mRNA_H-elongata_contig13925.2735.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13925.2735.1
Unique NamemRNA_H-elongata_contig13925.2735.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13925.2735.1 vs. uniprot
Match: D8LQ40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ40_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 6.140e-87
Identity = 155/315 (49.21%), Postives = 202/315 (64.13%), Query Frame = 1 
Query:   22 YEIDYNDMNMGPDILRLLGASEEVIAAKEREISSIK--WEAPKVAGLEHSSAIANFDDVALSGGKKGQTSGTTERIFKTIGSYDGPSGVGHAPPTNTAVLKVKISQAPEAVPKGKESKLPPAPEIGSEDDSSASDTSWDEESVIDGHAWWEDMSDEVDGLNSRISYNLRTAFGLADS-----VQDPAKTDNN--WRPPSSSGLSNSKPLVTLQPVGVGTYKGMEVKYMRGGEGDGDSRGSTNEGNSQEESGDEGWDHTDIPDEDYILEWSTNISPNLSSALENAKSPAQLAEKLSREISWRPPTTYGLGNSAPII 939
            YE+DY  MN+ P+ILR+LGASEEVIAAKE E+S +   W  P   GLEHSSAIA+   VA+ GG      G  ER+FK +GS+D  +    A      VLKVK++ APE VPK +ESKLPP  E    DD  + D SWDE S IDGHAWWE  SD+ +   + +S+NLR A GLA +      +  +  D N  WRPPS +GL NSKPL TL P+ +G  KG+E++Y +   G+G++ G       +E S +EGWD+ D+PDE+Y+L+WST+ISPNL+ A+    S    A  LS E+SW+PP + GL NSAPII
Sbjct:   48 YEVDYASMNVSPEILRMLGASEEVIAAKEAEVSGVTSTWVPPTETGLEHSSAIADSAAVAI-GGSGAPGGGGVERVFKAVGSFDKDAEDAAAAGERAPVLKVKVAHAPEPVPKKRESKLPPKSEDSWSDDDGSED-SWDEASAIDGHAWWESGSDDEELETAAMSHNLRVALGLATAGEVATAETGSGGDGNGDWRPPSFAGLDNSKPLTTLMPLVIGQQKGLEIEYKKK-MGEGEAEGGEGGDGDEEWSEEEGWDYEDVPDEEYLLDWSTSISPNLAKAMGRRASTEHKALALSEELSWKPPMSSGLKNSAPII 359
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BLAST of mRNA_H-elongata_contig13925.2735.1 vs. uniprot
Match: D8LQ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ41_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.390e-25
Identity = 86/238 (36.13%), Postives = 117/238 (49.16%), Query Frame = 1 
Query:    7 EDDEEYEIDYNDMNMGPDILRLLGASEEVIAAKEREISSI--KWEAPKVAGLEHSSAI-ANFDDVALSGGKKGQTSGTTERIFKTIGSYDGPSGVGHAPPTNTAVLKVKISQAPEAVPKGKESKLPPAPEIGSEDDSSASDTSWDEESVIDGHAWWEDMS-DEVDGLNSRISYNLRTAFGLA-DSVQDPAKTD-----NNWRPPSSSGLSNSKPLVTLQPVGVGTYKGMEVKYMRGGE 690
            E+ ++YE+DY  +N  P++LR+LGASE VIAAKE E+S+I   W  P   GLE+S+ I A+   V L  GK    SG   R+ K +G +D  +    A        KV                             S+ D SWDE S  + HAWWE  S DE   + S +S NL+   GL   S  D A  +     N W PPS +GLSNS+ +  L+P+ VG  K  +V+Y   G+
Sbjct:   22 EEGDDYELDYASLNANPELLRMLGASERVIAAKEAEVSAIVSTWAPPPEPGLENSTTIIADSAAVVLGSGKAPCGSGVA-RVSKLVGGFDQDAAAAAATAQEAPGWKV-----------------------------SSKDESWDEASA-NRHAWWESGSEDEEYEMMSAMSPNLQAVLGLRRPSGTDTANAEQGDNKNEWHPPSFAGLSNSRRVTVLRPLVVGHGKMFDVEYRNRGQ 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13925.2735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ40_ECTSI6.140e-8749.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LQ41_ECTSI2.390e-2536.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13925contigH-elongata_contig13925:3117..4440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size939
Cds size939
