mRNA_H-elongata_contig138894.2710.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138894.2710.1
Unique NamemRNA_H-elongata_contig138894.2710.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138894.2710.1 vs. uniprot
Match: A0A425CDZ1_9STRA (Alanine--tRNA ligase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CDZ1_9STRA)

HSP 1 Score: 179 bits (453), Expect = 6.820e-53
Identity = 79/100 (79.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:    4 YLPEERVLPFDSKDNFWEMGDVGPCGPCTEIHYDRIGGRNAAKDVNMDIPEVIEIWNLVFIQYNRESDGSLKDLPNKHVDTGMGFERVASILQASDDNFE 303
            YLP ERVLPFD KDNFWEMGDVGPCGPCTEIHYDRIG R+AA  VN D+P+VIEIWN VFIQYNRE DG L  LP+KHVDTGMGFER+ASILQ  D N++
Sbjct:  197 YLPPERVLPFDCKDNFWEMGDVGPCGPCTEIHYDRIGNRDAASLVNADVPDVIEIWNNVFIQYNREQDGKLVQLPHKHVDTGMGFERLASILQGKDSNYD 296
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BLAST of mRNA_H-elongata_contig138894.2710.1 vs. uniprot
Match: D7FPP9_ECTSI (Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP9_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.070e-52
Identity = 81/101 (80.20%), Postives = 91/101 (90.10%), Query Frame = 1 
Query:    1 RYLPEERVLPFDSKDNFWEMGDVGPCGPCTEIHYDRIGGRNAAKDVNMDIPEVIEIWNLVFIQYNRESDGSLKDLPNKHVDTGMGFERVASILQASDDNFE 303
            +YLPE RVLPF   DNFWEMGDVGPCGPC EIHYDRIGGR+AAKDVNMD PEVIEIWN+VFIQYNRE+DGSLK+LPNKH+DTG+GFER+ASILQ    N++
Sbjct:  185 KYLPESRVLPFSLADNFWEMGDVGPCGPCVEIHYDRIGGRDAAKDVNMDKPEVIEIWNVVFIQYNRENDGSLKELPNKHIDTGLGFERLASILQGKMSNYD 285
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BLAST of mRNA_H-elongata_contig138894.2710.1 vs. uniprot
Match: A0A7R9WBZ2_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WBZ2_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.310e-52
Identity = 77/101 (76.24%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 RYLPEERVLPFDSKDNFWEMGDVGPCGPCTEIHYDRIGGRNAAKDVNMDIPEVIEIWNLVFIQYNRESDGSLKDLPNKHVDTGMGFERVASILQASDDNFE 303
            +YLP ERVLPFD+KDNFWEMG  GPCGPCTEIHYDRIG R+AA  VN D+P+VIEIWN VFIQYNRESDGSL+ LP +HVDTGMGFER+ SILQ  D N++
Sbjct:  144 KYLPPERVLPFDAKDNFWEMGATGPCGPCTEIHYDRIGDRDAAGLVNADLPDVIEIWNNVFIQYNRESDGSLRPLPARHVDTGMGFERLTSILQGKDSNYD 244
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BLAST of mRNA_H-elongata_contig138894.2710.1 vs. uniprot
Match: M4BPE4_HYAAE (Alanine--tRNA ligase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BPE4_HYAAE)

HSP 1 Score: 174 bits (441), Expect = 1.770e-51
Identity = 76/101 (75.25%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 RYLPEERVLPFDSKDNFWEMGDVGPCGPCTEIHYDRIGGRNAAKDVNMDIPEVIEIWNLVFIQYNRESDGSLKDLPNKHVDTGMGFERVASILQASDDNFE 303
            +YLP ERVLPF  KDNFWEMGDVGPCGPCTEIHYDRIG R+A++ VN D+P+VIEIWN VFIQ+NRE DG L  LP+KHVDTGMGFER+ASILQ  D N++
Sbjct:   96 QYLPSERVLPFGCKDNFWEMGDVGPCGPCTEIHYDRIGNRDASQLVNADVPDVIEIWNNVFIQFNREQDGKLVPLPHKHVDTGMGFERLASILQGKDSNYD 196
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BLAST of mRNA_H-elongata_contig138894.2710.1 vs. uniprot
Match: A0A3M6VMI2_9STRA (Alanine--tRNA ligase n=3 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMI2_9STRA)

