mRNA_H-elongata_contig139540.2749.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139540.2749.1
Unique NamemRNA_H-elongata_contig139540.2749.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139540.2749.1 vs. uniprot
Match: D7FMM2_ECTSI (GE20757 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM2_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.120e-23
Identity = 41/58 (70.69%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 GPGQVALGLSSPLFITLLILYVSGIPLLEQQHDKKYGDDPRYQEYKRNTPLLVPDVSK 174
            GPG+VALG +SP FIT LI+YVSG+P+LEQQHD+KYG DPRY+E+K NTP+++PD+SK
Sbjct:  251 GPGRVALGFASPAFITALIMYVSGVPMLEQQHDEKYGGDPRYREWKENTPMILPDMSK 308
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BLAST of mRNA_H-elongata_contig139540.2749.1 vs. uniprot
Match: A0A0G4EDP8_VITBC (S5A_REDUCTASE domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EDP8_VITBC)

HSP 1 Score: 87.0 bits (214), Expect = 7.960e-19
Identity = 35/60 (58.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 GPGQVALGLSSPLFITLLILYVSGIPLLEQQHDKKYGDDPRYQEYKRNTPLLVPDVSKFF 180
            GP  VALG  SP F++ L+L+VSG+PL E++ DK++GDDP+YQEYK++TPL++PD++K F
Sbjct:  301 GPKMVALGALSPAFVSSLLLFVSGVPLAEKRADKRFGDDPQYQEYKKSTPLIIPDLTKVF 360
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BLAST of mRNA_H-elongata_contig139540.2749.1 vs. uniprot
Match: A0A699ZCD9_HAELA (S5A_REDUCTASE domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZCD9_HAELA)

HSP 1 Score: 70.9 bits (172), Expect = 1.010e-14
Identity = 28/51 (54.90%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   28 SSPLFITLLILYVSGIPLLEQQHDKKYGDDPRYQEYKRNTPLLVPDVSKFF 180
            +SPLF+ LL+ YVSG+P+LE+Q D+++G +  YQ YK +TP+LVPD+S+ F
Sbjct:   28 ASPLFVMLLLRYVSGVPILERQADQRWGSEAEYQAYKASTPVLVPDLSRLF 78
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BLAST of mRNA_H-elongata_contig139540.2749.1 vs. uniprot
Match: A0A835Z1P4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1P4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.450e-13
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 GPGQVALGLSSPLFITLLILYVSGIPLLEQQHDKKYGDDPRYQEYKRNTPLLVP 162
            GP QV +G  SPLFI+ LILYVSGIPLLE + +K +G D +Y +YK  TPLLVP
Sbjct:  240 GPRQVLIGAVSPLFISGLILYVSGIPLLEDKMNKDHGQDEKYLKYKETTPLLVP 293
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BLAST of mRNA_H-elongata_contig139540.2749.1 vs. uniprot
Match: A0A6S9K4Z3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9K4Z3_HETAK)

HSP 1 Score: 71.6 bits (174), Expect = 2.770e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 GPGQVALGLSSPLFITLLILYVSGIPLLEQQHDKKYGDDPRYQEYKRNTPLLVP 162
            GPGQ+ALGL+SPLF TLL+  VSGIP+LE+++D +Y +   YQ YK  T +L+P
Sbjct:  242 GPGQLALGLASPLFTTLLLTQVSGIPMLEKKYDARYANSAEYQAYKARTNVLIP 295
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BLAST of mRNA_H-elongata_contig139540.2749.1 vs. uniprot
Match: A0A699YH12_HAELA (S5A_REDUCTASE domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YH12_HAELA)

HSP 1 Score: 70.9 bits (172), Expect = 4.040e-13
Identity = 28/51 (54.90%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   28 SSPLFITLLILYVSGIPLLEQQHDKKYGDDPRYQEYKRNTPLLVPDVSKFF 180
            +SPLF+ LL+ YVSG+P+LE+Q D+++G +  YQ YK +TP+LVPD+S+ F
Sbjct:  230 ASPLFVMLLLRYVSGVPILERQADQRWGSEAEYQAYKASTPVLVPDLSRLF 280
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BLAST of mRNA_H-elongata_contig139540.2749.1 vs. uniprot
Match: A0A507BEV5_9PEZI (S5A_REDUCTASE domain-containing protein n=1 Tax=Thyridium curvatum TaxID=1093900 RepID=A0A507BEV5_9PEZI)

