mRNA_H-elongata_contig139519.2748.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139519.2748.1
Unique NamemRNA_H-elongata_contig139519.2748.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139519.2748.1 vs. uniprot
Match: D8LM01_ECTSI (Similar to insulin-degrading enzyme n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM01_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.110e-30
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    1 GYEGEGSLHALLHGRGWISSLHSGSVVTGTDFQLFRLSASLTEEGERHTNEIVELCFKFISLLREEPPQ 207
            GYEGEG LH LLHGRGW+SSL +GS+VTGTDFQLFRLS SLTEEGERHT+EI+ELC +FI+LLR EPPQ
Sbjct:  362 GYEGEGGLHKLLHGRGWVSSLSAGSMVTGTDFQLFRLSLSLTEEGERHTDEIIELCHRFIALLRSEPPQ 430          
BLAST of mRNA_H-elongata_contig139519.2748.1 vs. uniprot
Match: UPI000CF68311 (insulinase family protein n=5 Tax=Pseudoalteromonas TaxID=53246 RepID=UPI000CF68311)

HSP 1 Score: 72.8 bits (177), Expect = 2.250e-13
Identity = 32/69 (46.38%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 GYEGEGSLHALLHGRGWISSLHSGSVVTGTDFQLFRLSASLTEEGERHTNEIVELCFKFISLLREEPPQ 207
            GYEGEGSLH+LL  +GWI++L +G  + G++F+ F +S +LT++G  +  +IVE+ F +I+L+RE   Q
Sbjct:  282 GYEGEGSLHSLLKSQGWINALSAGGGINGSNFKDFNISLALTDDGIEYYQDIVEMVFAYIALIRENTGQ 350          
BLAST of mRNA_H-elongata_contig139519.2748.1 vs. uniprot
Match: A0A835YK48_9STRA (Metalloenzyme, LuxS/M16 peptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK48_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.880e-13
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 GYEGEGSLHALLHGRGWISSLHSGSVVTGTDFQLFRLSASLTEEGERHTNEIVELCFKFISLLREEPP 204
            G+E EGSLH  L  RGW  S+ +G  V  +DF L RLS  LTEEG  H +++VE+ +  I+LLRE PP
Sbjct:  291 GHEAEGSLHQALTTRGWARSISAGMQVDVSDFGLLRLSIGLTEEGLEHIDDVVEMVYASINLLRETPP 358          
BLAST of mRNA_H-elongata_contig139519.2748.1 vs. uniprot
Match: A0A2D5L9Q1_9GAMM (Protease 3 n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D5L9Q1_9GAMM)

HSP 1 Score: 70.5 bits (171), Expect = 1.470e-12
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 GYEGEGSLHALLHGRGWISSLHSGSVVTGTDFQLFRLSASLTEEGERHTNEIVELCFKFISLLREEPPQ 207
            G+EGEGSLH LL+ +GWI  L +GS     +  L  +S  LTE G  H  EI +L F+++++LR +PPQ
Sbjct:  325 GHEGEGSLHHLLNAKGWIEGLSAGSQDLDRNTSLLTVSIELTEAGRAHVEEITDLLFQYVNMLRAQPPQ 393          
BLAST of mRNA_H-elongata_contig139519.2748.1 vs. uniprot
Match: A0A1D1UZY2_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UZY2_RAMVA)

HSP 1 Score: 70.5 bits (171), Expect = 1.470e-12
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 GYEGEGSLHALLHGRGWISSLHSGSVVTGTDFQLFRLSASLTEEGERHTNEIVELCFKFISLLREEPPQ 207
            G+EG GSL + L  +GW ++LH+G       FQ F L A LTEEG +HT+EIV++ F+++++LR+  PQ
Sbjct:  326 GHEGPGSLLSALKAKGWSNTLHAGEDEGAEGFQFFMLGADLTEEGLKHTDEIVQMVFEYLNMLRKAGPQ 394          
BLAST of mRNA_H-elongata_contig139519.2748.1 vs. uniprot
Match: A0A290TSY4_PSEO7 (Protease 3 n=1 Tax=Pseudoalteromonas piscicida TaxID=43662 RepID=A0A290TSY4_PSEO7)

