mRNA_H-elongata_contig139161.2728.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A6H5L4J3_9PHAE (RED_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J3_9PHAE) HSP 1 Score: 136 bits (343), Expect = 4.860e-36 Identity = 68/80 (85.00%), Postives = 72/80 (90.00%), Query Frame = 1
Query: 1 RGKLIITSDAADLNKYRDRADERRKGHNPDYADKLNQMATMDAETTKYLGGDIEHTHLVKGLDYALLVKIREEERHRQPE 240
RGKLI+ S D NKYRDRADERRKG NPDYADKLNQMA+MDAETTKYLGGD+EHTHLVKGLDYALLVKIREEER +Q E
Sbjct: 92 RGKLIVASGVNDPNKYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIE 171
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A4D9CVF8_9STRA (RED_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF8_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 5.510e-20 Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 1
Query: 16 ITSDAADLNKYRDRADERRKGHNPDYADKLNQMATMDAETTKYLGGDIEHTHLVKGLDYALLVKIR 213
+ A++ YRDRA+ERRKG NPDY D++ ++ MDAETTKYLGGD++HTHLVKGLDYALL ++R
Sbjct: 140 VAGGASEEGGYRDRAEERRKGVNPDYEDEIARLVHMDAETTKYLGGDVKHTHLVKGLDYALLQRVR 205
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A7S3XKR5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKR5_HETAK) HSP 1 Score: 87.4 bits (215), Expect = 1.350e-18 Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 46 YRDRADERRKGHNPDYADKLNQMATMDAETTKYLGGDIEHTHLVKGLDYALLVKIREE 219
YRDRA ERR+G+NPDY D + +M MD E +KYLGGD++HTHLV+GLDYALL K+R+E
Sbjct: 114 YRDRAAERRQGYNPDYDDDIEKMVQMDVEKSKYLGGDVKHTHLVRGLDYALLNKVRQE 171
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A7S2W4J1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4J1_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 5.010e-17 Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 1
Query: 43 KYRDRADERRKGHNPDYADKLNQMATMDAETTKYLGGDIEHTHLVKGLDYALLVKIREE 219
KYRDRA+ERRK NPDY + ++ +D E +KYLGGD+EHTHLVKGLDYALL K+R+E
Sbjct: 71 KYRDRANERRKEINPDYKTDVQKLLEVDIEKSKYLGGDVEHTHLVKGLDYALLSKVRDE 129
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A812YWK0_SYMMI (SMU2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YWK0_SYMMI) HSP 1 Score: 80.9 bits (198), Expect = 3.290e-16 Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 19 TSDAADLNKYRDRADERRKGHNPDYADKLNQMATMDAETTKYLGGDIEHTHLVKGLDYALLVKIR 213
TS AD YRDRA ERR NPDY +L +A +D E TKYLGGD EHTHLVKGLDYALL K+R
Sbjct: 66 TSKKAD--NYRDRAQERRNDANPDYDAQLEAVANLDVEQTKYLGGDEEHTHLVKGLDYALLRKVR 128
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A397GNT5_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GNT5_9GLOM) HSP 1 Score: 81.3 bits (199), Expect = 3.630e-16 Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 1 RGKLIITSDAADL-NKYRDRADERRKGHNPDYADKLNQMATMDAET---------TKYLGGDIEHTHLVKGLDYALLVKIREE 219
R + + TSDA NKYRDRA ERRKG NPDY + + +++ET +KYLGGD EHTHLVKGLDYALL K+R E
Sbjct: 74 RFRKLETSDAETTDNKYRDRAAERRKGANPDYQETEQILKALNSETLEAKLIYEQSKYLGGDTEHTHLVKGLDYALLAKVRNE 156
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A7R9YBH1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBH1_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 9.340e-16 Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 46 YRDRADERRKGHNPDYADKLNQMAT--MDAETTKYLGGDIEHTHLVKGLDYALLVKIR 213
YRDRA ERR G NPDYA +L +A +DA TKYLGGD+EHTHLVKGLD+ALL K+R
Sbjct: 113 YRDRAAERRAGLNPDYAGELEDLAAKKVDASMTKYLGGDVEHTHLVKGLDFALLHKVR 170
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A7R9Z3L9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z3L9_9CHLO) HSP 1 Score: 76.3 bits (186), Expect = 1.060e-15 Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 43 KYRDRADERRKGHNPDYADKLNQMAT----------MDAETTKYLGGDIEHTHLVKGLDYALLVKIR 213
KYRDRA+ERR+G NPDYA NQ+A + E TKYLGGDIEHTHLVKGLD+ALL K R
Sbjct: 72 KYRDRAEERRRGINPDYAS-ANQLAAALPGDVDMNALSVEETKYLGGDIEHTHLVKGLDFALLQKER 137
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A1Y1YJX7_9FUNG (RED_N domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YJX7_9FUNG) HSP 1 Score: 78.2 bits (191), Expect = 4.300e-15 Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 34 DLNKYRDRADERRKGHNPDYADKLNQMATMDA--------ETTKYLGGDIEHTHLVKGLDYALLVKIREE 219
D KYRDRA ERR+G NPDY + +AT+ E +KYLGGD EHTHLVKGLDYALL K+R E
Sbjct: 91 DSEKYRDRARERRRGENPDYVETERILATLQTPEDPNLAYEKSKYLGGDAEHTHLVKGLDYALLEKVRRE 160
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A397VSA2_9GLOM (RED-like protein N-terminal region-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397VSA2_9GLOM) HSP 1 Score: 78.2 bits (191), Expect = 4.400e-15 Identity = 43/69 (62.32%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 43 KYRDRADERRKGHNPDYADK------LNQMATMDA----ETTKYLGGDIEHTHLVKGLDYALLVKIREE 219
KYRDRA ERRKG NPDY + LN T++A E +KYLGGD EHTHLVKGLDYALL K+R E
Sbjct: 84 KYRDRAAERRKGANPDYQETEQILKALNNSETLEAKMIYEQSKYLGGDTEHTHLVKGLDYALLAKVRNE 152 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig139161.2728.1 >prot_H-elongata_contig139161.2728.1 ID=prot_H-elongata_contig139161.2728.1|Name=mRNA_H-elongata_contig139161.2728.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp RGKLIITSDAADLNKYRDRADERRKGHNPDYADKLNQMATMDAETTKYLGback to top mRNA from alignment at H-elongata_contig139161:1255..1494+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig139161.2728.1 ID=mRNA_H-elongata_contig139161.2728.1|Name=mRNA_H-elongata_contig139161.2728.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig139161:1255..1494+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig139161:1255..1494+ >mRNA_H-elongata_contig139161.2728.1 ID=mRNA_H-elongata_contig139161.2728.1|Name=mRNA_H-elongata_contig139161.2728.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig139161:1255..1494+ (Himanthalia elongata Himel1 dioecious)back to top |