mRNA_H-elongata_contig139149.2725.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139149.2725.1
Unique NamemRNA_H-elongata_contig139149.2725.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139149.2725.1 vs. uniprot
Match: A0A6H5KJM3_9PHAE (Anaphase-promoting complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 7.280e-31
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 ELFVTEYRLMLADKLVNNLAYDTDKEVQNLELLKLRFGESSMHHCEIMVRDVEESKRVNANIQERL 198
            ELFVTEYRLMLADKLV NL+YDTDKEVQNLELLKLRFGE+SM HCEIMVRDVEESKRVNAN+Q+RL
Sbjct:  153 ELFVTEYRLMLADKLVGNLSYDTDKEVQNLELLKLRFGETSMRHCEIMVRDVEESKRVNANVQDRL 218
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BLAST of mRNA_H-elongata_contig139149.2725.1 vs. uniprot
Match: D8LNH8_ECTSI (Anaphase-promoting complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNH8_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 3.190e-26
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:   28 MLADKLVNNLAYDTDKEVQNLELLKLRFGESSMHHCEIMVRDVEESKRVNANIQERL 198
            MLADKLV NL+YDTDKEVQNLELLKLRFGE+SMHHCEIMVRD+EESKRVNAN+Q+RL
Sbjct:    1 MLADKLVGNLSYDTDKEVQNLELLKLRFGETSMHHCEIMVRDLEESKRVNANVQDRL 57
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BLAST of mRNA_H-elongata_contig139149.2725.1 vs. uniprot
Match: A0A225VZU6_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VZU6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.240e-22
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 ELFVTEYRLMLADKLVNNLAYDTDKEVQNLELLKLRFGESSMHHCEIMVRDVEESKRVNANIQ 189
            ELFV EYR+MLADKL+ NL +DTD +VQ LELLKLRFGE S+H CEIMVRD+E+SKR+N N+Q
Sbjct:  445 ELFVNEYRMMLADKLLQNLEFDTDLDVQTLELLKLRFGEDSLHQCEIMVRDIEDSKRLNLNVQ 507
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BLAST of mRNA_H-elongata_contig139149.2725.1 vs. uniprot
Match: A0A7S2S0Y3_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0Y3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.480e-22
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 ELFVTEYRLMLADKLVNNLAYDTDKEVQNLELLKLRFGESSMHHCEIMVRDVEESKRVNANIQ 189
            ELFV EYR MLA KL+ NLAYDT +EV  LELLKLRFGESSM  CEIM+RDVE+SKR+NANIQ
Sbjct:   44 ELFVNEYRSMLASKLIRNLAYDTSREVAILELLKLRFGESSMQQCEIMLRDVEDSKRLNANIQ 106
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BLAST of mRNA_H-elongata_contig139149.2725.1 vs. uniprot
Match: K3X5T3_GLOUD (Anaphase-promoting complex subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5T3_GLOUD)

HSP 1 Score: 98.2 bits (243), Expect = 2.310e-22
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 ELFVTEYRLMLADKLVNNLAYDTDKEVQNLELLKLRFGESSMHHCEIMVRDVEESKRVNANIQ 189
            ELFV EYR+MLADKL+ NL Y+TD++VQ LELLKLRFGE S+  CEIMVRD+E+SKR+N NIQ
Sbjct:  464 ELFVNEYRMMLADKLLQNLEYNTDRDVQTLELLKLRFGEESLQQCEIMVRDIEDSKRINLNIQ 526
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BLAST of mRNA_H-elongata_contig139149.2725.1 vs. uniprot
Match: A0A833WHR5_PHYIN (Anaphase-promoting complex subunit 2 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WHR5_PHYIN)

