mRNA_H-elongata_contig139270.2740.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139270.2740.1
Unique NamemRNA_H-elongata_contig139270.2740.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139270.2740.1 vs. uniprot
Match: D8LD49_ECTSI (DNA polymerase epsilon subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD49_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.680e-11
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 SQVGSSDLRWLLGMLIQAEEGKYFLEDIMTRIPIDLSKA 117
            S VGS+DLRWLLGML Q EEGKYFLED +TR+P+DLS A
Sbjct:  165 SLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSNA 203
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BLAST of mRNA_H-elongata_contig139270.2740.1 vs. uniprot
Match: A0A7S4I565_9STRA (DNA polymerase epsilon subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I565_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.350e-6
Identity = 21/46 (45.65%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 SQVGSSDLRWLLGMLIQAEEGKYFLEDIMTRIPIDLSKAVGLLEHY 138
            S +G S L++LLGM++Q EEG+Y+LED   ++P+DL+ A  L + +
Sbjct:  181 SLLGQSGLKFLLGMIVQVEEGRYYLEDTTAQVPMDLTGAEILTDGF 226
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BLAST of mRNA_H-elongata_contig139270.2740.1 vs. uniprot
Match: A0A6V0YVC1_9STRA (DNA polymerase epsilon subunit n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V0YVC1_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.490e-5
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 SQVGSSDLRWLLGMLIQAEEGKYFLEDIMTRIPIDLSKAVGLLEHY 138
            S +G S  R+LLGM++Q EEGKY+LED   ++P++ S+A  L + +
Sbjct:  187 SLLGRSGRRFLLGMIVQVEEGKYYLEDHTAQVPLNFSEASLLTDGF 232
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BLAST of mRNA_H-elongata_contig139270.2740.1 vs. uniprot
Match: D8TGB5_SELML (DNA polymerase epsilon subunit n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TGB5_SELML)

HSP 1 Score: 47.8 bits (112), Expect = 6.140e-5
Identity = 19/41 (46.34%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 SQVGSSDLRWLLGMLIQAEEGKYFLEDIMTRIPIDLSKAVG 123
            S +G    RW++G++ Q E+G+Y+LED+   IPIDLS+A+ 
Sbjct:  163 SLLGCIGRRWVMGIVSQLEDGRYYLEDLSATIPIDLSQAIS 203
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BLAST of mRNA_H-elongata_contig139270.2740.1 vs. uniprot
Match: A0A7S1GD26_9STRA (DNA polymerase II subunit 2 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD26_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.400e-5
Identity = 20/39 (51.28%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 SQVGSSDLRWLLGMLIQAEEGKYFLEDIMTRIPIDLSKA 117
            S +G++  +++LGML+Q EEG+Y +ED  +R+PIDLS A
Sbjct:  207 SLLGTTGTKYVLGMLVQPEEGRYCIEDQSSRVPIDLSAA 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139270.2740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LD49_ECTSI4.680e-1176.92DNA polymerase epsilon subunit n=1 Tax=Ectocarpus ... [more]
A0A7S4I565_9STRA9.350e-645.65DNA polymerase epsilon subunit n=1 Tax=Odontella a... [more]
A0A6V0YVC1_9STRA4.490e-545.65DNA polymerase epsilon subunit n=1 Tax=Skeletonema... [more]
D8TGB5_SELML6.140e-546.34DNA polymerase epsilon subunit n=6 Tax=Selaginella... [more]
A0A7S1GD26_9STRA8.400e-551.28DNA polymerase II subunit 2 (Fragment) n=1 Tax=Bic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139270contigH-elongata_contig139270:1418..1561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue7.9e-09
Seed eggNOG ortholog2880.D8LD49
Preferred namePOLE2
KEGG rclassRC00005,RC02795
KEGG koko:K02325,ko:K10777
KEGG ReactionR00375,R00376,R00377,R00378,R00381
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03450,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03450,map05166
KEGG ModuleM00263
GOsGO:0000003,GO:0000082,GO:0000228,GO:0000278,GO:0000731,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006281,GO:0006301,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0008622,GO:0009058,GO:0009059,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010154,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019985,GO:0022402,GO:0022414,GO:0031261,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032875,GO:0032877,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034401,GO:0034641,GO:0034645,GO:0034654,GO:0040029,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045005,GO:0045740,GO:0045787,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051302,GO:0051716,GO:0051726,GO:0051781,GO:0060255,GO:0061458,GO:0061695,GO:0065007,GO:0070013,GO:0070182,GO:0070828,GO:0070868,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090068,GO:0090304,GO:0090329,GO:0097549,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902292,GO:1902315,GO:1902494,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1990234,GO:2000105,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.error-prone translesion synthesis
EggNOG OGsKOG3818@1,KOG3818@2759
EC2.7.7.7,6.5.1.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.05272-CDS-H-elongata_contig139270:1417..15611622929827.05272-CDS-H-elongata_contig139270:1417..1561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139270 1418..1561 -
1691679174.3101318-CDS-H-elongata_contig139270:1417..15611691679174.3101318-CDS-H-elongata_contig139270:1417..1561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139270 1418..1561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139270.2740.1prot_H-elongata_contig139270.2740.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139270 1418..1561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139270.2740.1

>prot_H-elongata_contig139270.2740.1 ID=prot_H-elongata_contig139270.2740.1|Name=mRNA_H-elongata_contig139270.2740.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
SQVGSSDLRWLLGMLIQAEEGKYFLEDIMTRIPIDLSKAVGLLEHYR*
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mRNA from alignment at H-elongata_contig139270:1418..1561-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139270.2740.1 ID=mRNA_H-elongata_contig139270.2740.1|Name=mRNA_H-elongata_contig139270.2740.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig139270:1418..1561- (Himanthalia elongata Himel1 dioecious)
TCGCAGGTGGGAAGCAGCGACCTCCGGTGGCTGTTGGGCATGCTGATACA
GGCTGAAGAGGGCAAGTATTTCCTGGAGGATATCATGACGAGGATTCCCA
TCGATCTTTCCAAGGCGGTAGGGTTACTTGAACACTATCGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig139270:1418..1561-

>mRNA_H-elongata_contig139270.2740.1 ID=mRNA_H-elongata_contig139270.2740.1|Name=mRNA_H-elongata_contig139270.2740.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig139270:1418..1561- (Himanthalia elongata Himel1 dioecious)
TCGCAGGTGGGAAGCAGCGACCTCCGGTGGCTGTTGGGCATGCTGATACA
GGCTGAAGAGGGCAAGTATTTCCTGGAGGATATCATGACGAGGATTCCCA
TCGATCTTTCCAAGGCGGTAGGGTTACTTGAACACTATCGTTAATCGCAG
GTGGGAAGCAGCGACCTCCGGTGGCTGTTGGGCATGCTGATACAGGCTGA
AGAGGGCAAGTATTTCCTGGAGGATATCATGACGAGGATTCCCATCGATC
TTTCCAAGGCGGTAGGGTTACTTGAACACTATCGTTAA
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