mRNA_H-elongata_contig139582.2753.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139582.2753.1
Unique NamemRNA_H-elongata_contig139582.2753.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139582.2753.1 vs. uniprot
Match: D8LQZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ7_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.010e-25
Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:  250 LSPWEIELAKAGGTWKGPDAIRDEKERCRQWCQMAKASLEPSKEXXXXXXXXXXXGRHGEDGHVSERDRRQRLRKLIEAAELNTSFFLVPGLSDKQVM 543
            LSPWE+ELAKA GTW+G   + DEKERCRQWC +AKASL+  ++            R GE        R QRLR+L++AAELN+SFFLVPGL+DKQV+
Sbjct:   88 LSPWEMELAKAAGTWEGTGGVGDEKERCRQWCMIAKASLQAEEKEREKD------NRRGEGKLTGGTARHQRLRQLVDAAELNSSFFLVPGLNDKQVL 179
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BLAST of mRNA_H-elongata_contig139582.2753.1 vs. uniprot
Match: A0A6H5L231_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L231_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.540e-12
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  250 LSPWEIELAKAGGTWKGPDAIRDEKERCRQWCQMAKASLE 369
            LSPWE+ELAKA GTW+GP  + DEKERCRQWC +AKASL+
Sbjct:  556 LSPWEMELAKAAGTWEGPGGVGDEKERCRQWCMIAKASLQ 595
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139582.2753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQZ7_ECTSI1.010e-2556.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L231_9PHAE5.540e-1275.00Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139582contigH-elongata_contig139582:437..1559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002240.1
Exons3
Model size543
Cds size543
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139582.2753.1prot_H-elongata_contig139582.2753.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139582 437..1559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929829.443069-CDS-H-elongata_contig139582:436..5351622929829.443069-CDS-H-elongata_contig139582:436..535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139582 437..535 -
1691679174.7125676-CDS-H-elongata_contig139582:436..5351691679174.7125676-CDS-H-elongata_contig139582:436..535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139582 437..535 -
1622929829.4621782-CDS-H-elongata_contig139582:1040..14551622929829.4621782-CDS-H-elongata_contig139582:1040..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139582 1041..1455 -
1691679174.722704-CDS-H-elongata_contig139582:1040..14551691679174.722704-CDS-H-elongata_contig139582:1040..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139582 1041..1455 -
1622929829.4737573-CDS-H-elongata_contig139582:1530..15591622929829.4737573-CDS-H-elongata_contig139582:1530..1559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139582 1531..1559 -
1691679174.7304468-CDS-H-elongata_contig139582:1530..15591691679174.7304468-CDS-H-elongata_contig139582:1530..1559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139582 1531..1559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139582.2753.1

>prot_H-elongata_contig139582.2753.1 ID=prot_H-elongata_contig139582.2753.1|Name=mRNA_H-elongata_contig139582.2753.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
PPPPPPLPSAAAGNGGMTSWNGGDTESQSGVMMEVDEAQHSPLPPPPPPL
