mRNA_H-elongata_contig139112.2722.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139112.2722.1
Unique NamemRNA_H-elongata_contig139112.2722.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig139112.2722.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.040e-19
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 DNTSALQVAGNRTYNPRAKHIALRYFFAQELVEEGKISIHYVKTEDQLADLGTKHLSKHHHRNLV 195
            DNT+ L   GNR+++ R KHIALR+FF +ELV EGKISIHYV TED LAD+GTKH +KH  ++L+
Sbjct:  586 DNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLM 650
[Close]
BLAST of mRNA_H-elongata_contig139112.2722.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.080e-19
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 DNTSALQVAGNRTYNPRAKHIALRYFFAQELVEEGKISIHYVKTEDQLADLGTKHLSKHHHRNLV 195
            DNT+ L   GNR+++ R KHIALR+FF +ELV EGKISIHYV TED LAD+GTKH +KH  ++L+
Sbjct: 1594 DNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLM 1658
[Close]
BLAST of mRNA_H-elongata_contig139112.2722.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.850e-19
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 DNTSALQVAGNRTYNPRAKHIALRYFFAQELVEEGKISIHYVKTEDQLADLGTKHLSKHHHRNLV 195
            DNT+ L   GNR+++ R KHIALR+FF +ELV EGKISIHYV+TED LAD+GTKH + H  ++L+
Sbjct:  925 DNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLM 989
[Close]
BLAST of mRNA_H-elongata_contig139112.2722.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 5.270e-19
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 DNTSALQVAGNRTYNPRAKHIALRYFFAQELVEEGKISIHYVKTEDQLADLGTKHLSKHHHRNLV 195
            DNT+ L   GNR+++ R KHIALR+FF +ELV EGKISIHY  TED LA +GTKH +KH  ++L+
Sbjct:  140 DNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLM 204
[Close]
BLAST of mRNA_H-elongata_contig139112.2722.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.480e-18
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 DNTSALQVAGNRTYNPRAKHIALRYFFAQELVEEGKISIHYVKTEDQLADLGTKHLSKHHHRNLV 195
            DNT+ L   GNR+++ R KHIALR+FF +ELV EGKISIHY  TED LAD+GTKH +KH   +L+
Sbjct:  365 DNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLM 429
[Close]
BLAST of mRNA_H-elongata_contig139112.2722.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.410e-18
Identity = 37/64 (57.81%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    4 NTSALQVAGNRTYNPRAKHIALRYFFAQELVEEGKISIHYVKTEDQLADLGTKHLSKHHHRNLV 195
            NT+ L V GN+T++ R KH+ALR+F+ +E+V+EG+ISIHY+ TED LAD+GTKHL+K  H+ L+
Sbjct:  619 NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLI 682
[Close]
BLAST of mRNA_H-elongata_contig139112.2722.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.030e-17
Identity = 35/65 (53.85%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 DNTSALQVAGNRTYNPRAKHIALRYFFAQELVEEGKISIHYVKTEDQLADLGTKHLSKHHHRNLV 195
            DNT+ L   GNR+++ R KHIALR+F+ +EL+ EG+ISIHY+ T+  +AD+GTKHL+KH  ++L+
Sbjct: 1095 DNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLL 1159
[Close]
BLAST of mRNA_H-elongata_contig139112.2722.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.020e-17
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    7 TSALQVAGNRTYNPRAKHIALRYFFAQELVEEGKISIHYVKTEDQLADLGTKH-LSKHHHRNLV 195
            T+ L   GNR+++ R KHIALR+FF +ELV EGKISIHYV TED LAD+GTKH ++KH  ++L+
Sbjct:  189 TATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFINKHRFKHLM 252
[Close]
BLAST of mRNA_H-elongata_contig139112.2722.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.270e-15
Identity = 33/65 (50.77%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 DNTSALQVAGNRTYNPRAKHIALRYFFAQELVEEGKISIHYVKTEDQLADLGTKHLSKHHHRNLV 195
            D+T+ L V GN+T++   KH+ALR+F+ +++V+EG+ISIHY+ TED LAD+GT++L+K  H+ L+