HSP 1 Score: 179 bits (453), Expect = 4.200e-50
Identity = 79/100 (79.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:    4 YLPEERVLPFDSKDNFWEMGDVGPCGPCTEIHYDRIGGRNAAKDVNMDIPEVIEIWNLVFIQYNRESDGSLKDLPNKHVDTGMGFERVASILQASDDNFE 303
            YLP ERVLPFD KDNFWEMGDVGPCGPCTEIHYDRIG R+AA  VN D+P+VIEIWN VFIQYNRE DG L  LP+KHVDTGMGFER+ASILQ  D N++
Sbjct:  197 YLPPERVLPFDCKDNFWEMGDVGPCGPCTEIHYDRIGNRDAASLVNADVPDVIEIWNNVFIQYNREQDGKLVQLPHKHVDTGMGFERLASILQGKDSNYD 296
[Close]
BLAST of mRNA_H-elongata_contig138894.2710.1 vs. uniprot
Match: A0A7S1G622_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G622_9STRA)

HSP 1 Score: 174 bits (442), Expect = 4.210e-50
Identity = 74/101 (73.27%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 RYLPEERVLPFDSKDNFWEMGDVGPCGPCTEIHYDRIGGRNAAKDVNMDIPEVIEIWNLVFIQYNRESDGSLKDLPNKHVDTGMGFERVASILQASDDNFE 303
            +Y+PE R+LPFD KDNFWEMG+VGPCGPCTEIHYDRIGGR+AA  VNMD P+V+EIWNLVF+Q+NR +DGSL+ LP+KHVDTGMGFERV S+LQ    N++
Sbjct:   37 KYMPESRILPFDKKDNFWEMGEVGPCGPCTEIHYDRIGGRDAAYLVNMDDPDVLEIWNLVFMQFNRLADGSLRPLPDKHVDTGMGFERVTSVLQGKRSNYD 137
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BLAST of mRNA_H-elongata_contig138894.2710.1 vs. uniprot
Match: A0A7S3CBE2_9CHLO (Alanine--tRNA ligase (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CBE2_9CHLO)

HSP 1 Score: 171 bits (432), Expect = 5.740e-50
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 RYLPEERVLPFDSKDNFWEMGDVGPCGPCTEIHYDRIGGRNAAKDVNMDIPEVIEIWNLVFIQYNRESDGSLKDLPNKHVDTGMGFERVASILQASDDNFE 303
            + LPE +V+PFD+KDNFWEMGD GPCGPCTE+H+DR+GGR+A+  VNMD PEVIEIWNLVFIQ+NRE  G LK LPNKHVDTGMGFER+ S+LQ    N++
Sbjct:  241 KILPESQVMPFDTKDNFWEMGDTGPCGPCTELHFDRVGGRDASSLVNMDDPEVIEIWNLVFIQFNREPSGELKTLPNKHVDTGMGFERIVSVLQNKMSNYD 341
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BLAST of mRNA_H-elongata_contig138894.2710.1 vs. uniprot
Match: A0A7S2B956_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B956_9STRA)

HSP 1 Score: 163 bits (412), Expect = 6.320e-50
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:    1 RYLPEERVLPFDSKDNFWEMGDVGPCGPCTEIHYDRIGGRNAAKDVNMDIPEVIEIWNLVFIQYNRESDGSLKDLPNKHVDTGMGFERVASILQASDDNFE 303
            ++LPE RVLPFD  DNFWEMGD GPCGPC+EIH DRIGGR+AA  VN D P V+EIWNLVFIQYNRE+D +L+ LP++HVDTGMGFER+ SILQ    N++
Sbjct:    9 QFLPESRVLPFDRADNFWEMGDTGPCGPCSEIHVDRIGGRDAAHLVNADDPNVVEIWNLVFIQYNREADSALRLLPSQHVDTGMGFERLVSILQNKQSNYD 109
[Close]
BLAST of mRNA_H-elongata_contig138894.2710.1 vs. uniprot
Match: A0A1Z5KGA1_FISSO (Alanine--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGA1_FISSO)

