mRNA_H-elongata_contig139484.2746.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139484.2746.1
Unique NamemRNA_H-elongata_contig139484.2746.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139484.2746.1 vs. uniprot
Match: A0A6H5KK84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK84_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.880e-16
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 MFDVLPGALGEEPVRLMYPDLLKRLDDSNDDVRRAVCGTIATFFRV 138
            MF ++PGALG+EPVRL+YP+LLKRLDDSND VR AVCGT A FFR 
Sbjct:  573 MFRMIPGALGDEPVRLIYPELLKRLDDSNDTVRMAVCGTTAAFFRA 618
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BLAST of mRNA_H-elongata_contig139484.2746.1 vs. uniprot
Match: D7FI57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI57_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 8.040e-16
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 MFDVLPGALGEEPVRLMYPDLLKRLDDSNDDVRRAVCGTIATFFRV 138
            MF ++PGALG+EPVRL+YP+LLKRLDDSND VR AVCGTIA F R 
Sbjct:  766 MFRMIPGALGDEPVRLIYPELLKRLDDSNDTVRMAVCGTIAAFLRA 811
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BLAST of mRNA_H-elongata_contig139484.2746.1 vs. uniprot
Match: K3W704_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W704_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 4.470e-11
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 MFDVLPGALGEEPVRLMYPDLLKRLDDSNDDVRRAVCGTIATFFRV 138
            +F  LPG LGEEPV  +Y ++LKRLDDSND VR+A C T +TF R 
Sbjct:  725 LFVALPGCLGEEPVHQLYAEILKRLDDSNDTVRKAACQTFSTFLRA 770
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BLAST of mRNA_H-elongata_contig139484.2746.1 vs. uniprot
Match: A0A5D6XR59_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR59_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.470e-11
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 MFDVLPGALGEEPVRLMYPDLLKRLDDSNDDVRRAVCGTIATFFRV 138
            +F  LPG LGEEPV  +Y ++LKRLDDSND VR+A C T +TF R 
Sbjct:  733 LFVALPGCLGEEPVHQLYAEILKRLDDSNDTVRKAACQTFSTFLRA 778
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BLAST of mRNA_H-elongata_contig139484.2746.1 vs. uniprot
Match: A0A7S2GSK2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GSK2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.570e-11
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 MFDVLPGALGEEPVRLMYPDLLKRLDDSNDDVRRAVCGTIATFFRV 138
            +F +LP ALGE+PV+ +YP LLKRLDDS+D VR AVCGT+  F + 
Sbjct:   81 IFTLLPRALGEKPVQELYPALLKRLDDSSDSVRLAVCGTLRAFLKA 126
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BLAST of mRNA_H-elongata_contig139484.2746.1 vs. uniprot
Match: A0A6G0XR12_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XR12_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.110e-11
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 MFDVLPGALGEEPVRLMYPDLLKRLDDSNDDVRRAVCGTIATFFRVRHSRSH 156
            +F  LP ALGEEPV  +Y D+LKRLDDSND VR+A C T  TF R    RSH
Sbjct:  710 LFVALPNALGEEPVSQLYHDILKRLDDSNDLVRKAACATYITFLRAA-PRSH 760
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BLAST of mRNA_H-elongata_contig139484.2746.1 vs. uniprot
Match: G4YK90_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YK90_PHYSP)