HSP 1 Score: 71.2 bits (173), Expect = 4.970e-13
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    7 GQVALGLSSPLFITLLILYVSGIPLLEQQHDKKYGDDPRYQEYKRNTPLLVPDVSKF 177
            G  AL   SPLF T L+L VSG+PL E+++DK+YGD   YQ++K+NTP LVP++ +F
Sbjct:  269 GVAALAAVSPLFTTFLLLKVSGVPLSEKKYDKRYGDRKDYQQWKKNTPRLVPELEQF 325
[Close]
BLAST of mRNA_H-elongata_contig139540.2749.1 vs. uniprot
Match: A0A7X8CZJ5_9SPIR (DUF1295 domain-containing protein n=1 Tax=Treponema sp. TaxID=166 RepID=A0A7X8CZJ5_9SPIR)

HSP 1 Score: 65.5 bits (158), Expect = 1.010e-12
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    7 GQVALGLSSPLFITLLILYVSGIPLLEQQHDKKYGDDPRYQEYKRNTPLLVP 162
            G + + +  P+FIT+L+L+VSGIPLLE+  D KYG DP YQEYK  T + +P
Sbjct:    9 GLLWISVLGPVFITVLLLFVSGIPLLEKSADAKYGSDPAYQEYKSRTSVFIP 60
[Close]
BLAST of mRNA_H-elongata_contig139540.2749.1 vs. uniprot
Match: V5WK80_9SPIO (S5A_REDUCTASE domain-containing protein n=1 Tax=Salinispira pacifica TaxID=1307761 RepID=V5WK80_9SPIO)

HSP 1 Score: 69.3 bits (168), Expect = 1.350e-12
Identity = 27/47 (57.45%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   28 SSPLFITLLILYVSGIPLLEQQHDKKYGDDPRYQEYKRNTPLLVPDV 168
            + PLFITL++ YVSG+PLLE+Q DKK+G+ P Y++YK  TPL++P +
Sbjct:  209 AGPLFITLMLRYVSGVPLLEKQADKKWGEKPEYRDYKARTPLIIPRI 255
[Close]
BLAST of mRNA_H-elongata_contig139540.2749.1 vs. uniprot
Match: A0A652ZWI2_9SPIR (S5A_REDUCTASE domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A652ZWI2_9SPIR)

HSP 1 Score: 68.9 bits (167), Expect = 1.560e-12
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    7 GQVALGLSSPLFITLLILYVSGIPLLEQQHDKKYGDDPRYQEYKRNTPLLVP 162
            G + L +  P+FITLL+L+VSGIPLLE+  + KYG+DP YQ+YKR T + +P
Sbjct:  199 GLLYLSILGPVFITLLLLFVSGIPLLEKSAEAKYGEDPAYQDYKRKTSIFIP 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139540.2749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMM2_ECTSI1.120e-2370.69GE20757 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM2... [more]
A0A0G4EDP8_VITBC7.960e-1958.33S5A_REDUCTASE domain-containing protein n=1 Tax=Vi... [more]
A0A699ZCD9_HAELA1.010e-1454.90S5A_REDUCTASE domain-containing protein n=1 Tax=Ha... [more]
A0A835Z1P4_9STRA2.450e-1362.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9K4Z3_HETAK2.770e-1357.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A699YH12_HAELA4.040e-1354.90S5A_REDUCTASE domain-containing protein n=1 Tax=Ha... [more]
A0A507BEV5_9PEZI4.970e-1354.39S5A_REDUCTASE domain-containing protein n=1 Tax=Th... [more]
A0A7X8CZJ5_9SPIR1.010e-1253.85DUF1295 domain-containing protein n=1 Tax=Treponem... [more]
V5WK80_9SPIO1.350e-1257.45S5A_REDUCTASE domain-containing protein n=1 Tax=Sa... [more]
A0A652ZWI2_9SPIR1.560e-1255.77S5A_REDUCTASE domain-containing protein n=2 Tax=ro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139540contigH-elongata_contig139540:190..1017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue4.8e-19
Seed eggNOG ortholog2880.D7FMM2
EggNOG free text desc.oxidoreductase activity, acting on the CH-CH group of donors
EggNOG OGsCOG3752@1,KOG4650@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.8736484-CDS-H-elongata_contig139540:189..3111622929827.8736484-CDS-H-elongata_contig139540:189..311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139540 190..311 +
1691679174.5376897-CDS-H-elongata_contig139540:189..3111691679174.5376897-CDS-H-elongata_contig139540:189..311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139540 190..311 +
1622929827.8832157-CDS-H-elongata_contig139540:956..10171622929827.8832157-CDS-H-elongata_contig139540:956..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139540 957..1017 +
1691679174.5462508-CDS-H-elongata_contig139540:956..10171691679174.5462508-CDS-H-elongata_contig139540:956..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139540 957..1017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139540.2749.1prot_H-elongata_contig139540.2749.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139540 190..1017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139540.2749.1

