mRNA_H-elongata_contig13926.2739.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13926.2739.1
Unique NamemRNA_H-elongata_contig13926.2739.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13926.2739.1 vs. uniprot
Match: D8LBQ4_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBQ4_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.510e-42
Identity = 85/140 (60.71%), Postives = 98/140 (70.00%), Query Frame = 1
Query:   25 KKIIFNGE-KHMRPVLGDVVRIHYTCALQ--------------------SGIGVRGIDGG-ESILIESSRSDRRRPLEFVVGSGQVVKGIDLGVRTMLYGERAKISVSPSYGYGDKGCPPIIPPGASLVFDVNLLDFWPR 378
            K+IIF GE K  RP +GDVVRIHYTCALQ                    SG G  G DGG ++ ++ESSR  RRRPLEFVVG+GQVVKGID  +R ML+GERA++ V+  YGYGDKG PP IPP A+LVFDVNLLDFWPR
Sbjct:  381 KEIIFEGEEKRGRPDIGDVVRIHYTCALQESGGSGSGRSSRRSGGSHAVSGYGSSGNDGGGDAGVVESSRKHRRRPLEFVVGAGQVVKGIDRSIRQMLHGERARVFVTALYGYGDKGHPPTIPPRAALVFDVNLLDFWPR 520          
BLAST of mRNA_H-elongata_contig13926.2739.1 vs. uniprot
Match: A0A836CB63_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB63_9STRA)

HSP 1 Score: 124 bits (311), Expect = 5.260e-31
Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   25 KKIIFNGEKHMRPVLGDVVRIHYTCALQSGIGVRGIDGGESILIESSRSDRRRPLEFVVGSGQVVKGIDLGVRTMLYGERAKISVSPSYGYGDKGCPPIIPPGASLVFDVNLLDFWPR 378
            K+++F G+   RP  GDVV  HYTC L+        DGG   ++ES+R  RR   EFV+G+G V++G+D GV  M +GERA+I+VS  Y YG++G PPIIPPGA+LVFDVNL+ FWPR
Sbjct:  321 KEVMFAGDADDRPEDGDVV--HYTCTLR--------DGGA--VVESTRKTRRCAFEFVLGAGAVIRGLDRGVARMAFGERARITVSAEYAYGERGFPPIIPPGAALVFDVNLIRFWPR 426          
BLAST of mRNA_H-elongata_contig13926.2739.1 vs. uniprot
Match: A0A7S3US58_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3US58_HETAK)

HSP 1 Score: 102 bits (254), Expect = 4.040e-24
Identity = 52/122 (42.62%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   13 LSQIKKIIFNGEKHMRPVLGDVVRIHYTCALQSGIGVRGIDGGESILIESSRSDRRRPLEFVVGSGQVVKGIDLGVRTMLYGERAKISVSPSYGYGDKGCPPIIPPGASLVFDVNLLDFWPR 378
            L+  K++I +G+    P +GDVVR+ +  +L        +DG +   I+S++  R+RP EFV+G GQV+KG +  V  M  GER+K ++S  Y YG++G  P IPPG+ LVFD  LL FW R
Sbjct:  117 LNIFKEMIHHGDNENFPYIGDVVRLDFEVSL--------LDGTK---IDSTKHKRKRPFEFVIGEGQVIKGFERAVAGMSLGERSKFTISAEYAYGEEGMIPNIPPGSKLVFDATLLAFWAR 227          
BLAST of mRNA_H-elongata_contig13926.2739.1 vs. uniprot
Match: UPI001BB1C7EA (peptidyl-prolyl cis-trans isomerase Fkbp12-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1C7EA)