HSP 1 Score: 65.1 bits (157), Expect = 6.110e-11
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 MFDVLPGALGEEPVRLMYPDLLKRLDDSNDDVRRAVCGTIATFFRV 138
            +F  LPG LGEEPV  +Y ++LKRLDDSND VR+A C T ATF + 
Sbjct:  740 LFVALPGCLGEEPVHQLYAEILKRLDDSNDTVRKAACQTFATFLQA 785
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BLAST of mRNA_H-elongata_contig139484.2746.1 vs. uniprot
Match: A0A225WPQ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WPQ1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.110e-11
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 MFDVLPGALGEEPVRLMYPDLLKRLDDSNDDVRRAVCGTIATFFRV 138
            +F  LPG LGEEPV  +Y ++LKRLDDSND VR+A C T  TF R 
Sbjct:  741 LFVALPGCLGEEPVHQLYAEILKRLDDSNDTVRKAACQTFTTFLRA 786
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BLAST of mRNA_H-elongata_contig139484.2746.1 vs. uniprot
Match: A0A024U661_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U661_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.560e-10
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 MFDVLPGALGEEPVRLMYPDLLKRLDDSNDDVRRAVCGTIATFFRVRHSRSH 156
            +F  LP ALGEEPV  +Y ++LKRLDDSND VR+A C T  TF R    RSH
Sbjct:  715 LFVALPNALGEEPVSQLYHEILKRLDDSNDLVRKAACATYVTFLRAA-PRSH 765
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BLAST of mRNA_H-elongata_contig139484.2746.1 vs. uniprot
Match: A0A8J5MAE3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MAE3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.560e-10
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 MFDVLPGALGEEPVRLMYPDLLKRLDDSNDDVRRAVCGTIATFFRV 138
            +F  LPG LGEEPV  +Y ++LKRLDDSND VR+A C T  TF + 
Sbjct:  732 LFVALPGCLGEEPVHQLYAEILKRLDDSNDTVRKAACQTFTTFLKA 777
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139484.2746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK84_9PHAE5.880e-1676.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI57_ECTSI8.040e-1676.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3W704_GLOUD4.470e-1160.87Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XR59_9STRA4.470e-1160.87Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S2GSK2_9STRA4.570e-1160.87Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6G0XR12_9STRA6.110e-1161.54Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
G4YK90_PHYSP6.110e-1160.87Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A225WPQ1_9STRA6.110e-1160.87Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A024U661_9STRA1.560e-1059.62Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A8J5MAE3_9STRA1.560e-1058.70Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139484contigH-elongata_contig139484:1238..1399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1e-12
Seed eggNOG ortholog2880.D7FI57
Preferred nameHEATR2
KEGG koko:K19759
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003008,GO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007600,GO:0007605,GO:0007610,GO:0007626,GO:0008150,GO:0008344,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030534,GO:0032501,GO:0034622,GO:0035082,GO:0036158,GO:0036159,GO:0040011,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0044782,GO:0045505,GO:0048870,GO:0050877,GO:0050954,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097722,GO:0120031,GO:0120036
EggNOG free text desc.inner dynein arm assembly
EggNOG OGs2CMTW@1,2QRXT@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.7759686-CDS-H-elongata_contig139484:1237..13991622929827.7759686-CDS-H-elongata_contig139484:1237..1399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139484 1238..1399 -
1691679174.5112367-CDS-H-elongata_contig139484:1237..13991691679174.5112367-CDS-H-elongata_contig139484:1237..1399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139484 1238..1399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139484.2746.1prot_H-elongata_contig139484.2746.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139484 1238..1399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139484.2746.1

>prot_H-elongata_contig139484.2746.1 ID=prot_H-elongata_contig139484.2746.1|Name=mRNA_H-elongata_contig139484.2746.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MFDVLPGALGEEPVRLMYPDLLKRLDDSNDDVRRAVCGTIATFFRVRHSR
SHC*
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mRNA from alignment at H-elongata_contig139484:1238..1399-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139484.2746.1 ID=mRNA_H-elongata_contig139484.2746.1|Name=mRNA_H-elongata_contig139484.2746.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig139484:1238..1399- (Himanthalia elongata Himel1 dioecious)
ATGTTCGACGTACTACCGGGAGCGCTCGGCGAGGAGCCTGTGAGGCTCAT
GTACCCGGACCTCTTGAAACGCCTGGATGACAGCAATGATGACGTCAGGA
GGGCGGTGTGTGGCACGATCGCTACGTTCTTCAGAGTGAGACATTCACGT
TCACATTGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig139484:1238..1399-

>mRNA_H-elongata_contig139484.2746.1 ID=mRNA_H-elongata_contig139484.2746.1|Name=mRNA_H-elongata_contig139484.2746.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig139484:1238..1399- (Himanthalia elongata Himel1 dioecious)
ATGTTCGACGTACTACCGGGAGCGCTCGGCGAGGAGCCTGTGAGGCTCAT
GTACCCGGACCTCTTGAAACGCCTGGATGACAGCAATGATGACGTCAGGA
GGGCGGTGTGTGGCACGATCGCTACGTTCTTCAGAGTGAGACATTCACGT
TCACATTGTTGAATGTTCGACGTACTACCGGGAGCGCTCGGCGAGGAGCC
TGTGAGGCTCATGTACCCGGACCTCTTGAAACGCCTGGATGACAGCAATG
ATGACGTCAGGAGGGCGGTGTGTGGCACGATCGCTACGTTCTTCAGAGTG
AGACATTCACGTTCACATTGTTGA
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