>prot_H-elongata_contig139540.2749.1 ID=prot_H-elongata_contig139540.2749.1|Name=mRNA_H-elongata_contig139540.2749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
GPGQVALGLSSPLFITLLILYVSGIPLLEQQHDKKYGDDPRYQEYKRNTP
LLVPDVSKFF*
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mRNA from alignment at H-elongata_contig139540:190..1017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139540.2749.1 ID=mRNA_H-elongata_contig139540.2749.1|Name=mRNA_H-elongata_contig139540.2749.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=828bp|location=Sequence derived from alignment at H-elongata_contig139540:190..1017+ (Himanthalia elongata Himel1 dioecious)
GGGCCCGGTCAGGTGGCGCTTGGACTTTCAAGCCCGTTGTTCATCACGTT
GCTAATCCTGTACGTCAGCGGCATTCCACTGTTGGAGCAGCAACACGATA
AGAAGTACGGCGACGATCCTAGGTAATGCAGATTCCCGGAAAATGTTTCG
AACCCTCATCGTGATGGGTGGGGGGGGGGGGGGGGGGGGACAAAACCGTG
GGGGTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTNNNNNNNNNNTGCG
GAGGCGGGTGTTGGGGGGTGGTGGGGGGGGGGTGGGGGGGGGGGGTGGGG
GGGGATGGGTGGGGGGTGGAGATCGAAACCCTGGTGACATTTTTTTTTCT
TGGTTGGTTTTGTATGTTAGATGCTTTGGTATTGCAGGGAATAACTTTGG
CGTCGTAACGCCCACAACCAGTTATCTTACAGTGGTGGTGTCGACGTGCA
CCTATACCATGACGCCTTTCTTTCTAGACCATCGGACGAGATCACGTACA
TTGCAGTGGCAGTTAAAGCACCCACTCACTCCTTGCTGAGGGGTCTATTA
TAGACTATATCGATATCGATAAAAAGGCATGTCCCGAAGACGACTACTAC
AGCACCGAGTAGCAAAACACGATAGTTTTGCTCTTTTCACCTACGTTCCT
ATTTGCGTGCTCGCCCTTCCTCATAGAGCCCTTCCGCTTCCTCCCTCGGT
GGTACTTGATACCGTACCGTACCGTGCCATACCATACCGTACCGTACCGT
GCACGATGTGGTGCCAGGTACCAAGAGTACAAGAGGAACACACCGCTCCT
GGTTCCGGACGTGTCCAAGTTTTTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig139540:190..1017+

>mRNA_H-elongata_contig139540.2749.1 ID=mRNA_H-elongata_contig139540.2749.1|Name=mRNA_H-elongata_contig139540.2749.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig139540:190..1017+ (Himanthalia elongata Himel1 dioecious)
GGGCCCGGTCAGGTGGCGCTTGGACTTTCAAGCCCGTTGTTCATCACGTT
GCTAATCCTGTACGTCAGCGGCATTCCACTGTTGGAGCAGCAACACGATA
AGAAGTACGGCGACGATCCTAGGGGCCCGGTCAGGTGGCGCTTGGACTTT
CAAGCCCGTTGTTCATCACGTTGCTAATCCTGTACGTCAGCGGCATTCCA
CTGTTGGAGCAGCAACACGATAAGAAGTACGGCGACGATCCTAGGTACCA
AGAGTACAAGAGGAACACACCGCTCCTGGTTCCGGACGTGTCCAAGTTTT
TCTGAGTACCAAGAGTACAAGAGGAACACACCGCTCCTGGTTCCGGACGT
GTCCAAGTTTTTCTGA
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