prot_H-elongata_contig139387.2742.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig139387.2742.1
Unique Nameprot_H-elongata_contig139387.2742.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length67
Homology
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: Q9SV56_ARATH (Uncharacterized protein AT4g28900 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SV56_ARATH)

HSP 1 Score: 66.6 bits (161), Expect = 3.080e-11
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    2 KLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 66
            KL  A+YGL Q+   WF +   FLLE GF+ TYSD   ++   G D+  L+LY+DD+L+ G N +
Sbjct: 1019 KLNKAIYGLKQAPRAWFDKFSTFLLEFGFICTYSDPSLFVFLKGRDLMFLLLYMDDMLLTGNNKK 1083          
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6H5L1I6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.310e-11
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    2 KLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 66
            KL+ +LYGL+QS + W   I+  L+  G+  T+SD   Y+  SG ++TIL +Y+DDILI GGN E
Sbjct:  139 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTHSDPCVYIFVSGDELTILAIYVDDILITGGNKE 203          
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6H5K7J9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.180e-11
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    2 KLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 66
            KL+ +LYGL+QS + W   I+  L+  G+  T SD   Y+  SG ++TIL +Y+DDILI GGN E
Sbjct:   46 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILTIYVDDILITGGNKE 110          
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6L2NXI8_TANCI (RNA-directed DNA polymerase, eukaryota, reverse transcriptase zinc-binding domain protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NXI8_TANCI)

HSP 1 Score: 65.1 bits (157), Expect = 9.170e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    2 KLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 66
            KL  +LYGL Q++  WF ++  FLL IGF  +Y+DT  + L  G+  T L++Y+DDILIAG NH+
Sbjct:  126 KLTKSLYGLKQTNRQWFQKLITFLLTIGFQQSYADTSLFTLTEGLHFTTLLVYVDDILIAG-NHK 189          
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A2U1MFE7_ARTAN (Serpin n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MFE7_ARTAN)

HSP 1 Score: 65.1 bits (157), Expect = 1.070e-10
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    2 KLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 66
            KLK +LYGL Q++  WF ++   LL +GFV +Y+DT  + L S  + T+L+LY+D I++AG N  
Sbjct:  492 KLKKSLYGLKQANRQWFTKLTDLLLTLGFVQSYADTSLFTLTSTRNFTVLLLYVDGIILAGNNQS 556          
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6H5KLN6_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.460e-10
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    2 KLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 66
            KL+ +LYGL+QS + W   I+  L+  G+  T+SD   Y+  SG ++TIL +Y+DDILI GGN E
Sbjct:  664 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTHSDPCVYIFVSGDELTILAIYVDDILITGGNKE 728          
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.070e-10
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    2 KLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 66
            KL+ +LYGL+QS + W   I+  L+  G+  T SD   Y+  SG ++TIL +Y+DDILI GGN E
Sbjct:  364 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKE 428          
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A2N9HLF0_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HLF0_FAGSY)

HSP 1 Score: 63.2 bits (152), Expect = 5.100e-10
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    3 LKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGN 64
            L+ ALYGL Q+   W+  +   L+E+GF    SDT  ++L SG DIT+L++Y+DDI++ G N
Sbjct:  599 LRKALYGLKQAPRAWYSRLSTRLVELGFKGCKSDTSLFILRSGSDITLLLIYVDDIIVTGSN 660          
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.130e-10
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    2 KLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 66
            KL+ +LYGL+QS + W   I+  L+  G+  T SD   Y+  SG ++TIL +Y+DDILI GGN E
Sbjct: 1143 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKE 1207          
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6H5KP38_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP38_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.160e-10
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    2 KLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 66
            KL+ +LYGL+QS + W   I+  L+  G+  T SD   Y+  SG ++TIL +Y+DDILI GGN E
Sbjct: 1171 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKE 1235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q9SV56_ARATH3.080e-1144.62Uncharacterized protein AT4g28900 n=1 Tax=Arabidop... [more]
A0A6H5L1I6_9PHAE4.310e-1147.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K7J9_9PHAE8.180e-1147.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6L2NXI8_TANCI9.170e-1149.23RNA-directed DNA polymerase, eukaryota, reverse tr... [more]
A0A2U1MFE7_ARTAN1.070e-1044.62Serpin n=1 Tax=Artemisia annua TaxID=35608 RepID=A... [more]
A0A6H5KLN6_9PHAE1.460e-1047.69Peptidase A2 domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JF46_9PHAE5.070e-1047.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HLF0_FAGSY5.100e-1045.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE5.130e-1047.69Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5KP38_9PHAE5.160e-1047.69Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..65
e-value: 1.6E-9
score: 37.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139387contigH-elongata_contig139387:716..916 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139387.2742.1mRNA_H-elongata_contig139387.2742.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig139387 589..916 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig139387.2742.1 ID=prot_H-elongata_contig139387.2742.1|Name=mRNA_H-elongata_contig139387.2742.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MKLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITI
LMLYIDDILIAGGNHE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2