mRNA_H-elongata_contig139227.2734.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139227.2734.1
Unique NamemRNA_H-elongata_contig139227.2734.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139227.2734.1 vs. uniprot
Match: D8LL66_ECTSI (FYVE, RhoGEF and PH domain containing 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL66_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.420e-32
Identity = 63/115 (54.78%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    1 LSSHKSRRHHCRQCLKLVCSACSSNTWQLDSSR-RIRGTTDRRAGFKRVCNECYAALNTAREVLVGGDPSTLKSGEHINFEVVVHEVLGGIPARWKHPPPPVPTGTSLTVSGTKT 342
            L +  +R HHCR CLKLVCSACSSN W+L++ R R  G+  RRA FKRVC++CY  L   +EVLVGGD ++L SGEH++FEV+VHE LG   A     PP VP G S    G  T
Sbjct:   15 LFTFTNRGHHCRACLKLVCSACSSNMWKLEAGRSRGYGSAGRRAAFKRVCDKCYGTLVATKEVLVGGDAASLDSGEHVHFEVIVHETLGRAQASRGDAPPSVPVGPSSPRPGAAT 129
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BLAST of mRNA_H-elongata_contig139227.2734.1 vs. uniprot
Match: A0A7S3YBR7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBR7_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 2.950e-9
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   19 RRHHCRQCLKLVCSACSSNTWQLDSSRRIRGTTDRRAGFKRVCNECYAALNTAREV-LVGG 198
            RRHHCR CL+LVCSACSS T  ++        +  +   +RVC+ CY  L+ AREV +VGG
Sbjct:   39 RRHHCRYCLRLVCSACSSRTLVIEQQNSTSAPSKDQTP-QRVCDHCYVTLSEAREVEVVGG 98
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BLAST of mRNA_H-elongata_contig139227.2734.1 vs. uniprot
Match: G0MKC6_CAEBE (FYVE-type domain-containing protein n=1 Tax=Caenorhabditis brenneri TaxID=135651 RepID=G0MKC6_CAEBE)

HSP 1 Score: 51.2 bits (121), Expect = 6.710e-6
Identity = 24/74 (32.43%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:   19 RRHHCRQCLKLVCSACSSNTWQLDSSRRIRGTTDRRAGFKRVCNECYAALNTAREVLVGGDPSTLKSGEHINFE 240
            RRHHCR C ++VC +CS+ T+++D+  +            RVC+ C+ +L+T+     G +P   K+G  ++ E
Sbjct:   13 RRHHCRNCGRVVCGSCSTKTYRIDNVNKKP---------VRVCDHCFESLSTSNPGQAGPEP---KTGNRLHHE 74
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BLAST of mRNA_H-elongata_contig139227.2734.1 vs. uniprot
Match: A0A2H2HWK9_CAEJA (Uncharacterized protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2HWK9_CAEJA)

HSP 1 Score: 52.0 bits (123), Expect = 2.170e-5
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:   19 RRHHCRQCLKLVCSACSSNTWQLDSSRRIRGTTDRRAGFKRVCNECYAALNTAREVLVGGDPSTLKSGEHINFE 240
            RRHHCR C ++VC +CSS T+++D+  +            RVC+ C+  LNT+     GG PS   +G  ++ +
Sbjct:  171 RRHHCRNCGRVVCGSCSSKTFRIDNVNKKP---------VRVCDHCFDNLNTS-----GGVPSEQMTGNRLHHD 230
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BLAST of mRNA_H-elongata_contig139227.2734.1 vs. uniprot
Match: YOTB_CAEEL (Uncharacterized protein ZK632.12 n=7 Tax=Caenorhabditis TaxID=6237 RepID=YOTB_CAEEL)

HSP 1 Score: 50.8 bits (120), Expect = 5.680e-5
Identity = 26/74 (35.14%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:   19 RRHHCRQCLKLVCSACSSNTWQLDSSRRIRGTTDRRAGFKRVCNECYAALNTAREVLVGGDPSTLKSGEHINFE 240
            RRHHCR C ++VC ACSS T+++D+  +            RVC+ C+ +L++A     G + S  K+G  ++ E
Sbjct:  171 RRHHCRNCGRVVCGACSSRTFRIDNVHKKP---------VRVCDHCFDSLSSATP---GQEESEPKTGNRLHHE 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139227.2734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LL66_ECTSI1.420e-3254.78FYVE, RhoGEF and PH domain containing 6 n=1 Tax=Ec... [more]
A0A7S3YBR7_HETAK2.950e-949.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
G0MKC6_CAEBE6.710e-632.43FYVE-type domain-containing protein n=1 Tax=Caenor... [more]
A0A2H2HWK9_CAEJA2.170e-535.14Uncharacterized protein n=1 Tax=Caenorhabditis jap... [more]
YOTB_CAEEL5.680e-535.14Uncharacterized protein ZK632.12 n=7 Tax=Caenorhab... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139227contigH-elongata_contig139227:272..1162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-24_002760.1
Exons3
Model size357
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139227.2734.1prot_H-elongata_contig139227.2734.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139227 272..1162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.432617-CDS-H-elongata_contig139227:271..4541622929826.432617-CDS-H-elongata_contig139227:271..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139227 272..454 +
1691679174.154036-CDS-H-elongata_contig139227:271..4541691679174.154036-CDS-H-elongata_contig139227:271..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139227 272..454 +
1622929826.4478226-CDS-H-elongata_contig139227:690..7471622929826.4478226-CDS-H-elongata_contig139227:690..747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139227 691..747 +
1691679174.1612165-CDS-H-elongata_contig139227:690..7471691679174.1612165-CDS-H-elongata_contig139227:690..747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139227 691..747 +
1622929826.46407-CDS-H-elongata_contig139227:1045..11621622929826.46407-CDS-H-elongata_contig139227:1045..1162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139227 1046..1162 +
1691679174.1717591-CDS-H-elongata_contig139227:1045..11621691679174.1717591-CDS-H-elongata_contig139227:1045..1162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139227 1046..1162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139227.2734.1