PPLPPVSPPPPPPRRSAVTPPPPPPPPLPPPPPLSPWEIELAKAGGTWKG
PDAIRDEKERCRQWCQMAKASLEPSKEKEKERERDGGGGRHGEDGHVSER
DRRQRLRKLIEAAELNTSFFLVPGLSDKQVM
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mRNA from alignment at H-elongata_contig139582:437..1559-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139582.2753.1 ID=mRNA_H-elongata_contig139582.2753.1|Name=mRNA_H-elongata_contig139582.2753.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1123bp|location=Sequence derived from alignment at H-elongata_contig139582:437..1559- (Himanthalia elongata Himel1 dioecious)
CCGCCGCCGCCGCCACCACTTCCGTCGGCGTCCGGAGAGGGAAATCAGAA
TCCGGGGAATGGCGCTTGGCACGCTTCTGGGGACGGAGGAAATGGCAACG
GTAGCGCGGCTGGAAATGGGGGGATGACATCGTGGAACGGAGGCGACACG
GAGAGTCAAAGTGGAGTGATGATGGAAGTGGATGAGGCGCAGCATTCGCC
GCTGCCCCCGCCGCCCCCGCCATTACCCCCGCTTCCTCCGGTGTCCCCGC
CGCCGCCTCCGCCTCGGCGGTCGGCCGTCACGCCTCCGCCTCCGCCTCCT
CCGCCGTTACCGCCTCCGCCGCCGTTGTCGCCCTGGGAGATCGAGCTGGC
GAAGGCGGGAGGAACCTGGAAGGGTCCCGACGCTATCAGGGACGAGAAGG
AGAGGTGTAGGCAGTGGTGCCAAATGGCGAAGGCGTCGCTGGAGCCCTCG
AAGGAGAAGGAGAAGGAGAGGGAGAGGGATGGCGGTGGGGGTCGGCATGG
GGAGGACGGGCACGTGAGTGTTAATGCGGTGTTGTGGTGTGGACGCGCTT
GGTTTGCGTTTTACCGCTTGGTTGTCGGTTGATTGGTTGGTTGTAATTTT
TCGTTCTTTTCATTAAAGGTTTTTTTTTTTTCTTTTGTTATGTAATTTAG
TTTCATCGTTGCTTATGTTTTTTCGAACACTTCCCAACACATTACATATT
TACAATCCGGGGAACCAAGTATCATGAGGTTCGAGTTGGTAGATTGAACA
CTTATTACACGAGCACCTCATGTGATTGAGCTGGGTGCTTCAATCATTGT
CGCATTGGATCAAGAGCAGTATCATGTCATCTTTATTTTTGGGTTCATTT
TGTTTTCAAGGAGGTGCTAATTGCCTCCCTGGCGTTCTAGCTAGTTCAAG
TTTTTAAAAATAAATAAATAATATCGTGGAACCGCTATCGTTTGCCTCGG
GGAAAATGCCACCTGATAGCAATGATGATTGATGATGGATAATGATGCCA
CAGCAGGCGGCGGGGAAGGATAAGGAAAGGGATCGGCGACAGCGACTGCG
AAAGCTCATCGAAGCGGCGGAACTGAACACCTCGTTCTTTTTGGTGCCGG
GGCTTAGTGATAAACAGGTGATG
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Coding sequence (CDS) from alignment at H-elongata_contig139582:437..1559-

>mRNA_H-elongata_contig139582.2753.1 ID=mRNA_H-elongata_contig139582.2753.1|Name=mRNA_H-elongata_contig139582.2753.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig139582:437..1559- (Himanthalia elongata Himel1 dioecious)
CCGCCGCCGCCGCCACCACTTCCGTCGGCCCGCCGCCGCCGCCACCACTT
CCGTCGGCCGCGGCTGGAAATGGGGGGATGACATCGTGGAACGGAGGCGA
CACGGAGAGTCAAAGTGGAGTGATGATGGAAGTGGATGAGGCGCAGCATT
CGCCGCTGCCCCCGCCGCCCCCGCCATTACCCCCGCTTCCTCCGGTGTCC
CCGCCGCCGCCTCCGCCTCGGCGGTCGGCCGTCACGCCTCCGCCTCCGCC
TCCTCCGCCGTTACCGCCTCCGCCGCCGTTGTCGCCCTGGGAGATCGAGC
TGGCGAAGGCGGGAGGAACCTGGAAGGGTCCCGACGCTATCAGGGACGAG
AAGGAGAGGTGTAGGCAGTGGTGCCAAATGGCGAAGGCGTCGCTGGAGCC
CTCGAAGGAGAAGGAGAAGGAGAGGGAGAGGGATGGCGGTGGGGGTCGGC
ATGGGGAGGACGGGCACGTGAGTCGCGGCTGGAAATGGGGGGATGACATC
GTGGAACGGAGGCGACACGGAGAGTCAAAGTGGAGTGATGATGGAAGTGG
ATGAGGCGCAGCATTCGCCGCTGCCCCCGCCGCCCCCGCCATTACCCCCG
CTTCCTCCGGTGTCCCCGCCGCCGCCTCCGCCTCGGCGGTCGGCCGTCAC
GCCTCCGCCTCCGCCTCCTCCGCCGTTACCGCCTCCGCCGCCGTTGTCGC
CCTGGGAGATCGAGCTGGCGAAGGCGGGAGGAACCTGGAAGGGTCCCGAC
GCTATCAGGGACGAGAAGGAGAGGTGTAGGCAGTGGTGCCAAATGGCGAA
GGCGTCGCTGGAGCCCTCGAAGGAGAAGGAGAAGGAGAGGGAGAGGGATG
GCGGTGGGGGTCGGCATGGGGAGGACGGGCACGTGAGTGAAAGGGATCGG
CGACAGCGACTGCGAAAGCTCATCGAAGCGGCGGAACTGAACACCTCGTT
CTTTTTGGTGCCGGGGCTTAGTGATAAACAGGTGATGGAAAGGGATCGGC
GACAGCGACTGCGAAAGCTCATCGAAGCGGCGGAACTGAACACCTCGTTC
TTTTTGGTGCCGGGGCTTAGTGATAAACAGGTGATG
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