mRNA_H-elongata_contig139257.2737.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139257.2737.1
Unique NamemRNA_H-elongata_contig139257.2737.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139257.2737.1 vs. uniprot
Match: D7FZY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.120e-33
Identity = 100/272 (36.76%), Postives = 133/272 (48.90%), Query Frame = 1 
Query:    4 LPKNQTFELTFEQPEKFGYSPSALTLGVSIDGGSRRLGRKGGERGSSLPPTFNDLPPASFPDLFRHSTAPVISGSPPAAGD-EKLGFFVQWPLKAASSTTAIGDRVGGKSQFMKNSGRSHQRTFTDYRCDSLGSAAEWDNTLEGDLDLSLAHKPRAPSGSGSGWQLWPRSSS--TKTPPRPXXXXXXXXXISPPPRNGNQTGPSVDGLRGGGDTESAKGTKGLKAEEEGLWAVGRAWKALRAHRDDDALQATIRAAAAVTSIVSKHLRKRSQ 810
            LP++Q F LT E+P KFGYSP     G                  S +P   + LPPA+ PDL R  TAP ++    + G  E  G F +WP KA  +  + GD         KN G     T+TD R DSLGSAAEWD TLEG+LDLSLA + + P   G   + +P ++   + T PRP             P    +      G RGGG    A   K  ++      AVG AW+A +A+   D+L AT+ AA   TSI  +H+RKR++
Sbjct:  863 LPEDQAFNLTLEEPTKFGYSPGLAVAGXXXXXXXXXXXXXASNIASPIP-DGDWLPPAA-PDLLRRQTAPAMTPPSSSLGHVEAGGAFTRWPPKAPPAHASDGDGAEESGDGAKNRGHQRSGTYTDLRADSLGSAAEWDRTLEGELDLSLAQRNQTPVMVGPSLKKFPVAAGNVSGTVPRPKARRGGKSLPGRVPSKPAE----ASGCRGGGGAAGAIKIKSPRS------AVGIAWEAFKANGGGDSLPATLSAAMTATSIAVEHVRKRTR 1122
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BLAST of mRNA_H-elongata_contig139257.2737.1 vs. uniprot
Match: A0A6H5KL36_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.720e-28
Identity = 106/279 (37.99%), Postives = 143/279 (51.25%), Query Frame = 1 
Query:    4 LPKNQTFELTFEQPEKFGYSPSALTLGVSIDGGSRRLGRKGGERG----SSLPPTFNDLPPASFPDLFRHSTAPVISGSPPAAGDEKLG-FFVQWPLKAA---SSTTAIGDRVGGKSQFMKNSGRSHQRTFTDYRCDSLGSAAEWDNTLEGDLDLSLAHKPRAPSGSGSGWQLWPRSSS--TKTPPRPXXXXXXXXXISPPPRNGNQTGPSVDGLRGGGDTESAKGTKGLKAEEEGLWAVGRAWKALRAHRDDDALQATIRAAAAVTSIVSKHLRKRSQ 810
            LP++Q F+LT E+P KFGYSP     GV++ GGS               +S  P  N LPPA+ P L R  TAP  +    + G   +G  F  WP KA    +S  A+ +  G  +   KN G     T+TD R DSLGSAAEWD TLEG+LDLSLA + + P   G   + +  S+   + T PRP          S P R  ++   + D  RGGG   +A G   +K+      AV  AW+A +A+   D+L AT+ AA   TSI  KH+ KR++
Sbjct:  727 LPEDQAFKLTLEEPTKFGYSP-----GVAVAGGSXXXXXXXXXXXXXXIASPIPDGNWLPPAA-PALLRRQTAPARTPPSSSLGHMNVGGAFTSWPPKATPAHASDEAVAEESGVGA---KNRGHQRSGTYTDLRADSLGSAAEWDWTLEGELDLSLAQRSQTPVMVGPSLKKFTVSAGNVSGTVPRPQARRDGK---SLPGRVPSKPAEASD-CRGGG---AAAGATKIKSPHS---AVRIAWEAFKANGGGDSLPATLSAAMTATSIAVKHVSKRTR 986
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139257.2737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZY2_ECTSI1.120e-3336.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL36_9PHAE1.720e-2837.99Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139257contigH-elongata_contig139257:366..1531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size810
