mRNA_H-elongata_contig13915.2726.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13915.2726.1 vs. uniprot
Match: A0A6H5LHX0_9PHAE (Glyco_hydro_114 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LHX0_9PHAE) HSP 1 Score: 276 bits (706), Expect = 1.230e-88 Identity = 148/276 (53.62%), Postives = 174/276 (63.04%), Query Frame = 3
Query: 15 QDYREDEESFPRSALGYPKYDSEGEWWVNINDKEILTVMEERLNLATEKECDGVAPDEIEVYALGADVTNWNITADDQLTYNRWLADEAHARNLSVGLKNDADQATELEPYFDWAMSTDCYTLGLCDMYDVFVGQEKAVVAAEFLVGDLSVCNSTYAESIDFIVKGLELDAHRCSCGFPETNVECQSVLAANSATEEPSSGNLIEEEE--------SASAEDGTGEEGASTWVIVTVIALAVLVAMAACGACAWRKRWKRLRRLNDMMAPGVDDFC 818
++YR+DE FPRSALG S G WW+NIND++I VME RL+LA+EK CD V PD +E Y AD T WNITAD+QL YN+W+AD+AHARNLSVGLKND Q ELEP+FDWA+STDCY C Y FV KAV+ AEF V DL +CN T IDFIVK ELD RCSCGFPETN EC VLA +++ + + +G G +G TWVIVT IA+AVL M A GA WR+R R D GVDDFC
Sbjct: 81 EEYRDDEADFPRSALGNRVEHSVGTWWININDEDIKPVMEGRLDLASEKGCDAVDPDFMESYTFSADETGWNITADEQLEYNKWIADQAHARNLSVGLKNDRLQMEELEPWFDWALSTDCYDEEDCGSYGPFVTAGKAVLDAEFAVQDLGLCNDTLWHPIDFIVKSYELDEQRCSCGFPETNFECDEVLAGHASXXXXXXXXXXXXXXXXXXXXXGTDDSGEGQGGDGTPTWVIVTAIAVAVLAGMMAYGAMVWRRR-----RGKDKKVEGVDDFC 351
BLAST of mRNA_H-elongata_contig13915.2726.1 vs. uniprot
Match: A0A6H5K149_9PHAE (Glyco_hydro_114 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K149_9PHAE) HSP 1 Score: 176 bits (446), Expect = 2.670e-50 Identity = 102/248 (41.13%), Postives = 139/248 (56.05%), Query Frame = 3
Query: 24 REDEESFPRSALGYPKYDS-EGEWWVNINDKEILTVMEERLNLATEKECDGVAPDEIEVYALGADVTNWNITADDQLTYNRWLADEAHARNLSVGLKNDADQATELEPYFDWAMSTDCYTLGLCDMYDV-FVGQEKAVVAAEFLVGDLSVCNSTYAESIDFIVKGLELDAHRCSCGFPETNVECQSVLAANSATEEPSSGNLIEEEESASAEDGTGEEGASTWVIVTVIALAVLVAMAACGACAWRKR 761
R D + F LG D EGE W+NI + +LTVM RL+LAT K C GV P ++VY + + +NITA DQLTYN WLA +AH RNLSVGL+ND Q +LEP FDWA+S DC G C Y+ F+ KAV+ E+ DL+ C++ A +D I+K L LDA RCSC P T+++C +L T+ P+ + +S+WVI T + ++ + +AA WR R
Sbjct: 37 RIDSDDFESDWLGGGVEDGFEGERWLNITAEGVLTVMRARLDLATNKSCHGVEPSNVQVYL--EENSGFNITASDQLTYNTWLAGQAHDRNLSVGLRNDWLQLDDLEPSFDWALSEDCLFQGECGAYEPNFISAGKAVLDVEYFQFDLAFCDNVTASGLDIIIKDLSLDARRCSCQNPSTHIDCDELL-----TQSPT----------------VAADSSSSWVIATAVGASLFIILAATLVGLWRLR 261
BLAST of mRNA_H-elongata_contig13915.2726.1 vs. uniprot
Match: A0A7C4ZPA0_9CHLR (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C4ZPA0_9CHLR) HSP 1 Score: 148 bits (374), Expect = 1.490e-39 Identity = 77/177 (43.50%), Postives = 109/177 (61.58%), Query Frame = 3
