNA_H-elongata_contig139619.2757.1 vs. uniprot
Match: F0Y140_AURAN (Na_H_Exchanger domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y140_AURAN)

HSP 1 Score: 83.6 bits (205), Expect = 1.160e-16
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 GVSERLAILIEGESLLNDAAAIVIFIVFRDAF----VGYEDSSFIGVLETAARMSLGGPVVGLVLGMLGSFTLGYVFDDEMTEITLTVIVCFSAFMISE 285
            GVSERL  LIEGESLLND  AIV+F VF+ A        E  S+  VL    R+   GPVVG  +G   +  LGYV +D + EIT+T+I C++AF ++E
Sbjct:  147 GVSERLGTLIEGESLLNDGTAIVVFDVFKHALEHKPCDAEMPSWQSVLRMLFRLGALGPVVGTAIGWCAATLLGYVLNDPLNEITITLITCYAAFAVAE 245          
BLAST of mRNA_H-elongata_contig139619.2757.1 vs. uniprot
Match: W7T4P8_9STRA (Salt overly sensitive 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4P8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.580e-16
Identity = 43/98 (43.88%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 GVSERLAILIEGESLLNDAAAIVIFIVFRDAFVGYEDSSFIGVLETAARMSLGGPVVGLVLGMLGSFTLGYVFDDEMTEITLTVIVCFSAFMISEATE 294
            GV E L+ILI+GESLLND  AIV++ +F    V  E  S +  +E+A  + LGGP +GLV+G L S+ LG + +D  +EIT+T++  + A++++E  E
Sbjct:  169 GVVESLSILIDGESLLNDGFAIVLYTIFSRLVVHEETLSVLETVESAVILCLGGPAIGLVVGALTSYILGVLLNDPASEITMTILCGYGAYLLAELAE 266          
BLAST of mRNA_H-elongata_contig139619.2757.1 vs. uniprot
Match: A0A4D9CZX9_9STRA (Na_H_Exchanger domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZX9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.640e-16
Identity = 43/98 (43.88%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 GVSERLAILIEGESLLNDAAAIVIFIVFRDAFVGYEDSSFIGVLETAARMSLGGPVVGLVLGMLGSFTLGYVFDDEMTEITLTVIVCFSAFMISEATE 294
            GV E L+ILI+GESLLND  AIV++ +F    V  E  S +  +E+A  + LGGP +GLV+G L S+ LG + +D  +EIT+T++  + A++++E  E
Sbjct:  169 GVVESLSILIDGESLLNDGFAIVLYTIFSRLVVHEETLSVLETVESAVILCLGGPAIGLVVGALTSYILGVLLNDPASEITMTILCGYGAYLLAELAE 266          
BLAST of mRNA_H-elongata_contig139619.2757.1 vs. uniprot
Match: A0A5A8DG13_CAFRO (Cyclic nucleotide-binding domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DG13_CAFRO)

HSP 1 Score: 82.4 bits (202), Expect = 3.040e-16
Identity = 43/97 (44.33%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 GVSERLAILIEGESLLNDAAAIVIFIVFRDAFVGYEDSSFIGVLETAARMSLGGPVVGLVLGMLGSFTLGYVFDDEMTEITLTVIVCFSAFMISEAT 291
            G S++L  LIEGESLLND  AIV F  FR   +G E+ +   ++    ++SLGGP++G +   +    L Y+++D ++EIT+TV+ C+S FMI+EAT
Sbjct:  176 GASKQLETLIEGESLLNDGTAIVAFTAFRGMVLG-EEKTIEELVGFGLQLSLGGPLLGAIFAAISIVALSYLYNDAVSEITVTVVGCYSVFMIAEAT 271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139619.2757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKR2_ECTSI8.750e-3776.29Sodium/hydrogen exchanger family protein n=1 Tax=E... [more]
A0A836CH43_9STRA1.370e-2755.21Sodium/hydrogen exchanger family-domain-containing... [more]
A0A6H5L0H9_9PHAE1.180e-2657.73Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
D7G372_ECTSI1.210e-2657.73Sodium/hydrogen exchanger family n=1 Tax=Ectocarpu... [more]
A0A6H5LPB6_9PHAE1.640e-2252.58Na_H_Exchanger domain-containing protein n=2 Tax=E... [more]
A0A7S1UK40_9STRA1.830e-1746.39Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0Y140_AURAN1.160e-1648.48Na_H_Exchanger domain-containing protein (Fragment... [more]
W7T4P8_9STRA1.580e-1643.88Salt overly sensitive 1 n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CZX9_9STRA1.640e-1643.88Na_H_Exchanger domain-containing protein n=1 Tax=N... [more]
A0A5A8DG13_CAFRO3.040e-1644.33Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139619contigH-elongata_contig139619:396..1245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue3.3e-30
Seed eggNOG ortholog2880.D8LKR2
EggNOG free text desc.potassium:proton antiporter activity
EggNOG OGsCOG0025@1,KOG1965@2759
Ec32 ortholog descriptionSodium/hydrogen exchanger family protein
Ec32 orthologEc-07_004480.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929829.9642382-CDS-H-elongata_contig139619:395..5551622929829.9642382-CDS-H-elongata_contig139619:395..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139619 396..555 +
1691679174.9000797-CDS-H-elongata_contig139619:395..5551691679174.9000797-CDS-H-elongata_contig139619:395..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139619 396..555 +
1622929829.977418-CDS-H-elongata_contig139619:1111..12451622929829.977418-CDS-H-elongata_contig139619:1111..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139619 1112..1245 +
1691679174.9111042-CDS-H-elongata_contig139619:1111..12451691679174.9111042-CDS-H-elongata_contig139619:1111..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139619 1112..1245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139619.2757.1prot_H-elongata_contig139619.2757.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139619 396..1245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139619.2757.1