Sbjct:  706 DSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLI 770
[Close]
BLAST of mRNA_H-elongata_contig139112.2722.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.750e-15
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 DNTSALQVAGNRTYNPRAKHIALRYFFAQELVEEGKISIHYVKTEDQLADLGTKHLSKHHHRNLV 195
            DNT+ L   GNR+++ R  HIALR+F+ +ELV EG+ISIHYV T+  LAD+GTK+L+KH  ++L+
Sbjct: 1123 DNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYLNKHWLKHLL 1187
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139112.2722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JME8_9PHAE2.040e-1963.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE2.080e-1963.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE3.850e-1961.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMK0_9PHAE5.270e-1960.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE1.480e-1861.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBU1_9PHAE3.410e-1857.81CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K129_9PHAE3.030e-1753.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCX7_9PHAE4.020e-1760.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R7_9PHAE1.270e-1550.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBV6_9PHAE1.750e-1555.38Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139112contigH-elongata_contig139112:572..787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.9
Seed ortholog evalue3.4e-08
Seed eggNOG ortholog4565.Traes_7DS_A62A567C4.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.345158-CDS-H-elongata_contig139112:571..7871622929825.345158-CDS-H-elongata_contig139112:571..787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139112 572..787 -
1691679173.8088794-CDS-H-elongata_contig139112:571..7871691679173.8088794-CDS-H-elongata_contig139112:571..787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139112 572..787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139112.2722.1prot_H-elongata_contig139112.2722.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139112 572..787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139112.2722.1

>prot_H-elongata_contig139112.2722.1 ID=prot_H-elongata_contig139112.2722.1|Name=mRNA_H-elongata_contig139112.2722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
DNTSALQVAGNRTYNPRAKHIALRYFFAQELVEEGKISIHYVKTEDQLAD
LGTKHLSKHHHRNLVRDKRSY*
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mRNA from alignment at H-elongata_contig139112:572..787-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139112.2722.1 ID=mRNA_H-elongata_contig139112.2722.1|Name=mRNA_H-elongata_contig139112.2722.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig139112:572..787- (Himanthalia elongata Himel1 dioecious)
GACAACACCTCGGCACTGCAAGTCGCCGGCAACCGCACCTACAACCCTCG
TGCAAAGCACATCGCGCTGAGGTATTTTTTCGCGCAAGAGCTGGTAGAGG
AGGGCAAGATCAGCATACACTACGTCAAGACCGAGGATCAGCTGGCGGAC
TTGGGCACCAAGCACCTTAGCAAGCACCATCATCGCAACCTCGTCCGTGA
CAAACGTTCGTATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig139112:572..787-

>mRNA_H-elongata_contig139112.2722.1 ID=mRNA_H-elongata_contig139112.2722.1|Name=mRNA_H-elongata_contig139112.2722.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig139112:572..787- (Himanthalia elongata Himel1 dioecious)
GACAACACCTCGGCACTGCAAGTCGCCGGCAACCGCACCTACAACCCTCG
TGCAAAGCACATCGCGCTGAGGTATTTTTTCGCGCAAGAGCTGGTAGAGG
AGGGCAAGATCAGCATACACTACGTCAAGACCGAGGATCAGCTGGCGGAC
TTGGGCACCAAGCACCTTAGCAAGCACCATCATCGCAACCTCGTCCGTGA
CAAACGTTCGTATTGAGACAACACCTCGGCACTGCAAGTCGCCGGCAACC
GCACCTACAACCCTCGTGCAAAGCACATCGCGCTGAGGTATTTTTTCGCG
CAAGAGCTGGTAGAGGAGGGCAAGATCAGCATACACTACGTCAAGACCGA
GGATCAGCTGGCGGACTTGGGCACCAAGCACCTTAGCAAGCACCATCATC
GCAACCTCGTCCGTGACAAACGTTCGTATTGA
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