HSP 1 Score: 98.2 bits (243), Expect = 2.310e-22
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 ELFVTEYRLMLADKLVNNLAYDTDKEVQNLELLKLRFGESSMHHCEIMVRDVEESKRVNANIQERL 198
            ELFV EYR+MLADKL+ NL +DTD++VQ LELLKLRFGE S+  CEIMVRD+E+SKR+N N+Q  L
Sbjct:  450 ELFVNEYRMMLADKLLQNLEFDTDRDVQTLELLKLRFGEDSLQQCEIMVRDIEDSKRLNGNVQSTL 515
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BLAST of mRNA_H-elongata_contig139149.2725.1 vs. uniprot
Match: A0A662YHA6_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHA6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.140e-22
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 ELFVTEYRLMLADKLVNNLAYDTDKEVQNLELLKLRFGESSMHHCEIMVRDVEESKRVNANIQERL 198
            ELFV EYR+MLADKL+ NL YDTD++VQ LELLKLRFGE S+  CEIMVRD+E+SKR+N N++  L
Sbjct:  343 ELFVNEYRMMLADKLLQNLEYDTDRDVQTLELLKLRFGEESLQQCEIMVRDIEDSKRLNLNVRSTL 408
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BLAST of mRNA_H-elongata_contig139149.2725.1 vs. uniprot
Match: A0A2P4YMB7_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YMB7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.300e-22
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 ELFVTEYRLMLADKLVNNLAYDTDKEVQNLELLKLRFGESSMHHCEIMVRDVEESKRVNANIQ 189
            ELFV EYR+MLADKL+ NL +DTD++VQ LELLKLRFGE S+  CEIMVRD+E+SKR+N N+Q
Sbjct:  450 ELFVNEYRMMLADKLLQNLEFDTDRDVQTLELLKLRFGEDSLQQCEIMVRDIEDSKRLNLNVQ 512
[Close]
BLAST of mRNA_H-elongata_contig139149.2725.1 vs. uniprot
Match: B8C5R7_THAPS (Anaphase-promoting complex subunit 2 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5R7_THAPS)

HSP 1 Score: 97.1 bits (240), Expect = 5.870e-22
Identity = 44/66 (66.67%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 ELFVTEYRLMLADKLVNNLAYDTDKEVQNLELLKLRFGESSMHHCEIMVRDVEESKRVNANIQERL 198
            ELFV EYR+MLADKL++NL YDTDK+V NLELLKLRFGE+SM  CE+M++D+++SKR++ NI+  L
Sbjct:  445 ELFVNEYRIMLADKLLSNLEYDTDKDVHNLELLKLRFGEASMRQCEVMIKDIDDSKRIHNNIRSTL 510
[Close]
BLAST of mRNA_H-elongata_contig139149.2725.1 vs. uniprot
Match: A0A8J5MDA6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MDA6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.980e-22
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 ELFVTEYRLMLADKLVNNLAYDTDKEVQNLELLKLRFGESSMHHCEIMVRDVEESKRVNANIQ 189
            ELFV EYR+MLADKL+ NL +DTD++VQ LELLKLRFGE S+  CEIMVRD+E+S+R+N N+Q
Sbjct:  361 ELFVNEYRMMLADKLLQNLQFDTDRDVQTLELLKLRFGEDSLQQCEIMVRDIEDSRRLNVNVQ 423
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139149.2725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJM3_9PHAE7.280e-3190.91Anaphase-promoting complex subunit 2 n=1 Tax=Ectoc... [more]
D8LNH8_ECTSI3.190e-2689.47Anaphase-promoting complex subunit 2 n=1 Tax=Ectoc... [more]
A0A225VZU6_9STRA1.240e-2273.02Anaphase-promoting complex subunit 2 n=1 Tax=Phyto... [more]
A0A7S2S0Y3_9STRA1.480e-2277.78Anaphase-promoting complex subunit 2 n=1 Tax=Rhizo... [more]
K3X5T3_GLOUD2.310e-2273.02Anaphase-promoting complex subunit 2 n=1 Tax=Globi... [more]
A0A833WHR5_PHYIN2.310e-2269.70Anaphase-promoting complex subunit 2 n=2 Tax=Phyto... [more]
A0A662YHA6_9STRA3.140e-2269.70Anaphase-promoting complex subunit 2 n=1 Tax=Notho... [more]
A0A2P4YMB7_9STRA4.300e-2271.43Anaphase-promoting complex subunit 2 n=1 Tax=Phyto... [more]
B8C5R7_THAPS5.870e-2266.67Anaphase-promoting complex subunit 2 n=1 Tax=Thala... [more]
A0A8J5MDA6_9STRA7.980e-2269.84Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139149contigH-elongata_contig139149:245..925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog2880.D8LNH8
Preferred nameAPC2
KEGG koko:K03349
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
GOsGO:0000151,GO:0000152,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009553,GO:0009561,GO:0009987,GO:0010498,GO:0015630,GO:0016567,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031145,GO:0031461,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0051603,GO:0070647,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsKOG2165@1,KOG2165@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size198
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139149.2725.1prot_H-elongata_contig139149.2725.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139149 245..898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.501447-CDS-H-elongata_contig139149:244..2981622929825.501447-CDS-H-elongata_contig139149:244..298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139149 245..298 -
1691679173.8573043-CDS-H-elongata_contig139149:244..2981691679173.8573043-CDS-H-elongata_contig139149:244..298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139149 245..298 -
1622929825.519398-CDS-H-elongata_contig139149:781..8981622929825.519398-CDS-H-elongata_contig139149:781..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139149 782..898 -
1691679173.8669925-CDS-H-elongata_contig139149:781..8981691679173.8669925-CDS-H-elongata_contig139149:781..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139149 782..898 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.5365489-UTR-H-elongata_contig139149:898..9251622929825.5365489-UTR-H-elongata_contig139149:898..925Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139149 899..925 -
1691679173.8848379-UTR-H-elongata_contig139149:898..9251691679173.8848379-UTR-H-elongata_contig139149:898..925Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139149 899..925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139149.2725.1

