mRNA_H-elongata_contig139387.2742.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139387.2742.1
Unique NamemRNA_H-elongata_contig139387.2742.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: Q9SV56_ARATH (Uncharacterized protein AT4g28900 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SV56_ARATH)

HSP 1 Score: 70.5 bits (171), Expect = 7.150e-12
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 2 
Query:   89 IFKAKSWENHE---IVMKLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 325
            +++   +EN +    V KL  A+YGL Q+   WF +   FLLE GF+ TYSD   ++   G D+  L+LY+DD+L+ G N +
Sbjct: 1002 MYQPPGFENQDRPDYVCKLNKAIYGLKQAPRAWFDKFSTFLLEFGFICTYSDPSLFVFLKGRDLMFLLLYMDDMLLTGNNKK 1083
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BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6H5L1I6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.910e-11
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:  122 IVMKLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 325
            +V KL+ +LYGL+QS + W   I+  L+  G+  T+SD   Y+  SG ++TIL +Y+DDILI GGN E
Sbjct:  136 MVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTHSDPCVYIFVSGDELTILAIYVDDILITGGNKE 203
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BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6H5K7J9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.460e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:  122 IVMKLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 325
            +V KL+ +LYGL+QS + W   I+  L+  G+  T SD   Y+  SG ++TIL +Y+DDILI GGN E
Sbjct:   43 MVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILTIYVDDILITGGNKE 110
[Close]
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A2N9HLF0_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HLF0_FAGSY)

HSP 1 Score: 67.8 bits (164), Expect = 6.200e-11
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 2 
Query:   92 FKAKSWENHEIVMKLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGN 319
            F   S+ NH  V  L+ ALYGL Q+   W+  +   L+E+GF    SDT  ++L SG DIT+L++Y+DDI++ G N
Sbjct:  587 FVHSSFPNH--VCHLRKALYGLKQAPRAWYSRLSTRLVELGFKGCKSDTSLFILRSGSDITLLLIYVDDIIVTGSN 660
[Close]
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6H5KLN6_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 8.440e-11
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:  122 IVMKLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 325
            +V KL+ +LYGL+QS + W   I+  L+  G+  T+SD   Y+  SG ++TIL +Y+DDILI GGN E
Sbjct:  661 MVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTHSDPCVYIFVSGDELTILAIYVDDILITGGNKE 728
[Close]
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A2N9HAD8_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HAD8_FAGSY)

HSP 1 Score: 67.0 bits (162), Expect = 1.010e-10
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 2 
Query:   92 FKAKSWENHEIVMKLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGN 319
            F   S+ NH  V  L+ ALYGL Q+   W+  +   L+E+GF    SDT  ++L SG+DIT+ ++Y+DDI++ G N
Sbjct:    7 FVHSSFPNH--VCHLRKALYGLKQAPRAWYSRLSTRLVELGFKGYKSDTSLFILRSGLDITLFLIYVDDIIVTGSN 80
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BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A2U1MFE7_ARTAN (Serpin n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MFE7_ARTAN)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-10
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 2 
Query:  125 VMKLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 325
            V KLK +LYGL Q++  WF ++   LL +GFV +Y+DT  + L S  + T+L+LY+D I++AG N  
Sbjct:  490 VCKLKKSLYGLKQANRQWFTKLTDLLLTLGFVQSYADTSLFTLTSTRNFTVLLLYVDGIILAGNNQS 556
[Close]
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6L2NXI8_TANCI (RNA-directed DNA polymerase, eukaryota, reverse transcriptase zinc-binding domain protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NXI8_TANCI)

