mRNA_H-elongata_contig139160.2727.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 177 bits (449), Expect = 8.190e-47 Identity = 91/253 (35.97%), Postives = 152/253 (60.08%), Query Frame = 1
Query: 46 ALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGAVGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVVDGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVE 804
A+ + +W+KA E E+ V+++V RP+D+ +G+K V K K G DG+VEKYK RLVAQGF QVE + Y E ++P + SIR+LLA AA D E+ D + AFL +++E++Y+++P ++ AV RL K YGL QA R W +++ +GF + + D CVF K +D + + V+V+D + + + + ++LG F++ D+G+ + + +TRNR+ R +++ Q Y+E ++E
Sbjct: 1001 AMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPI-IAVYVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILE 1252
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 169 bits (429), Expect = 3.810e-44 Identity = 99/270 (36.67%), Postives = 151/270 (55.93%), Query Frame = 1
Query: 10 TLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGA--VGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVV---DGEAEVAVV-VHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 801
T DI EPRN +A + W+KA + E +++N ++ V P DK VG++ V K K DG VEK+K RLVAQG+ Q E + Y E +SP SIR LLA A D E+ D AFL D+ +++Y++ PE YR V +L K YGL Q+ RCWN+T S + + G++Q D C++ K V +G+ ++ +HV+DIL + D ++ +G F ++D+G+ + +G I R+R +R L I Q Y+E ++
Sbjct: 827 TADINEPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVL 1096
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT) HSP 1 Score: 166 bits (419), Expect = 7.710e-43 Identity = 91/267 (34.08%), Postives = 155/267 (58.05%), Query Frame = 1
Query: 10 TLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEY--RKFLGAVGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVV-DGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 801
T DI EP N +A +W++A + E +++N ++ V+ PK K VG+K V K K ++G V++YK RLVAQG+ Q E V Y+E +SP +IR LLA + AK+ E+ D + AFL +++E +Y+ P+ Y ++ V +L K YGL Q+ RCWNN + + + G++Q ++DPC++ K + D + + +HV+DIL + D + +G F + DMG+ ++ +G I R+R+ ++ I Q Y++ ++
Sbjct: 717 TADINEPINMDEAFSGEHSAEWKQATDSEYNSLIENETWELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEE-IYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLYMKSIRDQNGVIILSIHVDDILLFSNDSCMLSEEKKLIGLKFKVDDMGEVKHVLGMVIRRDRRKGKMMISQSTYLQGIL 982
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 164 bits (414), Expect = 2.290e-42 Identity = 91/261 (34.87%), Postives = 149/261 (57.09%), Query Frame = 1
Query: 19 IQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGAVGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVVDGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 801
+ +P++ +A+ + + W+ A E+ V +Y +V RP+D+ VG K V + K G DG++EKYK R+VA+GF QVE V YT+ ++P ASIR LLA AA D E+ D + AFL ++DE++++ P ++ V +L K YGL QA R W ++ ++GF + D VF K DG + V V+++D+L ++ A+LG +++ D+G+AR + I R+R R +++ Q YVES++
Sbjct: 279 LDDPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGFTRSNADHSVFYKNEDGVLLI-VAVYIDDMLIFCNSLPAVEALKADLGSHYDMTDLGEARRILNIKIIRDRARRTIELTQRQYVESIL 538
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU) HSP 1 Score: 162 bits (409), Expect = 1.490e-41 Identity = 92/269 (34.20%), Postives = 148/269 (55.02%), Query Frame = 1
Query: 1 MHATLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGAVGRLNKDSYGLVQAGRCWNNTFCSDMAA-IGFEQGKTDPCVFRKVVDGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVE 804
+H T + EPR +A + EW +W++A + E+ + Y P + +G + V + K DG++ +YK RLVAQGF Q + Y E ++P T S+R+LLA AA ++ EL FD A+L D+DE++Y+ P Y + + RL K YGL QAG WN+ + A +GF++ +DPCV+ K + V +HV+D+ A A MD + L + + + D+G R +G I+R+RK R L I Q Y++++++
Sbjct: 6 LHGTETVHEPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKK-SPKGLTIVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLD 273
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A0J7KG03_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KG03_LASNI) HSP 1 Score: 160 bits (406), Expect = 3.690e-41 Identity = 96/260 (36.92%), Postives = 150/260 (57.69%), Query Frame = 1
Query: 16 DIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGAVGRLNKDS-YGLVQA-GRCWNNTFCSDMAAIGFEQGKTDPCVFRKVVDGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYV 789
D+ +P N +AL SS+ W KA E E + N + V PKDK A+ TK V K K G++++YK RLV +G Q+E + Y E YSP SI+ L A A D + D A+L DI++++Y++ PEE K G G++ + Y +A GR WN F + +GF++ + D CV+ K D ++ V + V+V+D+L A ++ +L QTF++KD+G+A+Y +G +ITR+RKAR++ +DQ Y+