>prot_H-elongata_contig139227.2734.1 ID=prot_H-elongata_contig139227.2734.1|Name=mRNA_H-elongata_contig139227.2734.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
LSSHKSRRHHCRQCLKLVCSACSSNTWQLDSSRRIRGTTDRRAGFKRVCN
ECYAALNTAREVLVGGDPSTLKSGEHINFEVVVHEVLGGIPARWKHPPPP
VPTGTSLTVSGTKTDTGAG
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mRNA from alignment at H-elongata_contig139227:272..1162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139227.2734.1 ID=mRNA_H-elongata_contig139227.2734.1|Name=mRNA_H-elongata_contig139227.2734.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=891bp|location=Sequence derived from alignment at H-elongata_contig139227:272..1162+ (Himanthalia elongata Himel1 dioecious)
CTATCCTCCCACAAGAGCAGGCGACATCACTGCCGCCAGTGCTTGAAGCT
CGTGTGCTCGGCCTGCAGCTCGAATACGTGGCAGCTCGACTCAAGCCGGA
GGATCCGAGGTACCACCGATCGCCGGGCAGGCTTTAAGCGTGTTTGCAAC
GAGTGCTACGCGGCGCTTAACACTGCCCGAGAGGTGCGACCGGGGAGGTA
TCGAAACTTTATCGGTTGGGTTTGGGGGCCATATCTGTGCCTTAAAAATA
TGCCATATAAAATCACCGGCGGACGTGATTGGTTGGGAAACACTAGGAGG
TATCGTGGTACGGTGGATTCATCTATTCCGCCGCTGCCCACCAACTTTGC
CCGTGCCCGAGCTACCCTCGCGCATGCGTCATTTTACCGTTTTGACGACT
TGGACGGATATCCATTTAGGTGCTTGTCGGGGGAGATCCTTCAACCCTCA
AATCGGGAGAGCACATTAATTTCGAGGTATGTTGTTACTGGCATGACACA
AGCGCTCTCGCGAGGGAGGACACGGGTTGGAAATAGTGGGATCGGTAATT
CTGAGCAACATATATTGTCCCGCACGTTAAGTGGTCGAGGTTGTTTTCGA
CGGTTGTAGAGCAGACAGAGAGGGGAATCTTATCACTGTAGGTGCTGATT
ACCTCGGCGTTCGTTGGATGCGTTTTCGGTTTTGTTCCTGATTTGTGCTG
CATGAAATTCTCGCCGCGCCCCTCGGAGTCAGTACCAAGCTTCCACCTTC
GTCAATGTACACTGCTGCTCACAGGTTGTCGTGCATGAGGTACTCGGTGG
CATTCCTGCCCGGTGGAAGCACCCCCCCCCACCGGTCCCTACTGGCACGT
CCTTGACTGTGTCGGGGACGAAAACCGACACGGGCGCTGGA
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Coding sequence (CDS) from alignment at H-elongata_contig139227:272..1162+

>mRNA_H-elongata_contig139227.2734.1 ID=mRNA_H-elongata_contig139227.2734.1|Name=mRNA_H-elongata_contig139227.2734.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig139227:272..1162+ (Himanthalia elongata Himel1 dioecious)
CTATCCTCCCACAAGAGCAGGCGACATCACTGCCGCCAGTGCTTGAAGCT
CGTGTGCTCGGCCTGCAGCTCGAATACGTGGCAGCTCGACTCAAGCCGGA
GGATCCGAGGTACCACCGATCGCCGGGCAGGCTTTAAGCGTGTTTGCAAC
GAGTGCTACGCGGCGCTTAACACTGCCCGAGAGCTATCCTCCCACAAGAG
CAGGCGACATCACTGCCGCCAGTGCTTGAAGCTCGTGTGCTCGGCCTGCA
GCTCGAATACGTGGCAGCTCGACTCAAGCCGGAGGATCCGAGGTACCACC
GATCGCCGGGCAGGCTTTAAGCGTGTTTGCAACGAGTGCTACGCGGCGCT
TAACACTGCCCGAGAGGTGCTTGTCGGGGGAGATCCTTCAACCCTCAAAT
CGGGAGAGCACATTAATTTCGAGGTGCTTGTCGGGGGAGATCCTTCAACC
CTCAAATCGGGAGAGCACATTAATTTCGAGGTTGTCGTGCATGAGGTACT
CGGTGGCATTCCTGCCCGGTGGAAGCACCCCCCCCCACCGGTCCCTACTG
GCACGTCCTTGACTGTGTCGGGGACGAAAACCGACACGGGCGCTGGAGTT
GTCGTGCATGAGGTACTCGGTGGCATTCCTGCCCGGTGGAAGCACCCCCC
CCCACCGGTCCCTACTGGCACGTCCTTGACTGTGTCGGGGACGAAAACCG
ACACGGGCGCTGGA
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