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13925.2735.1prot_H-elongata_contig13925.2735.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13925 3117..4440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.505785-CDS-H-elongata_contig13925:3116..34171622929826.505785-CDS-H-elongata_contig13925:3116..3417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13925 3117..3417 +
1691679174.1798208-CDS-H-elongata_contig13925:3116..34171691679174.1798208-CDS-H-elongata_contig13925:3116..3417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13925 3117..3417 +
1622929826.5251987-CDS-H-elongata_contig13925:3456..36421622929826.5251987-CDS-H-elongata_contig13925:3456..3642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13925 3457..3642 +
1691679174.1880531-CDS-H-elongata_contig13925:3456..36421691679174.1880531-CDS-H-elongata_contig13925:3456..3642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13925 3457..3642 +
1622929826.54406-CDS-H-elongata_contig13925:3838..41201622929826.54406-CDS-H-elongata_contig13925:3838..4120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13925 3839..4120 +
1691679174.19688-CDS-H-elongata_contig13925:3838..41201691679174.19688-CDS-H-elongata_contig13925:3838..4120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13925 3839..4120 +
1622929826.5556495-CDS-H-elongata_contig13925:4270..44401622929826.5556495-CDS-H-elongata_contig13925:4270..4440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13925 4271..4440 +
1691679174.206383-CDS-H-elongata_contig13925:4270..44401691679174.206383-CDS-H-elongata_contig13925:4270..4440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13925 4271..4440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13925.2735.1

>prot_H-elongata_contig13925.2735.1 ID=prot_H-elongata_contig13925.2735.1|Name=mRNA_H-elongata_contig13925.2735.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp
DGEDDEEYEIDYNDMNMGPDILRLLGASEEVIAAKEREISSIKWEAPKVA
GLEHSSAIANFDDVALSGGKKGQTSGTTERIFKTIGSYDGPSGVGHAPPT
NTAVLKVKISQAPEAVPKGKESKLPPAPEIGSEDDSSASDTSWDEESVID
GHAWWEDMSDEVDGLNSRISYNLRTAFGLADSVQDPAKTDNNWRPPSSSG
LSNSKPLVTLQPVGVGTYKGMEVKYMRGGEGDGDSRGSTNEGNSQEESGD
EGWDHTDIPDEDYILEWSTNISPNLSSALENAKSPAQLAEKLSREISWRP
PTTYGLGNSAPII
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mRNA from alignment at H-elongata_contig13925:3117..4440+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13925.2735.1 ID=mRNA_H-elongata_contig13925.2735.1|Name=mRNA_H-elongata_contig13925.2735.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1324bp|location=Sequence derived from alignment at H-elongata_contig13925:3117..4440+ (Himanthalia elongata Himel1 dioecious)
GATGGCGAGGACGACGAAGAGTACGAGATCGACTACAACGATATGAACAT
GGGTCCGGATATCTTGCGCCTCCTAGGGGCAAGTGAAGAAGTGATTGCAG
CCAAGGAAAGAGAGATATCGTCAATCAAATGGGAGGCGCCGAAGGTGGCA
GGTCTCGAGCACAGTTCCGCCATCGCCAATTTTGATGATGTCGCCCTTTC
GGGAGGGAAGAAAGGGCAGACGTCGGGTACAACGGAGAGAATCTTCAAAA
CGATCGGCAGCTACGATGGCCCATCCGGGGTCGGTCATGCGCCCCCAACA
AGTAATCCTCAGTCTTCCCACGGGGAAGCTCCTACTACAGACACGGCTGT
TCTGAAGGTGAAGATCTCGCAAGCTCCAGAGGCGGTGCCGAAAGGAAAGG
AGTCTAAGCTGCCTCCCGCCCCTGAGATAGGAAGCGAGGATGACTCTTCT
GCGTCTGATACTTCCTGGGACGAAGAATCTGTTATCGATGGCCATGCGTG
GTGGGAGGATATGTCTGACGAGGTGGGTTTCGAGATCTTTTGGCATACAG
TACTTGTGATAGTATCATCGGGTTTTCCCCCCACCCTTGAAGACGCTGCG