Cds size810
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.7833645-CDS-H-elongata_contig139257:365..7451622929826.7833645-CDS-H-elongata_contig139257:365..745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139257 366..745 -
1691679174.2482455-CDS-H-elongata_contig139257:365..7451691679174.2482455-CDS-H-elongata_contig139257:365..745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139257 366..745 -
1622929826.803448-CDS-H-elongata_contig139257:1101..15311622929826.803448-CDS-H-elongata_contig139257:1101..1531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139257 1102..1531 -
1691679174.2556665-CDS-H-elongata_contig139257:1101..15311691679174.2556665-CDS-H-elongata_contig139257:1101..1531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139257 1102..1531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139257.2737.1prot_H-elongata_contig139257.2737.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139257 366..1531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139257.2737.1

>prot_H-elongata_contig139257.2737.1 ID=prot_H-elongata_contig139257.2737.1|Name=mRNA_H-elongata_contig139257.2737.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
DLPKNQTFELTFEQPEKFGYSPSALTLGVSIDGGSRRLGRKGGERGSSLP
PTFNDLPPASFPDLFRHSTAPVISGSPPAAGDEKLGFFVQWPLKAASSTT
AIGDRVGGKSQFMKNSGRSHQRTFTDYRCDSLGSAAEWDNTLEGDLDLSL
AHKPRAPSGSGSGWQLWPRSSSTKTPPRPSAAAASAALISPPPRNGNQTG
PSVDGLRGGGDTESAKGTKGLKAEEEGLWAVGRAWKALRAHRDDDALQAT
IRAAAAVTSIVSKHLRKRSQ
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mRNA from alignment at H-elongata_contig139257:366..1531-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139257.2737.1 ID=mRNA_H-elongata_contig139257.2737.1|Name=mRNA_H-elongata_contig139257.2737.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1166bp|location=Sequence derived from alignment at H-elongata_contig139257:366..1531- (Himanthalia elongata Himel1 dioecious)
GACCTACCTAAAAACCAAACCTTCGAGCTCACGTTCGAGCAGCCGGAGAA
GTTCGGTTACAGCCCGTCCGCGTTGACGCTGGGAGTTAGTATAGACGGTG
GCAGCCGCCGTTTAGGCAGGAAGGGCGGAGAGCGAGGATCATCGCTGCCT
CCCACATTCAACGACCTTCCCCCGGCGAGCTTTCCCGACCTGTTCCGGCA
TTCCACGGCGCCGGTAATCTCCGGGAGTCCCCCTGCCGCCGGTGACGAGA
AGTTGGGATTCTTCGTGCAATGGCCCCTCAAGGCGGCGTCATCGACTACG
GCGATAGGGGACCGCGTGGGTGGAAAGAGCCAGTTTATGAAGAACAGCGG
TCGGTCCCATCAACGCACCTTCACGGACTACCGATGCGACTCGCTGGGGT
CTGCCGCGGAATGGGACAATACTTTGGAAGGTGGTGGCTCAAGGATTAGA
GATACCCCTGAGGCTGGGGCTGGATTGGCACAAAGGAGGGGGGGAGTGAA
CATGTTTGCCGTTCGAGCAGCTTGTCAAAAGCGCTTGTTTTACGTTTCAT
TTTCCGATATGTTTAGCTTGAGGGTTCCTGCCGAGACCGACAAAACTGTT