>prot_H-elongata_contig139619.2757.1 ID=prot_H-elongata_contig139619.2757.1|Name=mRNA_H-elongata_contig139619.2757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
GVSERLAILIEGESLLNDAAAIVIFIVFRDAFVGYEDSSFIGVLETAARM
SLGGPVVGLVLGMLGSFTLGYVFDDEMTEITLTVIVCFSAFMISEATE
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mRNA from alignment at H-elongata_contig139619:396..1245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139619.2757.1 ID=mRNA_H-elongata_contig139619.2757.1|Name=mRNA_H-elongata_contig139619.2757.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=850bp|location=Sequence derived from alignment at H-elongata_contig139619:396..1245+ (Himanthalia elongata Himel1 dioecious)
GGGGTCTCGGAGCGTCTGGCGATTTTGATCGAGGGCGAGTCGCTGCTCAA CGACGCGGCGGCCATCGTGATCTTCATCGTCTTCCGCGATGCATTCGTAG GCTACGAAGACAGCTCGTTCATTGGCGTGCTGGAGACGGCAGCGCGCATG TCGCTCGGCGGTAGGGCTTCCGCGTCAATACCATGTTCCATCGTGTTTGT TTGAGTTCGTGTCTGCCTGCTTGCCTGCTTTTGCGTTTCTTTGTTTCCAT TTATTTATGCACGCGCGTCTGTCTGTGTGTGGAAGGATTGGTGATTGGTT ACGCGTGTATATATTTTTAAACCATGCGATTCGCGTAGCGTAGCTATTAA AACGTGCCGCACGGCTCCTTTTGTTTCAACATTTGTTGATGTGGCCCATT TTAAATACGTAAGTGTTATGTGGAACCCTTTCACCAAAAAGCATTAGTAT CGGTCTACTCGTCAACGAGAAAGAAAGAGACGAGCCTTTCTATGTTCGAG CAACCCTTTTCCTTGCCGCCAAATGTTTTACGACGTTGTGTACGGTCGGT CAGGCTACCCTCGTAATCTCACCTCCTGCCTCAGCTCCCGCCCCTTCTAA ACCGGAGGAAAATGTATGGGTTTTAAAGTGTCCTATCGTCGAAGGATGTA ACCGTCGTTTGTGCGTACGAATATTTTGCTTCTCTTCATGCGCCCGGGTC CCTCTTCCCCGCGAAGGTCCCGTGGTCGGGCTGGTGTTGGGCATGCTGGG ATCGTTCACCTTGGGCTACGTTTTCGACGACGAGATGACGGAGATCACGC TAACGGTGATCGTCTGCTTCAGCGCCTTCATGATCTCCGAGGCCACCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig139619:396..1245+

>mRNA_H-elongata_contig139619.2757.1 ID=mRNA_H-elongata_contig139619.2757.1|Name=mRNA_H-elongata_contig139619.2757.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig139619:396..1245+ (Himanthalia elongata Himel1 dioecious)
GGGGTCTCGGAGCGTCTGGCGATTTTGATCGAGGGCGAGTCGCTGCTCAA
CGACGCGGCGGCCATCGTGATCTTCATCGTCTTCCGCGATGCATTCGTAG
GCTACGAAGACAGCTCGTTCATTGGCGTGCTGGAGACGGCAGCGCGCATG
TCGCTCGGCGGGGGTCTCGGAGCGTCTGGCGATTTTGATCGAGGGCGAGT
CGCTGCTCAACGACGCGGCGGCCATCGTGATCTTCATCGTCTTCCGCGAT
GCATTCGTAGGCTACGAAGACAGCTCGTTCATTGGCGTGCTGGAGACGGC
AGCGCGCATGTCGCTCGGCGGTCCCGTGGTCGGGCTGGTGTTGGGCATGC
TGGGATCGTTCACCTTGGGCTACGTTTTCGACGACGAGATGACGGAGATC
ACGCTAACGGTGATCGTCTGCTTCAGCGCCTTCATGATCTCCGAGGCCAC
CGAGGTCCCGTGGTCGGGCTGGTGTTGGGCATGCTGGGATCGTTCACCTT
GGGCTACGTTTTCGACGACGAGATGACGGAGATCACGCTAACGGTGATCG
TCTGCTTCAGCGCCTTCATGATCTCCGAGGCCACCGAG
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