mRNA_H-elongata_contig13908.2719.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13908.2719.1
Unique NamemRNA_H-elongata_contig13908.2719.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13908.2719.1 vs. uniprot
Match: D8LHB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB1_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.260e-15
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 LEFGNSGIWEHVDRRVGTATGGRIMNAMIAGILVTIPLPNEAFCAWKKRTSSVSEPG 171
            +E GN+G+WEH++   GT TGG IM  MIAGI V++PLP EAFCAWK+R+S    PG
Sbjct:  293 VEVGNTGVWEHMEGEDGTPTGGTIMKVMIAGIEVSVPLPPEAFCAWKQRSSPAGLPG 349
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13908.2719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHB1_ECTSI1.260e-1559.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13908contigH-elongata_contig13908:1741..2319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_001240.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.029935-CDS-H-elongata_contig13908:1740..18651622929825.029935-CDS-H-elongata_contig13908:1740..1865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13908 1741..1865 -
1691679173.6883285-CDS-H-elongata_contig13908:1740..18651691679173.6883285-CDS-H-elongata_contig13908:1740..1865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13908 1741..1865 -
1622929825.0515516-CDS-H-elongata_contig13908:2273..23191622929825.0515516-CDS-H-elongata_contig13908:2273..2319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13908 2274..2319 -
1691679173.7021713-CDS-H-elongata_contig13908:2273..23191691679173.7021713-CDS-H-elongata_contig13908:2273..2319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13908 2274..2319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13908.2719.1prot_H-elongata_contig13908.2719.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13908 1741..2319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13908.2719.1

>prot_H-elongata_contig13908.2719.1 ID=prot_H-elongata_contig13908.2719.1|Name=mRNA_H-elongata_contig13908.2719.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
LEFGNSGIWEHVDRRVGTATGGRIMNAMIAGILVTIPLPNEAFCAWKKRT
SSVSEPG
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mRNA from alignment at H-elongata_contig13908:1741..2319-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13908.2719.1 ID=mRNA_H-elongata_contig13908.2719.1|Name=mRNA_H-elongata_contig13908.2719.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=579bp|location=Sequence derived from alignment at H-elongata_contig13908:1741..2319- (Himanthalia elongata Himel1 dioecious)
CTGGAGTTTGGAAACAGCGGCATTTGGGAACACGTCGACAGGCGAGGTGT
GGATCGCGCCCTCTGCGATCGTGCCATCTTTATTCGCGAAGAGAAGCTTA
GTCTACAAAATTCGTCGGTAGTGTCTAGGTCTTTGCTTTTCTTCCTTTGT
TCAAATAGTATCGACCCAATGCAATTACCACCCCGTGGCCGCTCCAAAAA
TTTCAAGACGCTCTATTGAGACTTATCTTCTTCATAATTATGAATTCTCC
CGTAACAATGGCCACGATGTTTTTCAACTGAATGCATTGTGATATCCATC
CTCCTGATGCAGCAGACATTGCCCAGCAAATTGAGCAAGAATATCGGCCG
CCTCAAAGGCGTTTTCTGCCGTAATGAACGAGTTTATCCCAACACCGACT
AACCTCTACAACCTTTCGCACATCTATGATTACTCCCGCTTGTGTTCTTC
ACAGTGGGGACCGCGACTGGTGGTAGGATCATGAACGCCATGATTGCCGG
AATCCTGGTGACGATCCCGTTGCCAAACGAGGCGTTCTGCGCGTGGAAGA
AGCGTACGTCGTCGGTGAGTGAGCCGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig13908:1741..2319-

>mRNA_H-elongata_contig13908.2719.1 ID=mRNA_H-elongata_contig13908.2719.1|Name=mRNA_H-elongata_contig13908.2719.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig13908:1741..2319- (Himanthalia elongata Himel1 dioecious)
CTGGAGTTTGGAAACAGCGGCATTTGGGAACACGTCGACAGGCGAGCTGG
AGTTTGGAAACAGCGGCATTTGGGAACACGTCGACAGGCGAGTGGGGACC
GCGACTGGTGGTAGGATCATGAACGCCATGATTGCCGGAATCCTGGTGAC
GATCCCGTTGCCAAACGAGGCGTTCTGCGCGTGGAAGAAGCGTACGTCGT
CGGTGAGTGAGCCGGGGTGGGGACCGCGACTGGTGGTAGGATCATGAACG
CCATGATTGCCGGAATCCTGGTGACGATCCCGTTGCCAAACGAGGCGTTC
TGCGCGTGGAAGAAGCGTACGTCGTCGGTGAGTGAGCCGGGG
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