HSP 1 Score: 177 bits (449), Expect = 1.370e-49
Identity = 78/101 (77.23%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 RYLPEERVLPFDSKDNFWEMGDVGPCGPCTEIHYDRIGGRNAAKDVNMDIPEVIEIWNLVFIQYNRESDGSLKDLPNKHVDTGMGFERVASILQASDDNFE 303
            +YLPE RVLPFD+KDNFWEMG  GPCGPCTEIHYDRIGGR+AAK VN D+P+VIEIWN VFIQYNRE+DGSL+ LP +HVDTGMGFER+ SILQ  D N++
Sbjct:  162 KYLPENRVLPFDAKDNFWEMGATGPCGPCTEIHYDRIGGRDAAKLVNADLPDVIEIWNNVFIQYNREADGSLRPLPAQHVDTGMGFERLTSILQNVDSNYD 262
[Close]
BLAST of mRNA_H-elongata_contig138894.2710.1 vs. uniprot
Match: A0A7S3L1R5_9STRA (Alanine--tRNA ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1R5_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.390e-49
Identity = 78/101 (77.23%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 RYLPEERVLPFDSKDNFWEMGDVGPCGPCTEIHYDRIGGRNAAKDVNMDIPEVIEIWNLVFIQYNRESDGSLKDLPNKHVDTGMGFERVASILQASDDNFE 303
            +YLP ERVLPFD+KDNFWEMG  GPCGPCTEIHYDRIGGR+AAK VN D+P+VIEIWN VFIQYNRE+DGSL+ LP +HVDTGMGFER+ SILQ  D N++
Sbjct:  166 QYLPPERVLPFDAKDNFWEMGATGPCGPCTEIHYDRIGGRDAAKLVNADLPDVIEIWNNVFIQYNREADGSLRPLPAQHVDTGMGFERLTSILQGVDSNYD 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138894.2710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A425CDZ1_9STRA6.820e-5379.00Alanine--tRNA ligase n=1 Tax=Peronospora effusa Ta... [more]
D7FPP9_ECTSI1.070e-5280.20Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosu... [more]
A0A7R9WBZ2_9STRA1.310e-5276.24Alanine--tRNA ligase (Fragment) n=1 Tax=Pseudictyo... [more]
M4BPE4_HYAAE1.770e-5175.25Alanine--tRNA ligase n=1 Tax=Hyaloperonospora arab... [more]
A0A3M6VMI2_9STRA4.200e-5079.00Alanine--tRNA ligase n=3 Tax=Peronospora effusa Ta... [more]
A0A7S1G622_9STRA4.210e-5073.27Alanine--tRNA ligase (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3CBE2_9CHLO5.740e-5071.29Alanine--tRNA ligase (Fragment) n=1 Tax=Chloropico... [more]
A0A7S2B956_9STRA6.320e-5070.30Alanine--tRNA ligase (Fragment) n=1 Tax=Florenciel... [more]
A0A1Z5KGA1_FISSO1.370e-4977.23Alanine--tRNA ligase n=2 Tax=Fistulifera solaris T... [more]
A0A7S3L1R5_9STRA1.390e-4977.23Alanine--tRNA ligase n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138894contigH-elongata_contig138894:709..1603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue2.3e-42
Seed eggNOG ortholog2850.Phatr47999
KEGG rclassRC00055,RC00523
KEGG koko:K01872
KEGG ReactionR03038
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
EggNOG free text desc.Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain
EggNOG OGs2XACW@2836,COG0013@1,KOG0188@2759
EC6.1.1.7
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.1901214-CDS-H-elongata_contig138894:708..8461622929824.1901214-CDS-H-elongata_contig138894:708..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138894 709..846 -
1691679173.3140833-CDS-H-elongata_contig138894:708..8461691679173.3140833-CDS-H-elongata_contig138894:708..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138894 709..846 -
1622929824.2124453-CDS-H-elongata_contig138894:1438..16031622929824.2124453-CDS-H-elongata_contig138894:1438..1603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138894 1439..1603 -
1691679173.327074-CDS-H-elongata_contig138894:1438..16031691679173.327074-CDS-H-elongata_contig138894:1438..1603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138894 1439..1603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138894.2710.1prot_H-elongata_contig138894.2710.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138894 709..1603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138894.2710.1