Sbjct: 625 DVTDPENLEEALNSSDSVTWIKAMEEERDFLAKNGTWTLVDLPKDKRALDTKWVFKTKRDVTGQIKRYKARLVVRGCSQIEGIDYNETYSPVVRYTSIQFLCALAVKHDLYMDQMDVTAAYLHGDIEQEIYVKPPEELVKS-GEKGKVWRPKVYIRTEASGRAWNKKFHDTLTDMGFKRSQADSCVYFKR-DNKSLVIIAVYVDDLLILASNEKVKTSLKKKLSQTFDMKDLGEAKYLLGMNITRDRKARKIWLDQSTYI 882
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI) HSP 1 Score: 159 bits (403), Expect = 1.080e-40 Identity = 89/256 (34.77%), Postives = 153/256 (59.77%), Query Frame = 1
Query: 13 LDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKF-LGAVGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVVDGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQ 777
L ++EP++ ++A+ + + W+++ + EM +++N ++ V +P+ V K V K K G +E++K RLVA+GF Q + V + E Y+P ++R LL AA+D EL D + AFL +++E++Y++ P+ Y + V RL K YGL QA R W+ +++ I F ++D +F V+DGE V VVV V+DIL AK + + + A L + F+++D+G A Y++G +TR+R+AR +K+ Q
Sbjct: 556 LGLKEPQSYQEAVGGEQSEIWRQSMDDEMRSLLENGTWELVPKPEGVKPVPMKWVYKIKRDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPETVCRLKKTIYGLRQAPRAWHQKLKTELGEIEFRASESDAALFTGVIDGE-RVWVVVWVDDILIAAKGEQRLAKVKAHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKLTQ 810
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 157 bits (397), Expect = 1.250e-40 Identity = 91/276 (32.97%), Postives = 148/276 (53.62%), Query Frame = 1
Query: 1 MHATLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGAVGRLNKDS---------YGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVVDGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 801
M AT ++ P+ +A + D+W+KA E+ ++ N +K V +P + +G + V K + G+V +YK RLVA+G+ Q + Y E YSP S+R +LA A+ E+ D + AFL +++E++Y+E+PE R+ L +D YGL QA R WN T + + GFE DPCV+ + +GE E V ++V+D+L ++ KA + A + + F +KD+G AR+ +G I + + R L I Q Y ES++
Sbjct: 59 MAATEEV--PKTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESII 331
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID) HSP 1 Score: 159 bits (401), Expect = 2.080e-40 Identity = 90/270 (33.33%), Postives = 145/270 (53.70%), Query Frame = 1
Query: 7 ATLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEY--RKFLGAVGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVV---DGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 801
A +D +EP +AL S + W+ A + E +++N +K V P DK VG+K V K K G DGK+++ K RLVAQG+ Q + Y + ++P SIR +LA D EL D + AFL D++ED++++ PE + R +L K YGL Q+ RCWN + GF + DPC++ K + D + V V+V+D+L + + +LG+ F ++D + + +G + R+RK R L IDQ+ ++ S++
Sbjct: 769 AIVDEEEPTTIEEALSSPNAELWKDAIQNEYDSLIENETWKLVEMPPDKNLVGSKWVFKHKRGADGKIQRCKARLVAQGYSQKSGIDYNDVFAPVAKYNSIRSVLAITNELDLELHQMDVKTAFLNGDLEEDIFMKQPEGFINRDNPNMACKLQKSIYGLKQSARCWNEKMDEFLKESGFTRNDADPCIYHKQITKGDKSFTLIVAVYVDDLLIACNNIQILREQKQKLGERFEMEDKSEVHFILGMQVKRDRKNRRLTIDQNAFLSSVL 1038
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 157 bits (398), Expect = 5.260e-40 Identity = 93/270 (34.44%), Postives = 155/270 (57.41%), Query Frame = 1
Query: 10 TLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEY--RKFLGAVGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVV---DGEAE-VAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 801
T DI EP + ++A +W++A + E ++ N ++ V PK K VG++ V K K DG VE++K RLVAQG+ Q + + Y E +SP SIR LLA A D E+ D + AFL ++DE ++++ PE Y ++ V +LN+ YGL QA RCWN+ + + + G+ + DPC++ K + +G+ + V + ++V+DIL + + + + L + F ++DMG+ Y +G + RNR+AR L I+Q Y+E ++
Sbjct: 808 TADINEPVHIQEAWTGDHSVEWKEATDSEYESLMKNDTWELVPPPKGKNIVGSRWVFKVKHTADGSVERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVL 1077 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig139160.2727.1 >prot_H-elongata_contig139160.2727.1 ID=prot_H-elongata_contig139160.2727.1|Name=mRNA_H-elongata_contig139160.2727.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=268bp MHATLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDback to top mRNA from alignment at H-elongata_contig139160:2..805- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig139160.2727.1 ID=mRNA_H-elongata_contig139160.2727.1|Name=mRNA_H-elongata_contig139160.2727.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=804bp|location=Sequence derived from alignment at H-elongata_contig139160:2..805- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig139160:2..805- >mRNA_H-elongata_contig139160.2727.1 ID=mRNA_H-elongata_contig139160.2727.1|Name=mRNA_H-elongata_contig139160.2727.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1608bp|location=Sequence derived from alignment at H-elongata_contig139160:2..805- (Himanthalia elongata Himel1 dioecious)back to top |