AACATAACGCCACCAGGTTCCGGGGGTCGACGTATCGTATTTCGAACATC
ATAATTTACCACCCACACTGCCTCGCCACGGACGGAATCAATCCATCAAT
TCCCTCGACCAGGAGGTGACAGATGGCTTGAACTCGAGAATTTCTTATAA
TCTAAGAACAGCCTTCGGACTGGCGGATTCTGTCCAAGATCCCGCCAAGA
CAGACAACAACTGGCGCCCACCATCATCTTCAGGGCTGAGCAACAGCAAG
CCTCTGGTGACACTTCAGCCGGTCGGCGTGGGAACGTACAAAGGAATGGA
GGTGAAGTATATGAGAGGGGGCGAAGGAGATGGAGATAGTCGAGGGAGCA
CGAACGAGGGTAATAGCCAAGAGGAATCCGGCGACGAAGGATGGGATCAC
ACAGGTGGGAACACGACGAACGCTGTCAGGTTCTTGAAGATGTCTGGAAA
TATTACACCAATTTCCCTCCGAAAGGATATCTACCTTATATACACCCCCA
AGAATACTCTCCTAACCCGTCCGTCTTCTCTGATCCATTGTTTCTTGCCG
ACAGACATACCAGACGAAGATTACATTCTAGAATGGAGCACGAACATTTC
TCCAAACCTCTCGAGCGCGCTAGAAAACGCGAAGTCTCCCGCACAGTTGG
CCGAGAAACTCTCCCGGGAAATTTCTTGGAGGCCTCCGACGACGTACGGT
CTTGGCAACAGCGCTCCGATCATA
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Coding sequence (CDS) from alignment at H-elongata_contig13925:3117..4440+

>mRNA_H-elongata_contig13925.2735.1 ID=mRNA_H-elongata_contig13925.2735.1|Name=mRNA_H-elongata_contig13925.2735.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig13925:3117..4440+ (Himanthalia elongata Himel1 dioecious)
GATGGCGAGGACGACGAAGAGTACGAGATCGACTACAACGATATGAACAT
GGGTCCGGATATCTTGCGCCTCCTAGGGGCAAGTGAAGAAGTGATTGCAG
CCAAGGAAAGAGAGATATCGTCAATCAAATGGGAGGCGCCGAAGGTGGCA
GGTCTCGAGCACAGTTCCGCCATCGCCAATTTTGATGATGTCGCCCTTTC
GGGAGGGAAGAAAGGGCAGACGTCGGGTACAACGGAGAGAATCTTCAAAA
CGATCGGCAGCTACGATGGCCCATCCGGGGTCGGTCATGCGCCCCCAACA
AGATGGCGAGGACGACGAAGAGTACGAGATCGACTACAACGATATGAACA
TGGGTCCGGATATCTTGCGCCTCCTAGGGGCAAGTGAAGAAGTGATTGCA
GCCAAGGAAAGAGAGATATCGTCAATCAAATGGGAGGCGCCGAAGGTGGC
AGGTCTCGAGCACAGTTCCGCCATCGCCAATTTTGATGATGTCGCCCTTT
CGGGAGGGAAGAAAGGGCAGACGTCGGGTACAACGGAGAGAATCTTCAAA
ACGATCGGCAGCTACGATGGCCCATCCGGGGTCGGTCATGCGCCCCCAAC
AAACACGGCTGTTCTGAAGGTGAAGATCTCGCAAGCTCCAGAGGCGGTGC
CGAAAGGAAAGGAGTCTAAGCTGCCTCCCGCCCCTGAGATAGGAAGCGAG
GATGACTCTTCTGCGTCTGATACTTCCTGGGACGAAGAATCTGTTATCGA
TGGCCATGCGTGGTGGGAGGATATGTCTGACGAGGTGGACACGGCTGTTC
TGAAGGTGAAGATCTCGCAAGCTCCAGAGGCGGTGCCGAAAGGAAAGGAG
TCTAAGCTGCCTCCCGCCCCTGAGATAGGAAGCGAGGATGACTCTTCTGC
GTCTGATACTTCCTGGGACGAAGAATCTGTTATCGATGGCCATGCGTGGT
GGGAGGATATGTCTGACGAGGTGGATGGCTTGAACTCGAGAATTTCTTAT
AATCTAAGAACAGCCTTCGGACTGGCGGATTCTGTCCAAGATCCCGCCAA
GACAGACAACAACTGGCGCCCACCATCATCTTCAGGGCTGAGCAACAGCA
AGCCTCTGGTGACACTTCAGCCGGTCGGCGTGGGAACGTACAAAGGAATG
GAGGTGAAGTATATGAGAGGGGGCGAAGGAGATGGAGATAGTCGAGGGAG
CACGAACGAGGGTAATAGCCAAGAGGAATCCGGCGACGAAGGATGGGATC
ACACAGATGGCTTGAACTCGAGAATTTCTTATAATCTAAGAACAGCCTTC
GGACTGGCGGATTCTGTCCAAGATCCCGCCAAGACAGACAACAACTGGCG
CCCACCATCATCTTCAGGGCTGAGCAACAGCAAGCCTCTGGTGACACTTC
AGCCGGTCGGCGTGGGAACGTACAAAGGAATGGAGGTGAAGTATATGAGA
GGGGGCGAAGGAGATGGAGATAGTCGAGGGAGCACGAACGAGGGTAATAG
CCAAGAGGAATCCGGCGACGAAGGATGGGATCACACAGACATACCAGACG
AAGATTACATTCTAGAATGGAGCACGAACATTTCTCCAAACCTCTCGAGC
GCGCTAGAAAACGCGAAGTCTCCCGCACAGTTGGCCGAGAAACTCTCCCG
GGAAATTTCTTGGAGGCCTCCGACGACGTACGGTCTTGGCAACAGCGCTC
CGATCATAACATACCAGACGAAGATTACATTCTAGAATGGAGCACGAACA
TTTCTCCAAACCTCTCGAGCGCGCTAGAAAACGCGAAGTCTCCCGCACAG
TTGGCCGAGAAACTCTCCCGGGAAATTTCTTGGAGGCCTCCGACGACGTA
CGGTCTTGGCAACAGCGCTCCGATCATA
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