Query: 15 QDYREDEESFPRSALGYPKYDSEGEWWVNINDKEIL-TVMEERLNLATEKECDGVAPDEIEVYALGADVTNWNITADDQLTYNRWLADEAHARNLSVGLKNDADQATELEPYFDWAMSTDCYTLGLCDMYDVFVGQEKAVVAAEFLVGDLSVCNSTYAESIDFIVKGLELDAHRCSC 542
+D+R D FP + +G P D GE W++I ++L +M+ RL+LA +K+CDGV PD ++ YA ++T + +TA DQLTYN WLA+EAHAR LSVGLKND DQ +L +FDWA++ C+ CD FV KAV E+ + C + + D++ K L LDA R +C
Sbjct: 119 EDWRSDASQFPNTVIGQPLDDWPGEKWLDIRRLDLLGPIMQARLDLARQKKCDGVEPDNVDGYA---NITGFPLTAQDQLTYNLWLANEAHARRLSVGLKNDLDQVPDLVTHFDWALNEQCFQYDECDKLLPFVQAGKAVFGVEYELSPAQFCPQANSMNFDWLKKKLNLDAWRQAC 292
BLAST of mRNA_H-elongata_contig13915.2726.1 vs. uniprot
Match: UPI001E5098C4 (endo alpha-1,4 polygalactosaminidase n=1 Tax=Massilia sp. TW-1 TaxID=2717319 RepID=UPI001E5098C4) HSP 1 Score: 142 bits (359), Expect = 2.620e-38 Identity = 75/177 (42.37%), Postives = 106/177 (59.89%), Query Frame = 3
Query: 15 QDYREDEESFPRSALGYPKYDSEGEWWVNINDKEIL-TVMEERLNLATEKECDGVAPDEIEVYALGADVTNWNITADDQLTYNRWLADEAHARNLSVGLKNDADQATELEPYFDWAMSTDCYTLGLCDMYDVFVGQEKAVVAAEFLVGDLSVCNSTYAESIDFIVKGLELDAHRCSC 542
+D+RED SFP S LG E W++I +L ++M +R+++A K CDGV PD ++ Y T + +TA DQL YN+ +A EAH RNLSVGLKND +Q L PYFD+A++ +C+ C +Y F G KAV E+ + + C A ++DF+ K L LDA+R SC
Sbjct: 34 EDWREDAASFPASVLGNTLDGWPDERWLDIRQLTVLRSIMGKRMDMAASKGCDGVDPDNVDSYTND---TGFPLTAQDQLDYNKMIAQEAHNRNLSVGLKNDIEQVKVLAPYFDFAINEECFDYNECGVYTAFTGLNKAVFGIEYSLAPTTFCPKANAANMDFLKKRLSLDAYRVSC 207
BLAST of mRNA_H-elongata_contig13915.2726.1 vs. uniprot
Match: G8RVR2_MYCRN (Glyco_hydro_114 domain-containing protein n=1 Tax=Mycolicibacterium rhodesiae (strain NBB3) TaxID=710685 RepID=G8RVR2_MYCRN) HSP 1 Score: 142 bits (359), Expect = 1.590e-37 Identity = 80/177 (45.20%), Postives = 108/177 (61.02%), Query Frame = 3
Query: 24 REDEESFPRSALGYPKYDS-EGEWWVNINDKEILTVMEERLNLATEKECDGVAPDEIEVYALGADVTNWNITADDQLTYNRWLADEAHARNLSVGLKNDADQATELEPYFDWAMSTDCYTLGLCDMY-DVFVGQEKAVVAAEFLVGDL--SVCNSTYAESIDFIVKGLELDAHRCSC 542
R D FP +A G P + E W++I + E+ TVM RL+LA + CD V PD ++ Y T +++TA DQL YNR++A EAH+R LSVGLKND DQ TELEPYFDWA++ +C+T C Y D F+ KAV AE++ G+ VC T + ++K +ELDA SC
Sbjct: 101 RPDAAEFPAAANGNPLDPPFQDELWLDIRNPEVRTVMRRRLDLAATRGCDAVEPDNVDGYRND---TGFDLTAADQLDYNRFIAAEAHSRGLSVGLKNDVDQLTELEPYFDWALNEECFTYNECAQYRDNFLAANKAVFHAEYVNGNRLGEVCAVTERLGLSTLIKNIELDAFALSC 274
BLAST of mRNA_H-elongata_contig13915.2726.1 vs. uniprot
Match: A0A7V5U264_9BACT (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Thermodesulfatator atlanticus TaxID=501497 RepID=A0A7V5U264_9BACT) HSP 1 Score: 141 bits (356), Expect = 5.250e-37 Identity = 75/175 (42.86%), Postives = 102/175 (58.29%), Query Frame = 3