GAGCGTCGCGCGCGAATGCTGGCTTGTTCTCGATGATGGAAAATATTTTG
TATAATTACGCTTCTAGAAATACTCTCTTTTTTTCTTTTTTCTTTTTTCT
TCTTTTCCCCAAAAAGTAAAATATTCGAAAAAATAACCAAAAGCAAAAAC
AATCACTAATGAACAGCGCTTGCGAAACCGACGCAGGCGACCTCGACCTC
TCCCTGGCTCACAAGCCGCGAGCTCCCTCTGGGTCCGGCTCCGGGTGGCA
GCTTTGGCCCCGAAGCTCGTCTACCAAGACGCCTCCTCGTCCTTCTGCTG
CTGCGGCTTCAGCTGCACTTATATCTCCCCCCCCAAGAAACGGCAACCAG
ACAGGTCCCTCCGTTGACGGTCTTAGAGGCGGCGGTGATACAGAGAGCGC
TAAGGGTACCAAGGGTCTCAAGGCCGAGGAGGAAGGGCTATGGGCAGTGG
GGCGCGCGTGGAAGGCGTTGAGGGCCCACCGTGACGACGACGCGCTCCAG
GCCACGATTAGAGCGGCGGCCGCGGTCACAAGCATCGTGTCCAAGCACCT
GAGGAAGCGCAGCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig139257:366..1531-

>mRNA_H-elongata_contig139257.2737.1 ID=mRNA_H-elongata_contig139257.2737.1|Name=mRNA_H-elongata_contig139257.2737.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1620bp|location=Sequence derived from alignment at H-elongata_contig139257:366..1531- (Himanthalia elongata Himel1 dioecious)
GACCTACCTAAAAACCAAACCTTCGAGCTCACGTTCGAGCAGCCGGAGAA
GTTCGGTTACAGCCCGTCCGCGTTGACGCTGGGAGTTAGTATAGACGGTG
GCAGCCGCCGTTTAGGCAGGAAGGGCGGAGAGCGAGGATCATCGCTGCCT
CCCACATTCAACGACCTTCCCCCGGCGAGCTTTCCCGACCTGTTCCGGCA
TTCCACGGCGCCGGTAATCTCCGGGAGTCCCCCTGCCGCCGGTGACGAGA
AGTTGGGATTCTTCGTGCAATGGCCCCTCAAGGCGGCGTCATCGACTACG
GCGATAGGGGACCGCGTGGGTGGAAAGAGCCAGTTTATGAAGAACAGCGG
TCGGTCCCATCAACGCACCTTCACGGACTACCGATGCGACTCGCTGGGGT
CTGCCGCGGAATGGGACAATACTTTGGAAGGACCTACCTAAAAACCAAAC
CTTCGAGCTCACGTTCGAGCAGCCGGAGAAGTTCGGTTACAGCCCGTCCG
CGTTGACGCTGGGAGTTAGTATAGACGGTGGCAGCCGCCGTTTAGGCAGG
AAGGGCGGAGAGCGAGGATCATCGCTGCCTCCCACATTCAACGACCTTCC
CCCGGCGAGCTTTCCCGACCTGTTCCGGCATTCCACGGCGCCGGTAATCT
CCGGGAGTCCCCCTGCCGCCGGTGACGAGAAGTTGGGATTCTTCGTGCAA
TGGCCCCTCAAGGCGGCGTCATCGACTACGGCGATAGGGGACCGCGTGGG
TGGAAAGAGCCAGTTTATGAAGAACAGCGGTCGGTCCCATCAACGCACCT
TCACGGACTACCGATGCGACTCGCTGGGGTCTGCCGCGGAATGGGACAAT
ACTTTGGAAGGCGACCTCGACCTCTCCCTGGCTCACAAGCCGCGAGCTCC
CTCTGGGTCCGGCTCCGGGTGGCAGCTTTGGCCCCGAAGCTCGTCTACCA
AGACGCCTCCTCGTCCTTCTGCTGCTGCGGCTTCAGCTGCACTTATATCT
CCCCCCCCAAGAAACGGCAACCAGACAGGTCCCTCCGTTGACGGTCTTAG
AGGCGGCGGTGATACAGAGAGCGCTAAGGGTACCAAGGGTCTCAAGGCCG
AGGAGGAAGGGCTATGGGCAGTGGGGCGCGCGTGGAAGGCGTTGAGGGCC
CACCGTGACGACGACGCGCTCCAGGCCACGATTAGAGCGGCGGCCGCGGT
CACAAGCATCGTGTCCAAGCACCTGAGGAAGCGCAGCCAGGCGACCTCGA
CCTCTCCCTGGCTCACAAGCCGCGAGCTCCCTCTGGGTCCGGCTCCGGGT
GGCAGCTTTGGCCCCGAAGCTCGTCTACCAAGACGCCTCCTCGTCCTTCT
GCTGCTGCGGCTTCAGCTGCACTTATATCTCCCCCCCCAAGAAACGGCAA
CCAGACAGGTCCCTCCGTTGACGGTCTTAGAGGCGGCGGTGATACAGAGA
GCGCTAAGGGTACCAAGGGTCTCAAGGCCGAGGAGGAAGGGCTATGGGCA
GTGGGGCGCGCGTGGAAGGCGTTGAGGGCCCACCGTGACGACGACGCGCT
CCAGGCCACGATTAGAGCGGCGGCCGCGGTCACAAGCATCGTGTCCAAGC
ACCTGAGGAAGCGCAGCCAG
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