HSP 1 Score: 68.9 bits (167), Expect = 5.050e-12
Identity = 28/65 (43.08%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 GYEGEGSLHALLHGRGWISSLHSGSVVTGTDFQLFRLSASLTEEGERHTNEIVELCFKFISLLRE 195
            GYEG+GSL+++L  +GWI++L +G  +TG++F+ F +S +LT+EG  +  +IVE+ F++I+L+++
Sbjct:  281 GYEGKGSLYSILKSQGWINALSAGGGITGSNFRDFNISFALTDEGIEYYEDIVEMLFEYIALIKQ 345          
BLAST of mRNA_H-elongata_contig139519.2748.1 vs. uniprot
Match: A0A2K9K036_9GAMM (Protease 3 n=25 Tax=Pseudoalteromonadaceae TaxID=267888 RepID=A0A2K9K036_9GAMM)

HSP 1 Score: 68.9 bits (167), Expect = 5.100e-12
Identity = 28/65 (43.08%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 GYEGEGSLHALLHGRGWISSLHSGSVVTGTDFQLFRLSASLTEEGERHTNEIVELCFKFISLLRE 195
            GYEG+GSL+++L  +GWI++L +G  +TG++F+ F +S +LT+EG  +  +IVE+ F++I+L+++
Sbjct:  258 GYEGKGSLYSILKSQGWINALSAGGGITGSNFRDFNISFALTDEGIEYYEDIVEMLFEYIALIKQ 322          
BLAST of mRNA_H-elongata_contig139519.2748.1 vs. uniprot
Match: U1J7K5_9GAMM (Protease 3 n=8 Tax=Pseudoalteromonas TaxID=53246 RepID=U1J7K5_9GAMM)

HSP 1 Score: 68.9 bits (167), Expect = 5.110e-12
Identity = 28/66 (42.42%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 GYEGEGSLHALLHGRGWISSLHSGSVVTGTDFQLFRLSASLTEEGERHTNEIVELCFKFISLLREE 198
            GYEGEGSL+++L  +GWI++L +G  V+G++F+ F +S +LT+EG  +  ++VE+ F++I+L++ +
Sbjct:  303 GYEGEGSLYSILKAQGWINALSAGGGVSGSNFKDFNISFALTDEGINYYEDVVEMAFEYIALIKSQ 368          
BLAST of mRNA_H-elongata_contig139519.2748.1 vs. uniprot
Match: A4C678_9GAMM (Protease 3 n=1 Tax=Pseudoalteromonas tunicata D2 TaxID=87626 RepID=A4C678_9GAMM)

HSP 1 Score: 68.6 bits (166), Expect = 6.980e-12
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 GYEGEGSLHALLHGRGWISSLHSGSVVTGTDFQLFRLSASLTEEGERHTNEIVELCFKFISLLR 192
            GYEG+GSL+A+L  RGWI+ L +G  + G++F+ F LS +LT+EG  H  +IVE  F ++ LL+
Sbjct:  282 GYEGQGSLYAILKQRGWINGLSAGGGINGSNFKDFNLSINLTDEGVAHYRDIVESIFAYLPLLK 345          
BLAST of mRNA_H-elongata_contig139519.2748.1 vs. uniprot
Match: A0A7Y6U056_9GAMM (Protease 3 n=4 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A7Y6U056_9GAMM)