HSP 1 Score: 93.6 bits (231), Expect = 2.410e-22
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   58 RPVLGDVVRIHYTCALQSGIGVRGIDGGESILIESSRSDRRRPLEFVVGSGQVVKGIDLGVRTMLYGERAKISVSPSYGYGDKGCPPIIPPGASLVFDVNLLDFW 372
            +P  G  V++HYT  L +G              +SSR DR +P EF +G GQV+KG D GV  M  GERA ++ SP Y YG KG PP+IPP ++LVFDV LL+F+
Sbjct:   15 KPQSGQTVQVHYTGTLTNGN-----------KFDSSR-DRGKPFEFKLGQGQVIKGWDEGVAQMSKGERATLTCSPDYAYGAKGYPPVIPPNSTLVFDVELLNFF 107          
BLAST of mRNA_H-elongata_contig13926.2739.1 vs. uniprot
Match: D8M9W0_BLAHO (Peptidylprolyl isomerase n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M9W0_BLAHO)

HSP 1 Score: 99.8 bits (247), Expect = 5.690e-22
Identity = 54/113 (47.79%), Postives = 73/113 (64.60%), Query Frame = 1
Query:   25 KKIIFNGEKHMRPVLGDVVRIHYTCALQSGIGVRGIDGGESILIESSRSDRRRPLEFVVGSGQVVKGIDLGVRTMLYGERAKISVSPSYGYGDKGCPPIIPPGASLVFDVNLL 363
            K++I  G+    P  GD++ +HYT  L SG            + +SSR+ R RP +FV+G GQV+KG D GV TM  GERAK++++P YGYG +G P +IPP A+LVFDV LL
Sbjct:  412 KEVIKAGDGKNFPKTGDMLTMHYTGTLTSGK-----------VFDSSRT-RGRPFQFVIGIGQVIKGWDEGVMTMSLGERAKLTLTPDYGYGARGVPGVIPPNATLVFDVELL 512          
BLAST of mRNA_H-elongata_contig13926.2739.1 vs. uniprot
Match: A0A0R3TWC6_RODNA (Peptidylprolyl isomerase n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3TWC6_RODNA)

HSP 1 Score: 92.4 bits (228), Expect = 7.060e-22
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   28 KIIFNGEKHMRPVLGDVVRIHYTCALQSGIGVRGIDGGESILIESSRSDRRRPLEFVVGSGQVVKGIDLGVRTMLYGERAKISVSPSYGYGDKGCPPIIPPGASLVFDVNLLDF 369
            ++I  G +   P  G  V++HYT  L  G              +SSR DR +P EF +G GQV++G D GV  M  GER+K+++SP YGYG  G   +IPP A+L+FDV L+ F
Sbjct:    6 EVIKEGNQSDYPKKGQTVKVHYTGTLTDGT-----------KFDSSR-DRGKPFEFKIGCGQVIRGWDEGVAKMSLGERSKLTISPDYGYGSSGAGGVIPPNATLIFDVELISF 107          
BLAST of mRNA_H-elongata_contig13926.2739.1 vs. uniprot
Match: A0A7S1SIP0_9CHLO (Peptidylprolyl isomerase n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SIP0_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 2.080e-21
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   28 KIIFNGEKHMRPVLGDVVRIHYTCALQSGIGVRGIDGGESILIESSRSDRRRPLEFVVGSGQVVKGIDLGVRTMLYGERAKISVSPSYGYGDKGCPPIIPPGASLVFDVNLL 363
            +++  G    +P  G+VV  HYT  L+ G            + +SS S R +PL F++G G V+KG D G+  M  G +AK++ SP YGYGD+G PP IPPGA L+FDV LL
Sbjct:    6 EVVEAGGGTRKPKHGEVVHCHYTGRLEDGT-----------VFDSSVS-RGKPLTFLIGIGAVIKGWDEGIAQMSLGSKAKLTCSPDYGYGDEGAPPAIPPGAVLIFDVELL 105          
BLAST of mRNA_H-elongata_contig13926.2739.1 vs. uniprot
Match: J3LCZ0_ORYBR (Peptidylprolyl isomerase n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LCZ0_ORYBR)