HSP 1 Score: 65.9 bits (159), Expect = 2.320e-10
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 2 
Query:  125 VMKLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 325
            + KL  +LYGL Q++  WF ++  FLL IGF  +Y+DT  + L  G+  T L++Y+DDILIAG NH+
Sbjct:  124 LCKLTKSLYGLKQTNRQWFQKLITFLLTIGFQQSYADTSLFTLTEGLHFTTLLVYVDDILIAG-NHK 189
[Close]
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.880e-10
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:  122 IVMKLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 325
            +V KL+ +LYGL+QS + W   I+  L+  G+  T SD   Y+  SG ++TIL +Y+DDILI GGN E
Sbjct:  361 MVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKE 428
[Close]
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.000e-10
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:  122 IVMKLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITILMLYIDDILIAGGNHE 325
            +V KL+ +LYGL+QS + W   I+  L+  G+  T SD   Y+  SG ++TIL +Y+DDILI GGN E
Sbjct: 1140 MVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKE 1207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139387.2742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q9SV56_ARATH7.150e-1239.02Uncharacterized protein AT4g28900 n=1 Tax=Arabidop... [more]
A0A6H5L1I6_9PHAE1.910e-1147.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K7J9_9PHAE3.460e-1147.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HLF0_FAGSY6.200e-1143.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KLN6_9PHAE8.440e-1147.06Peptidase A2 domain-containing protein n=1 Tax=Ect... [more]
A0A2N9HAD8_FAGSY1.010e-1042.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2U1MFE7_ARTAN1.170e-1044.78Serpin n=1 Tax=Artemisia annua TaxID=35608 RepID=A... [more]
A0A6L2NXI8_TANCI2.320e-1047.76RNA-directed DNA polymerase, eukaryota, reverse tr... [more]
A0A6H5JF46_9PHAE2.880e-1047.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE3.000e-1047.06Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139387contigH-elongata_contig139387:589..916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog50452.A0A087HQI6
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3G9AM@35493,COG2801@1,KOG0017@2759
COG Functional cat.K
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size201
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.5276728-UTR-H-elongata_contig139387:588..7151622929827.5276728-UTR-H-elongata_contig139387:588..715Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139387 589..715 +
1691679174.385278-UTR-H-elongata_contig139387:588..7151691679174.385278-UTR-H-elongata_contig139387:588..715Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139387 589..715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.544934-CDS-H-elongata_contig139387:715..9161622929827.544934-CDS-H-elongata_contig139387:715..916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139387 716..916 +
1691679174.4085486-CDS-H-elongata_contig139387:715..9161691679174.4085486-CDS-H-elongata_contig139387:715..916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139387 716..916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139387.2742.1prot_H-elongata_contig139387.2742.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139387 716..916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139387.2742.1

>prot_H-elongata_contig139387.2742.1 ID=prot_H-elongata_contig139387.2742.1|Name=mRNA_H-elongata_contig139387.2742.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MKLKSALYGLAQSSATWFGEIDGFLLEIGFVTTYSDTYTYLLCSGVDITI
LMLYIDDILIAGGNHE*
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mRNA from alignment at H-elongata_contig139387:589..916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139387.2742.1 ID=mRNA_H-elongata_contig139387.2742.1|Name=mRNA_H-elongata_contig139387.2742.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=328bp|location=Sequence derived from alignment at H-elongata_contig139387:589..916+ (Himanthalia elongata Himel1 dioecious)
TGGGAAGTCCTTCAGCTAGATGTCAAGACAGCCTTCCAACATAGTCAAAT
GTCAGGATCGGCCTACGTAAAGATAGCACGAGGGAGGCATCTTTAAAGCG
AAGAGTTGGGAGAACCACGAAATAGTTATGAAGCTCAAGTCAGCCTTGTA
TGGGCTGGCTCAAAGTTCGGCGACCTGGTTTGGAGAAATCGATGGTTTTC
TCCTAGAGATCGGATTCGTGACAACTTATTCAGACACTTATACCTACCTG
CTTTGCTCCGGGGTCGACATTACAATCCTTATGCTGTACATCGATGACAT
TCTGATCGCTGGTGGGAACCATGAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig139387:589..916+

>mRNA_H-elongata_contig139387.2742.1 ID=mRNA_H-elongata_contig139387.2742.1|Name=mRNA_H-elongata_contig139387.2742.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig139387:589..916+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCTCAAGTCAGCCTTGTATGGGCTGGCTCAAAGTTCGGCGACCTG
GTTTGGAGAAATCGATGGTTTTCTCCTAGAGATCGGATTCGTGACAACTT
ATTCAGACACTTATACCTACCTGCTTTGCTCCGGGGTCGACATTACAATC
CTTATGCTGTACATCGATGACATTCTGATCGCTGGTGGGAACCATGAATA
AATGAAGCTCAAGTCAGCCTTGTATGGGCTGGCTCAAAGTTCGGCGACCT
GGTTTGGAGAAATCGATGGTTTTCTCCTAGAGATCGGATTCGTGACAACT
TATTCAGACACTTATACCTACCTGCTTTGCTCCGGGGTCGACATTACAAT
CCTTATGCTGTACATCGATGACATTCTGATCGCTGGTGGGAACCATGAAT
AA
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