Query: 21 YREDEESFPRSALGYPKYDSEGEWWVNINDKEIL-TVMEERLNLATEKECDGVAPDEIEVYALGADVTNWNITADDQLTYNRWLADEAHARNLSVGLKNDADQATELEPYFDWAMSTDCYTLGLCDMYDVFVGQEKAVVAAEFLVGDLSVCNSTYAESIDFIVKGLELDAHRCSC 542
+R D E FP LG P D E W++I ++L +ME RL+LA EK CDGV PD ++ Y + + + +T +DQL YN WLA++AH R LSVGLKND DQ LEPYFDWA++ +C+ G C+ F+ + KAV E+ + C A + K ELDA R +C
Sbjct: 107 WRPDAEKFPEEILGEPLVDWPDERWLDIRRLDVLGPIMEARLDLAVEKGCDGVEPDNVDAYQ---NESGFPLTYEDQLNYNLWLAEQAHKRGLSVGLKNDLDQIPALEPYFDWALNEECFYYGECEKLRPFIEKGKAVFQVEYYLDPEDFCPEANAMGFSSMKKRPELDAWRIAC 278
BLAST of mRNA_H-elongata_contig13915.2726.1 vs. uniprot
Match: UPI001AD009B8 (Uncharacterized protein n=1 Tax=Thermoflexales bacterium TaxID=2497639 RepID=UPI001AD009B8) HSP 1 Score: 140 bits (354), Expect = 8.940e-37 Identity = 80/180 (44.44%), Postives = 106/180 (58.89%), Query Frame = 3
Query: 15 QDYREDEESFPRSALGYPKYDSEGEWWVNIND-KEILTVMEERLNLATEKECDGVAPDEIEVYALGADVTNWNITADDQLTYNRWLADEAHARNLSVGLKNDADQATELEPYFDWAMSTDCYTLGLCDMYDVFVGQEKAVVAAEFLVGDLSV---CNSTYAESIDFIVKGLELDAHRCSC 542
+++R D + FP + LG GE W++I ++ +M RL+ K DG+ PD IE YA + T + +TA DQLTYN WLADEAHAR LS+GLKND DQ EL PYFDWA++ DC+ G CD FV KAV AAE+ ++ C A + + I+K ELDA R +C
Sbjct: 99 EEWRPDADQFPPAVLGNDYEGWPGEKWLDIRQIDQLAPIMRARLDACRAKGFDGIEPDNIEGYA---NATGFPLTAQDQLTYNIWLADEAHARGLSIGLKNDPDQVAELLPYFDWALTEDCFDQGWCDQLTPFVTAGKAVFAAEYTDTGMTTGQFCPQANALNFNGILKHRELDAWRQAC 275
BLAST of mRNA_H-elongata_contig13915.2726.1 vs. uniprot
Match: UPI001969C6AE (endo alpha-1,4 polygalactosaminidase n=1 Tax=Desulfogranum japonicum TaxID=231447 RepID=UPI001969C6AE) HSP 1 Score: 140 bits (353), Expect = 1.060e-36 Identity = 73/177 (41.24%), Postives = 108/177 (61.02%), Query Frame = 3
Query: 15 QDYREDEESFPRSALGYPKYDSEGEWWVNINDKEIL-TVMEERLNLATEKECDGVAPDEIEVYALGADVTNWNITADDQLTYNRWLADEAHARNLSVGLKNDADQATELEPYFDWAMSTDCYTLGLCDMYDVFVGQEKAVVAAEFLVGDLSVCNSTYAESIDFIVKGLELDAHRCSC 542
++YR+D FP LG E W++I+ +IL +M R++LA EK CDG+ PD I+ Y+ + + +T+++QLTYNRWLA+ AHARNLS+GLKND DQ +L YFDWA++ C+ CD+ FV KAV E+ + + C+ + + D++ K L LD+ R SC
Sbjct: 95 ENYRDDANVFPEEVLGKYLDGWPDERWLDISRIDILGPIMLRRMDLAVEKGCDGIEPDNIDGYSNDS---GFALTSEEQLTYNRWLAEAAHARNLSIGLKNDLDQVQDLVSYFDWALNEQCFQYDECDLLLPFVQAGKAVFGVEYSLSTTTFCSQANSMNFDWLKKNLSLDSWRVSC 268
BLAST of mRNA_H-elongata_contig13915.2726.1 vs. uniprot
Match: A0A0J1DD02_9BURK (Glyco_hydro_114 domain-containing protein n=2 Tax=Massilia TaxID=149698 RepID=A0A0J1DD02_9BURK) HSP 1 Score: 141 bits (356), Expect = 1.800e-36 Identity = 77/177 (43.50%), Postives = 101/177 (57.06%), Query Frame = 3