HSP 1 Score: 97.8 bits (242), Expect = 3.310e-21
Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   25 KKIIFNGEKHMRPVLGDVVRIHYTCALQSGIGVRGIDGGESILIESSRSDRRRPLEFVVGSGQVVKGIDLGVRTMLYGERAKISVSPSYGYGDKGCPPIIPPGASLVFDVNLLDF 369
            KK++  GE ++RP  GD V++HYT  L  G              +SSR DR  P +F +G GQV+KG DLG++TM  GE A  ++ P   YG+ G PP+IPP A+L FDV L+ +
Sbjct:   86 KKLVREGEGYVRPDSGDEVQVHYTGTLMDGT-----------KFDSSR-DRDAPFKFTLGQGQVIKGWDLGIKTMKKGENAIFTIPPELAYGEDGSPPVIPPNATLQFDVELISW 188          
BLAST of mRNA_H-elongata_contig13926.2739.1 vs. uniprot
Match: A0A2P6TH41_CHLSO (Peptidylprolyl isomerase n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TH41_CHLSO)

HSP 1 Score: 97.4 bits (241), Expect = 4.400e-21
Identity = 53/116 (45.69%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   22 IKKIIFNGEKHMRPVLGDVVRIHYTCALQSGIGVRGIDGGESILIESSRSDRRRPLEFVVGSGQVVKGIDLGVRTMLYGERAKISVSPSYGYGDKGCPPIIPPGASLVFDVNLLDF 369
            +K+I+  G     P  GD VR+HYT  L+ G              +SSR DR  P EF +G GQV+KG DLGV TM  GE +K+++   YGYG  G PP IP GA+L+F+V LLD+
Sbjct:   50 VKEIVKPGTGWEEPESGDKVRVHYTGTLEDGT-----------KFDSSR-DRNEPFEFPLGLGQVIKGWDLGVATMKKGEISKLTIKSDYGYGASGSPPTIPGGATLIFEVELLDW 153          
BLAST of mRNA_H-elongata_contig13926.2739.1 vs. uniprot
Match: A0A5A8E9C9_CAFRO (Peptidylprolyl isomerase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E9C9_CAFRO)

HSP 1 Score: 91.3 bits (225), Expect = 4.770e-21
Identity = 48/109 (44.04%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   43 GEKHMRPVLGDVVRIHYTCALQSGIGVRGIDGGESILIESSRSDRRRPLEFVVGSGQVVKGIDLGVRTMLYGERAKISVSPSYGYGDKGCPPIIPPGASLVFDVNLLDF 369
            G+    P  G  VR+HY   ++          GE++ I+SSR DR+ PLEF VG GQV+ G+D+ ++ M  G+RAK+++  +  YG +G PPIIPPGA+LV DV L+ F
Sbjct:   42 GDATSYPKDGMTVRVHYETMIE----------GENLKIDSSR-DRKVPLEFRVGLGQVIPGLDVAMKRMSRGQRAKLTIPAAMAYGARGYPPIIPPGAALVMDVELISF 139          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13926.2739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBQ4_ECTSI1.510e-4260.71Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CB63_9STRA5.260e-3153.39Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A7S3US58_HETAK4.040e-2442.62Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
UPI001BB1C7EA2.410e-2247.62peptidyl-prolyl cis-trans isomerase Fkbp12-like n=... [more]
D8M9W0_BLAHO5.690e-2247.79Peptidylprolyl isomerase n=1 Tax=Blastocystis homi... [more]
A0A0R3TWC6_RODNA7.060e-2242.11Peptidylprolyl isomerase n=1 Tax=Rodentolepis nana... [more]
A0A7S1SIP0_9CHLO2.080e-2143.75Peptidylprolyl isomerase n=1 Tax=Tetraselmis chuii... [more]
J3LCZ0_ORYBR3.310e-2143.48Peptidylprolyl isomerase n=1 Tax=Oryza brachyantha... [more]
A0A2P6TH41_CHLSO4.400e-2145.69Peptidylprolyl isomerase n=2 Tax=Chlorella sorokin... [more]
A0A5A8E9C9_CAFRO4.770e-2144.04Peptidylprolyl isomerase n=2 Tax=Cafeteria roenber... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13926contigH-elongata_contig13926:4955..5332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue3.1e-36
Seed eggNOG ortholog2880.D8LBQ4
KEGG koko:K09572
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.999225-CDS-H-elongata_contig13926:4954..53321622929826.999225-CDS-H-elongata_contig13926:4954..5332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13926 4955..5332 -
1691679174.2988274-CDS-H-elongata_contig13926:4954..53321691679174.2988274-CDS-H-elongata_contig13926:4954..5332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13926 4955..5332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13926.2739.1prot_H-elongata_contig13926.2739.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13926 4955..5332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13926.2739.1

