mRNA_H-elongata_contig139552.2751.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139552.2751.1
Unique NamemRNA_H-elongata_contig139552.2751.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139552.2751.1 vs. uniprot
Match: D8LDU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU5_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.950e-36
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 IYSHP---LRARIELSLPDGQECSKSALSEAAQEQLDMYDKDLYLEPDCINVTVPLPVHCNYMGLGQECRGCYMTCEGVMKYMEDFPDEIQTW 270
            I+SHP   + A +  +    +EC  S+LS+AAQEQL MYDKDLYLEPDC+N   P+PVHCNYMGLGQECRGC+MTC+G  +Y++DF +EI  W
Sbjct:    3 IFSHPAAIIFAVLSFARVKAEECIVSSLSDAAQEQLSMYDKDLYLEPDCVNGASPMPVHCNYMGLGQECRGCFMTCDGATRYLDDFAEEISVW 95
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BLAST of mRNA_H-elongata_contig139552.2751.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 9.410e-21
Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   58 CSKSALSEAAQEQLDMYDKDLYLEPDCINVTVPLPVHCNYMGLGQECRGCYMTCEGVMKYMEDFPDEI 261
            CS  +L++A Q+QL +YD D+YLE DC+N + PLP+ CNYMGLGQECRGC++TC G + Y++D  + I
Sbjct:  584 CSMDSLNDADQQQLALYDNDMYLEDDCVNDSTPLPLGCNYMGLGQECRGCFLTCAGALTYIDDKAEHI 651
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BLAST of mRNA_H-elongata_contig139552.2751.1 vs. uniprot
Match: A0A6H5KP24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP24_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.610e-16
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  103 MYDKDLYLEPDCINVTVPLPVHCNYMGLGQECRGCYMTCE 222
            MYDK LYLEPDC+N   P+PVHCNYMGLGQECRGC+M  E
Sbjct:    1 MYDKGLYLEPDCVNGASPMPVHCNYMGLGQECRGCFMDKE 40
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BLAST of mRNA_H-elongata_contig139552.2751.1 vs. uniprot
Match: A0A6H5KWI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI6_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 9.290e-16
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   52 QECSKSALSEAAQEQLDMYDKDLYLEPDCINVTVPLPVHCNYMGLGQECRGCYMTCEGV 228
            Q CS+ +L++  Q+QL++Y+ D+YLE DC+N + PLP+ CNYMGLGQECRGC++    V
Sbjct:  487 QSCSRDSLNDVDQQQLNLYENDMYLEDDCVNDSTPLPLGCNYMGLGQECRGCFLALAHV 545
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139552.2751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LDU5_ECTSI2.950e-3660.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDU6_ECTSI9.410e-2155.88N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5KP24_9PHAE1.610e-1677.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWI6_9PHAE9.290e-1654.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139552contigH-elongata_contig139552:380..667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.9587638-CDS-H-elongata_contig139552:379..6671622929827.9587638-CDS-H-elongata_contig139552:379..667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139552 380..667 -
1691679174.5764935-CDS-H-elongata_contig139552:379..6671691679174.5764935-CDS-H-elongata_contig139552:379..667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139552 380..667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139552.2751.1prot_H-elongata_contig139552.2751.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139552 380..667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139552.2751.1

>prot_H-elongata_contig139552.2751.1 ID=prot_H-elongata_contig139552.2751.1|Name=mRNA_H-elongata_contig139552.2751.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
IYSHPLRARIELSLPDGQECSKSALSEAAQEQLDMYDKDLYLEPDCINVT
VPLPVHCNYMGLGQECRGCYMTCEGVMKYMEDFPDEIQTWVSLDC*
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mRNA from alignment at H-elongata_contig139552:380..667-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139552.2751.1 ID=mRNA_H-elongata_contig139552.2751.1|Name=mRNA_H-elongata_contig139552.2751.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig139552:380..667- (Himanthalia elongata Himel1 dioecious)
ATTTATTCTCACCCGCTTCGTGCACGAATTGAACTTTCTTTGCCAGATGG
TCAAGAATGCAGCAAGTCGGCTCTCTCGGAGGCTGCCCAGGAGCAGCTCG
ACATGTACGACAAGGACCTCTACCTAGAGCCCGATTGCATCAATGTCACT
GTGCCTTTGCCCGTACACTGCAACTACATGGGCCTCGGGCAGGAATGCCG
CGGATGCTACATGACCTGCGAAGGAGTCATGAAATACATGGAAGACTTTC
CGGACGAGATTCAAACCTGGGTGAGCCTTGATTGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig139552:380..667-

>mRNA_H-elongata_contig139552.2751.1 ID=mRNA_H-elongata_contig139552.2751.1|Name=mRNA_H-elongata_contig139552.2751.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig139552:380..667- (Himanthalia elongata Himel1 dioecious)
ATTTATTCTCACCCGCTTCGTGCACGAATTGAACTTTCTTTGCCAGATGG
TCAAGAATGCAGCAAGTCGGCTCTCTCGGAGGCTGCCCAGGAGCAGCTCG
ACATGTACGACAAGGACCTCTACCTAGAGCCCGATTGCATCAATGTCACT
GTGCCTTTGCCCGTACACTGCAACTACATGGGCCTCGGGCAGGAATGCCG
CGGATGCTACATGACCTGCGAAGGAGTCATGAAATACATGGAAGACTTTC
CGGACGAGATTCAAACCTGGGTGAGCCTTGATTGCTAAATTTATTCTCAC
CCGCTTCGTGCACGAATTGAACTTTCTTTGCCAGATGGTCAAGAATGCAG
CAAGTCGGCTCTCTCGGAGGCTGCCCAGGAGCAGCTCGACATGTACGACA
AGGACCTCTACCTAGAGCCCGATTGCATCAATGTCACTGTGCCTTTGCCC
GTACACTGCAACTACATGGGCCTCGGGCAGGAATGCCGCGGATGCTACAT
GACCTGCGAAGGAGTCATGAAATACATGGAAGACTTTCCGGACGAGATTC
AAACCTGGGTGAGCCTTGATTGCTAA
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