prot_H-elongata_contig139270.2740.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig139270.2740.1
Unique Nameprot_H-elongata_contig139270.2740.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length48
Homology
BLAST of mRNA_H-elongata_contig139270.2740.1 vs. uniprot
Match: D8LD49_ECTSI (DNA polymerase epsilon subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD49_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.680e-11
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 SQVGSSDLRWLLGMLIQAEEGKYFLEDIMTRIPIDLSKA 39
            S VGS+DLRWLLGML Q EEGKYFLED +TR+P+DLS A
Sbjct:  165 SLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSNA 203          
BLAST of mRNA_H-elongata_contig139270.2740.1 vs. uniprot
Match: A0A7S4I565_9STRA (DNA polymerase epsilon subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I565_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.350e-6
Identity = 21/46 (45.65%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    1 SQVGSSDLRWLLGMLIQAEEGKYFLEDIMTRIPIDLSKAVGLLEHY 46
            S +G S L++LLGM++Q EEG+Y+LED   ++P+DL+ A  L + +
Sbjct:  181 SLLGQSGLKFLLGMIVQVEEGRYYLEDTTAQVPMDLTGAEILTDGF 226          
BLAST of mRNA_H-elongata_contig139270.2740.1 vs. uniprot
Match: A0A6V0YVC1_9STRA (DNA polymerase epsilon subunit n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V0YVC1_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.490e-5
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    1 SQVGSSDLRWLLGMLIQAEEGKYFLEDIMTRIPIDLSKAVGLLEHY 46
            S +G S  R+LLGM++Q EEGKY+LED   ++P++ S+A  L + +
Sbjct:  187 SLLGRSGRRFLLGMIVQVEEGKYYLEDHTAQVPLNFSEASLLTDGF 232          
BLAST of mRNA_H-elongata_contig139270.2740.1 vs. uniprot
Match: D8TGB5_SELML (DNA polymerase epsilon subunit n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TGB5_SELML)

HSP 1 Score: 47.8 bits (112), Expect = 6.140e-5
Identity = 19/41 (46.34%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 SQVGSSDLRWLLGMLIQAEEGKYFLEDIMTRIPIDLSKAVG 41
            S +G    RW++G++ Q E+G+Y+LED+   IPIDLS+A+ 
Sbjct:  163 SLLGCIGRRWVMGIVSQLEDGRYYLEDLSATIPIDLSQAIS 203          
BLAST of mRNA_H-elongata_contig139270.2740.1 vs. uniprot
Match: A0A7S1GD26_9STRA (DNA polymerase II subunit 2 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD26_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.400e-5
Identity = 20/39 (51.28%), Postives = 31/39 (79.49%), Query Frame = 0
Query:    1 SQVGSSDLRWLLGMLIQAEEGKYFLEDIMTRIPIDLSKA 39
            S +G++  +++LGML+Q EEG+Y +ED  +R+PIDLS A
Sbjct:  207 SLLGTTGTKYVLGMLVQPEEGRYCIEDQSSRVPIDLSAA 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139270.2740.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LD49_ECTSI4.680e-1176.92DNA polymerase epsilon subunit n=1 Tax=Ectocarpus ... [more]
A0A7S4I565_9STRA9.350e-645.65DNA polymerase epsilon subunit n=1 Tax=Odontella a... [more]
A0A6V0YVC1_9STRA4.490e-545.65DNA polymerase epsilon subunit n=1 Tax=Skeletonema... [more]
D8TGB5_SELML6.140e-546.34DNA polymerase epsilon subunit n=6 Tax=Selaginella... [more]
A0A7S1GD26_9STRA8.400e-551.28DNA polymerase II subunit 2 (Fragment) n=1 Tax=Bic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139270contigH-elongata_contig139270:1418..1561 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139270.2740.1mRNA_H-elongata_contig139270.2740.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig139270 1418..1561 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig139270.2740.1 ID=prot_H-elongata_contig139270.2740.1|Name=mRNA_H-elongata_contig139270.2740.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
SQVGSSDLRWLLGMLIQAEEGKYFLEDIMTRIPIDLSKAVGLLEHYR*
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