prot_H-elongata_contig139169.2729.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig139169.2729.1
Unique Nameprot_H-elongata_contig139169.2729.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length54
Homology
[Close]
BLAST of mRNA_H-elongata_contig139169.2729.1 vs. uniprot
Match: D8LUA2_ECTSI (Tyrosine Decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA2_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.620e-9
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0 
Query:    1 RISSSGIAFFSSTKLKGQTCLQICLGSTLTNSRHVQELWNAISETAN 47
            RI +SG+AFFSSTKL+G+TCL++ +G   T  RH+++LW A+  TA+
Sbjct:  479 RIVASGLAFFSSTKLEGRTCLRVSVGGLATEMRHIRDLWGALGRTAD 525
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139169.2729.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUA2_ECTSI6.620e-953.19Tyrosine Decarboxylase n=1 Tax=Ectocarpus siliculo... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1150.170coord: 1..53
e-value: 5.5E-10
score: 40.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139169contigH-elongata_contig139169:217..378 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139169.2729.1mRNA_H-elongata_contig139169.2729.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig139169 217..378 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig139169.2729.1 ID=prot_H-elongata_contig139169.2729.1|Name=mRNA_H-elongata_contig139169.2729.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
RISSSGIAFFSSTKLKGQTCLQICLGSTLTNSRHVQELWNAISETANDLV
EAT*
back to top