Query: 15 QDYREDEESFPRSALGYPKYDSEGEWWVNINDKEILT-VMEERLNLATEKECDGVAPDEIEVYALGADVTNWNITADDQLTYNRWLADEAHARNLSVGLKNDADQATELEPYFDWAMSTDCYTLGLCDMYDVFVGQEKAVVAAEFLVGDLSVCNSTYAESIDFIVKGLELDAHRCSC 542
++YR D+ SFP S LG E W++I +L +M +R+++A K CDGV PD ++ Y T + +TA DQL YN+ +A EAH RNLSVGLKND DQ L PYFDWAM+ C C +Y F G KAV E+ + C A ++DF+ K L LDA R SC
Sbjct: 158 ENYRSDKASFPASVLGKVMDGWPDERWLDIRQLTVLRGIMGKRMDVAASKGCDGVDPDNMDGYTND---TGFPLTAQDQLNYNKMIAQEAHNRNLSVGLKNDVDQVKALAPYFDWAMNEQCNQYKECGVYSAFTGLNKAVFGMEYKLDPAVFCPKANAANLDFLKKRLSLDAMRISC 331
BLAST of mRNA_H-elongata_contig13915.2726.1 vs. uniprot
Match: A0A150SSH0_SORCE (Endo alpha-1,4 polygalactosaminidase n=3 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150SSH0_SORCE) HSP 1 Score: 138 bits (348), Expect = 2.220e-36 Identity = 74/178 (41.57%), Postives = 106/178 (59.55%), Query Frame = 3
Query: 15 QDYREDEESFPRSALGYPKYDSEGEWWVNINDKEILTVMEERLNLATEKECDGVAPDEIEVYALGADVTNWNITADDQLTYNRWLADEAHARNLSVGLKNDADQATELEPYFDWAMSTDCYTLGLCDMYDVFVGQEKAVVAAEFLVGDLS--VCNSTYAESIDFIVKGLELDAHRCSC 542
+D+R D FP +ALG P GE W++ + VM+ RL+LA +K CDGV PD ++ Y G+ + +TA QL YNR+LA EAHAR LS+GLKND DQ +L +FDWA++ +C+ C+M F+ KAV AE++ + VC T + ++K L+LDA R +C
Sbjct: 57 EDWRSDASRFPAAALGNPLDGWPGERWLDTRSAGVRDVMKARLDLAVQKRCDGVEPDNVDGYTNGS---GFPLTAATQLDYNRFLAAEAHARGLSIGLKNDLDQVRDLVGHFDWALNEECHAYDECEMLTPFIRAGKAVFHAEYVAASQANAVCADTKPLGLSTLIKRLDLDAWRVAC 231 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13915.2726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13915.2726.1 >prot_H-elongata_contig13915.2726.1 ID=prot_H-elongata_contig13915.2726.1|Name=mRNA_H-elongata_contig13915.2726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp MEERLNLATEKECDGVAPDEIEVYALGADVTNWNITADDQLTYNRWLADEback to top mRNA from alignment at H-elongata_contig13915:1744..4840- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13915.2726.1 ID=mRNA_H-elongata_contig13915.2726.1|Name=mRNA_H-elongata_contig13915.2726.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3097bp|location=Sequence derived from alignment at H-elongata_contig13915:1744..4840- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13915:1744..4840- >mRNA_H-elongata_contig13915.2726.1 ID=mRNA_H-elongata_contig13915.2726.1|Name=mRNA_H-elongata_contig13915.2726.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig13915:1744..4840- (Himanthalia elongata Himel1 dioecious)back to top |