>prot_H-elongata_contig13926.2739.1 ID=prot_H-elongata_contig13926.2739.1|Name=mRNA_H-elongata_contig13926.2739.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
EWIPLSQIKKIIFNGEKHMRPVLGDVVRIHYTCALQSGIGVRGIDGGESI
LIESSRSDRRRPLEFVVGSGQVVKGIDLGVRTMLYGERAKISVSPSYGYG
DKGCPPIIPPGASLVFDVNLLDFWPR
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mRNA from alignment at H-elongata_contig13926:4955..5332-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13926.2739.1 ID=mRNA_H-elongata_contig13926.2739.1|Name=mRNA_H-elongata_contig13926.2739.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=378bp|location=Sequence derived from alignment at H-elongata_contig13926:4955..5332- (Himanthalia elongata Himel1 dioecious)
GAATGGATCCCCCTCTCTCAAATCAAAAAGATAATTTTTAACGGAGAGAA GCACATGCGACCGGTACTCGGCGACGTCGTCCGCATCCACTACACCTGTG CCCTGCAGTCGGGGATTGGGGTACGCGGTATCGACGGTGGCGAAAGCATT CTAATCGAGAGCTCCCGCAGTGATAGGCGGCGGCCCCTCGAGTTCGTTGT GGGCTCAGGGCAGGTTGTCAAGGGGATAGACCTAGGTGTGAGGACCATGC TCTACGGAGAACGGGCGAAGATTTCAGTGTCGCCATCCTACGGATACGGC GACAAGGGGTGTCCGCCTATCATTCCGCCCGGAGCTTCCCTTGTGTTTGA TGTTAATCTTCTGGACTTCTGGCCGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig13926:4955..5332-

>mRNA_H-elongata_contig13926.2739.1 ID=mRNA_H-elongata_contig13926.2739.1|Name=mRNA_H-elongata_contig13926.2739.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig13926:4955..5332- (Himanthalia elongata Himel1 dioecious)
GAATGGATCCCCCTCTCTCAAATCAAAAAGATAATTTTTAACGGAGAGAA
GCACATGCGACCGGTACTCGGCGACGTCGTCCGCATCCACTACACCTGTG
CCCTGCAGTCGGGGATTGGGGTACGCGGTATCGACGGTGGCGAAAGCATT
CTAATCGAGAGCTCCCGCAGTGATAGGCGGCGGCCCCTCGAGTTCGTTGT
GGGCTCAGGGCAGGTTGTCAAGGGGATAGACCTAGGTGTGAGGACCATGC
TCTACGGAGAACGGGCGAAGATTTCAGTGTCGCCATCCTACGGATACGGC
GACAAGGGGTGTCCGCCTATCATTCCGCCCGGAGCTTCCCTTGTGTTTGA
TGTTAATCTTCTGGACTTCTGGCCGCGTGAATGGATCCCCCTCTCTCAAA
TCAAAAAGATAATTTTTAACGGAGAGAAGCACATGCGACCGGTACTCGGC
GACGTCGTCCGCATCCACTACACCTGTGCCCTGCAGTCGGGGATTGGGGT
ACGCGGTATCGACGGTGGCGAAAGCATTCTAATCGAGAGCTCCCGCAGTG
ATAGGCGGCGGCCCCTCGAGTTCGTTGTGGGCTCAGGGCAGGTTGTCAAG
GGGATAGACCTAGGTGTGAGGACCATGCTCTACGGAGAACGGGCGAAGAT
TTCAGTGTCGCCATCCTACGGATACGGCGACAAGGGGTGTCCGCCTATCA
TTCCGCCCGGAGCTTCCCTTGTGTTTGATGTTAATCTTCTGGACTTCTGG
CCGCGT
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