>prot_H-elongata_contig138894.2710.1 ID=prot_H-elongata_contig138894.2710.1|Name=mRNA_H-elongata_contig138894.2710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
RYLPEERVLPFDSKDNFWEMGDVGPCGPCTEIHYDRIGGRNAAKDVNMDI
PEVIEIWNLVFIQYNRESDGSLKDLPNKHVDTGMGFERVASILQASDDNF
E
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mRNA from alignment at H-elongata_contig138894:709..1603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138894.2710.1 ID=mRNA_H-elongata_contig138894.2710.1|Name=mRNA_H-elongata_contig138894.2710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=895bp|location=Sequence derived from alignment at H-elongata_contig138894:709..1603- (Himanthalia elongata Himel1 dioecious)
AGGTACCTTCCTGAGGAGCGCGTACTGCCCTTCGACTCTAAAGACAACTT
TTGGGAGATGGGCGATGTCGGTCCGTGCGGCCCCTGTACGGAAATCCACT
ACGACCGCATCGGGGGTCGGAATGCCGCGAAGGATGTCAACATGGACATA
CCAGAAGTCATCGAGGTGCGCGGCCACGTCTTGATGGCAATATGGTCCTG
CTTGACGTACGTTCTAAAGAGGAAGAGTGACATGCGGGTACCGGTGGCGC
GAGTTGAAGCCTACCTTGTTTGGGTACATTCGAGAGGGTGGTCGTTGTAG
TTCGCGACCCTTAAACCTTTGACATTATTTGAAACCCCCTTCATTCCCCT
CCCCTCTCCTCGATGGTCTCAAGTTGATATTGTCATCATTGTTGCTATTA
ATAGAGTTCCTCGTGATTTGTTTTATTCGTGGAGCGCATCGGTATCGATC
AAAGTCAAGTCAAGTTCCTCTGTCTGTCTTCAAGAACGCCGGAGAACCAT
CGCAATCGTGGTACTAGGTTCCGAATGTAGTCTGTCGCCGAAAAGTCGTC
TACTTTGAGAGGTAACCAGGTGCGGGCGCGGTAATATATGTGGTAAAGTG
GGTTGGCTATTAATATTACTATATATAGTACTTTCACTATTAAAATTACT
AGTCGTGCTGTTAGCTCCGCCACGCGCCGATTGGTGCTTGGCGCCGTGTT
TACTTCTTGTGTTAACTGTATTTTAACTGCGTTTTATCGTGTTGTAATCG
GTTCTAGATCTGGAACCTCGTTTTTATCCAGTACAACCGAGAGAGCGACG
GCAGCCTCAAGGACCTCCCAAACAAACATGTCGACACCGGTATGGGCTTT
GAACGCGTCGCCTCCATACTGCAGGCGAGTGATGATAATTTTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig138894:709..1603-

>mRNA_H-elongata_contig138894.2710.1 ID=mRNA_H-elongata_contig138894.2710.1|Name=mRNA_H-elongata_contig138894.2710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig138894:709..1603- (Himanthalia elongata Himel1 dioecious)
AGGTACCTTCCTGAGGAGCGCGTACTGCCCTTCGACTCTAAAGACAACTT
TTGGGAGATGGGCGATGTCGGTCCGTGCGGCCCCTGTACGGAAATCCACT
ACGACCGCATCGGGGGTCGGAATGCCGCGAAGGATGTCAACATGGACATA
CCAGAAGTCATCGAGAGGTACCTTCCTGAGGAGCGCGTACTGCCCTTCGA
CTCTAAAGACAACTTTTGGGAGATGGGCGATGTCGGTCCGTGCGGCCCCT
GTACGGAAATCCACTACGACCGCATCGGGGGTCGGAATGCCGCGAAGGAT
GTCAACATGGACATACCAGAAGTCATCGAGATCTGGAACCTCGTTTTTAT
CCAGTACAACCGAGAGAGCGACGGCAGCCTCAAGGACCTCCCAAACAAAC
ATGTCGACACCGGTATGGGCTTTGAACGCGTCGCCTCCATACTGCAGGCG
AGTGATGATAATTTTGAGATCTGGAACCTCGTTTTTATCCAGTACAACCG
AGAGAGCGACGGCAGCCTCAAGGACCTCCCAAACAAACATGTCGACACCG
GTATGGGCTTTGAACGCGTCGCCTCCATACTGCAGGCGAGTGATGATAAT
TTTGAG
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