mRNA_H-elongata_contig139507.2747.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139507.2747.1
Unique NamemRNA_H-elongata_contig139507.2747.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139507.2747.1 vs. uniprot
Match: A0A6H5K8N1_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.640e-19
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 MTSLRREVLGGYRRLMRARLIAFKEDTTMIGASKKQLRVEFSKNKGVTDSRKIGE 165
            M SLRREVLGGYRRLMR R++AFK+DTTM+ ASK+QLR+EF+KNK VTD  KIG+
Sbjct:    1 MASLRREVLGGYRRLMRVRVVAFKDDTTMLEASKQQLRIEFNKNKAVTDPSKIGQ 55
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BLAST of mRNA_H-elongata_contig139507.2747.1 vs. uniprot
Match: D8LJV8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV8_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.980e-18
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 MTSLRREVLGGYRRLMRARLIAFKEDTTMIGASKKQLRVEFSKNKGVTDSRKI 159
            M SLRREVLGGYRRLMR R++AF++DTTM+ ASK+QLR+EF+KNK VTD  KI
Sbjct:    1 MASLRREVLGGYRRLMRVRVVAFEDDTTMLEASKQQLRIEFNKNKAVTDPSKI 53
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139507.2747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8N1_9PHAE5.640e-1974.55Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LJV8_ECTSI3.980e-1873.58Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139507contigH-elongata_contig139507:765..938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_009840.3
Exons1
Model size174
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.808396-CDS-H-elongata_contig139507:764..9381622929827.808396-CDS-H-elongata_contig139507:764..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139507 765..938 -
1691679174.520592-CDS-H-elongata_contig139507:764..9381691679174.520592-CDS-H-elongata_contig139507:764..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139507 765..938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139507.2747.1prot_H-elongata_contig139507.2747.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139507 765..938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139507.2747.1

>prot_H-elongata_contig139507.2747.1 ID=prot_H-elongata_contig139507.2747.1|Name=mRNA_H-elongata_contig139507.2747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MTSLRREVLGGYRRLMRARLIAFKEDTTMIGASKKQLRVEFSKNKGVTDS
RKIGESFL
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mRNA from alignment at H-elongata_contig139507:765..938-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139507.2747.1 ID=mRNA_H-elongata_contig139507.2747.1|Name=mRNA_H-elongata_contig139507.2747.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig139507:765..938- (Himanthalia elongata Himel1 dioecious)
ATGACATCTCTACGTCGTGAGGTGCTGGGGGGTTACAGACGCCTAATGCG
TGCTCGTCTCATCGCGTTCAAGGAAGACACTACTATGATAGGCGCTTCGA
AAAAACAATTACGAGTAGAGTTCAGCAAAAATAAGGGGGTCACTGATTCC
AGAAAGATTGGTGAGTCATTCCTT
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Coding sequence (CDS) from alignment at H-elongata_contig139507:765..938-

>mRNA_H-elongata_contig139507.2747.1 ID=mRNA_H-elongata_contig139507.2747.1|Name=mRNA_H-elongata_contig139507.2747.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig139507:765..938- (Himanthalia elongata Himel1 dioecious)
ATGACATCTCTACGTCGTGAGGTGCTGGGGGGTTACAGACGCCTAATGCG
TGCTCGTCTCATCGCGTTCAAGGAAGACACTACTATGATAGGCGCTTCGA
AAAAACAATTACGAGTAGAGTTCAGCAAAAATAAGGGGGTCACTGATTCC
AGAAAGATTGGTGAGTCATTCCTTATGACATCTCTACGTCGTGAGGTGCT
GGGGGGTTACAGACGCCTAATGCGTGCTCGTCTCATCGCGTTCAAGGAAG
ACACTACTATGATAGGCGCTTCGAAAAAACAATTACGAGTAGAGTTCAGC
AAAAATAAGGGGGTCACTGATTCCAGAAAGATTGGTGAGTCATTCCTT
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