>prot_H-elongata_contig139149.2725.1 ID=prot_H-elongata_contig139149.2725.1|Name=mRNA_H-elongata_contig139149.2725.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MLADKLVNNLAYDTDKEVQNLELLKLRFGESSMHHCEIMVRDVEESKRVN
ANIQERL
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mRNA from alignment at H-elongata_contig139149:245..925-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139149.2725.1 ID=mRNA_H-elongata_contig139149.2725.1|Name=mRNA_H-elongata_contig139149.2725.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=681bp|location=Sequence derived from alignment at H-elongata_contig139149:245..925- (Himanthalia elongata Himel1 dioecious)
GAGCTTTTCGTTACGGAGTACCGCCTCATGCTGGCCGACAAGCTGGTGAA
CAACCTCGCGTACGACACCGACAAGGAGGTTCAGAACCTTGAGCTGCTCA
AGCTCCGTTTCGGAGAGTCTAGCATGCACCACTGCGAGATCATGGTGAGG
CTCGTTTTGTTGTGCAGGCTCCCCCAGTGGCACGACAGGCGCCTTTGTCC
CGGGACTCGGTCGAAAGTTGTAGCTCGCTCGACAGCATCTGCGTGCTTGC
CCCCCTCTGCCTTAATATTCCGTATTCTTTTGCTCCGTATATGCAGCGGA
TGCCGATCTTGGTATAAGGAAGGGACGTGCTTTCGAACACGATTTGCAGC
TTCCAACACATTGGAAACGATGGTCTTAGGCCTGTGTACACGCTTCAGGA
GAGCCTCGCGTTCGTTGTTTTCCCGTTCCTATGTTGGTGTGTGTTATATT
GCTTGTAGCTGGACAATTATCTACTTAGGTGATGATTTTCGATGCGGAAC
ACACGCCGATCCACGACACGACCCGCGCGAAATATCTCGGGTGACAGGAG
ACACCATGACCCGCGAGCACCCCCCTCTCCCTCCCCATGACGCGCGGGTT
ATTTTTTGGGGGGGAAAACGGGATCAGGTGCGCGATGTGGAAGAATCCAA
GCGGGTGAACGCCAATATCCAGGAGCGACTA
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Coding sequence (CDS) from alignment at H-elongata_contig139149:245..925-

>mRNA_H-elongata_contig139149.2725.1 ID=mRNA_H-elongata_contig139149.2725.1|Name=mRNA_H-elongata_contig139149.2725.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig139149:245..925- (Himanthalia elongata Himel1 dioecious)
ATGCTGGCCGACAAGCTGGTGAACAACCTCGCGTACGACACCGACAAGGA
GGTTCAGAACCTTGAGCTGCTCAAGCTCCGTTTCGGAGAGTCTAGCATGC
ACCACTGCGAGATCATGATGCTGGCCGACAAGCTGGTGAACAACCTCGCG
TACGACACCGACAAGGAGGTTCAGAACCTTGAGCTGCTCAAGCTCCGTTT
CGGAGAGTCTAGCATGCACCACTGCGAGATCATGGTGCGCGATGTGGAAG
AATCCAAGCGGGTGAACGCCAATATCCAGGAGCGACTAGTGCGCGATGTG
GAAGAATCCAAGCGGGTGAACGCCAATATCCAGGAGCGACTA
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