HSP 1 Score: 68.2 bits (165), Expect = 9.530e-12
Identity = 27/65 (41.54%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 GYEGEGSLHALLHGRGWISSLHSGSVVTGTDFQLFRLSASLTEEGERHTNEIVELCFKFISLLRE 195
            GYEG+GSL+++L  +GWI++L +G  +TG++F+ F +S +LT+EG  +  +IVE+ F++++L+++
Sbjct:  281 GYEGKGSLYSILKSQGWINALSAGGGITGSNFRDFNISFALTDEGIEYYEDIVEMLFEYLALIKQ 345          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139519.2748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM01_ECTSI1.110e-3081.16Similar to insulin-degrading enzyme n=2 Tax=Ectoca... [more]
UPI000CF683112.250e-1346.38insulinase family protein n=5 Tax=Pseudoalteromona... [more]
A0A835YK48_9STRA7.880e-1351.47Metalloenzyme, LuxS/M16 peptidase-like protein n=1... [more]
A0A2D5L9Q1_9GAMM1.470e-1246.38Protease 3 n=2 Tax=Gammaproteobacteria bacterium T... [more]
A0A1D1UZY2_RAMVA1.470e-1246.38Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
A0A290TSY4_PSEO75.050e-1243.08Protease 3 n=1 Tax=Pseudoalteromonas piscicida Tax... [more]
A0A2K9K036_9GAMM5.100e-1243.08Protease 3 n=25 Tax=Pseudoalteromonadaceae TaxID=2... [more]
U1J7K5_9GAMM5.110e-1242.42Protease 3 n=8 Tax=Pseudoalteromonas TaxID=53246 R... [more]
A4C678_9GAMM6.980e-1248.44Protease 3 n=1 Tax=Pseudoalteromonas tunicata D2 T... [more]
A0A7Y6U056_9GAMM9.530e-1241.54Protease 3 n=4 Tax=Pseudoalteromonas TaxID=53246 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139519contigH-elongata_contig139519:1086..1292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue7.8e-26
Seed eggNOG ortholog2880.D8LM01
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.841827-CDS-H-elongata_contig139519:1085..12921622929827.841827-CDS-H-elongata_contig139519:1085..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139519 1086..1292 -
1691679174.5284348-CDS-H-elongata_contig139519:1085..12921691679174.5284348-CDS-H-elongata_contig139519:1085..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139519 1086..1292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139519.2748.1prot_H-elongata_contig139519.2748.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139519 1086..1292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139519.2748.1

>prot_H-elongata_contig139519.2748.1 ID=prot_H-elongata_contig139519.2748.1|Name=mRNA_H-elongata_contig139519.2748.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
GYEGEGSLHALLHGRGWISSLHSGSVVTGTDFQLFRLSASLTEEGERHTN
EIVELCFKFISLLREEPPQ
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mRNA from alignment at H-elongata_contig139519:1086..1292-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139519.2748.1 ID=mRNA_H-elongata_contig139519.2748.1|Name=mRNA_H-elongata_contig139519.2748.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig139519:1086..1292- (Himanthalia elongata Himel1 dioecious)
GGCTACGAGGGAGAGGGAAGTCTTCACGCCCTGCTGCACGGCCGGGGGTG GATCTCGAGCCTCCACTCGGGGAGTGTGGTCACGGGGACCGACTTCCAGC TCTTCCGTCTGAGCGCGTCGCTGACGGAGGAGGGGGAGCGACACACGAAC GAGATCGTGGAGCTCTGCTTCAAGTTCATCTCCCTGCTGCGAGAGGAGCC GCCTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig139519:1086..1292-

>mRNA_H-elongata_contig139519.2748.1 ID=mRNA_H-elongata_contig139519.2748.1|Name=mRNA_H-elongata_contig139519.2748.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig139519:1086..1292- (Himanthalia elongata Himel1 dioecious)
GGCTACGAGGGAGAGGGAAGTCTTCACGCCCTGCTGCACGGCCGGGGGTG
GATCTCGAGCCTCCACTCGGGGAGTGTGGTCACGGGGACCGACTTCCAGC
TCTTCCGTCTGAGCGCGTCGCTGACGGAGGAGGGGGAGCGACACACGAAC
GAGATCGTGGAGCTCTGCTTCAAGTTCATCTCCCTGCTGCGAGAGGAGCC
GCCTCAGGGCTACGAGGGAGAGGGAAGTCTTCACGCCCTGCTGCACGGCC
GGGGGTGGATCTCGAGCCTCCACTCGGGGAGTGTGGTCACGGGGACCGAC
TTCCAGCTCTTCCGTCTGAGCGCGTCGCTGACGGAGGAGGGGGAGCGACA
CACGAACGAGATCGTGGAGCTCTGCTTCAAGTTCATCTCCCTGCTGCGAG
AGGAGCCGCCTCAG
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