mRNA_H-elongata_contig138804.2706.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138804.2706.1
Unique NamemRNA_H-elongata_contig138804.2706.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138804.2706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138804contigH-elongata_contig138804:792..1436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138804.2706.1prot_H-elongata_contig138804.2706.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138804 809..1436 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929823.9100618-UTR-H-elongata_contig138804:791..8081622929823.9100618-UTR-H-elongata_contig138804:791..808Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig138804 792..808 +
1691679173.1904604-UTR-H-elongata_contig138804:791..8081691679173.1904604-UTR-H-elongata_contig138804:791..808Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig138804 792..808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929823.9263551-CDS-H-elongata_contig138804:808..8141622929823.9263551-CDS-H-elongata_contig138804:808..814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138804 809..814 +
1691679173.1978722-CDS-H-elongata_contig138804:808..8141691679173.1978722-CDS-H-elongata_contig138804:808..814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138804 809..814 +
1622929823.9443393-CDS-H-elongata_contig138804:1106..14361622929823.9443393-CDS-H-elongata_contig138804:1106..1436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138804 1107..1436 +
1691679173.2054226-CDS-H-elongata_contig138804:1106..14361691679173.2054226-CDS-H-elongata_contig138804:1106..1436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138804 1107..1436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138804.2706.1

>prot_H-elongata_contig138804.2706.1 ID=prot_H-elongata_contig138804.2706.1|Name=mRNA_H-elongata_contig138804.2706.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MEIFVYQETFKLVGERVFGASTDIWTYKRGNMCISFHIHVCEGSTLRAID
LACSPFNDAHTAVNIARKLNDIFAEKGLNPSKRVTITMENTANMIKTGDV
LVLCVIHSSVML
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mRNA from alignment at H-elongata_contig138804:792..1436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138804.2706.1 ID=mRNA_H-elongata_contig138804.2706.1|Name=mRNA_H-elongata_contig138804.2706.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=645bp|location=Sequence derived from alignment at H-elongata_contig138804:792..1436+ (Himanthalia elongata Himel1 dioecious)
CCAAGACGCTCAACGACATGGAGGTAGGTCAGCCTATTTGAACCTGCCGA
TGTGCCTGCCAAAGATACGGTGTATGTATATGTTTATGTGTTTTGTACGG
GTTTGTGCTTCTTGTTGCTGCCAAGGAGGGGGCATAGTTGGTCCCCTGGA
CTACACCCTCTCATGGCGCTAAGAAGGCGTGGATGTTCATATGTTTAAAA
TAAAAATAAGTGGCGTGCGCCGCTGTTTGTTGTTGTTGTGAACTGTTGCT
ATTTATTGTCCATGCCTCGACAACACGCCCCTCCCCCCCGCCCTTTCCCT
TCAAATTCAAAACAGATATTCGTATACCAGGAGACGTTCAAGCTGGTGGG
CGAGAGGGTTTTCGGTGCGTCGACGGATATCTGGACATACAAGCGAGGCA
ATATGTGCATCTCTTTCCATATCCACGTCTGCGAAGGCTCCACGTTGAGA
GCGATCGACCTCGCGTGTTCACCCTTCAATGACGCACACACGGCAGTCAA
CATCGCCCGCAAGCTGAATGATATATTCGCAGAAAAGGGTCTGAACCCTT
CTAAGCGCGTCACCATCACCATGGAAAACACTGCCAACATGATAAAAACG
GGGGACGTGCTCGTGCTGTGTGTGATACACAGCAGTGTGATGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig138804:792..1436+

>mRNA_H-elongata_contig138804.2706.1 ID=mRNA_H-elongata_contig138804.2706.1|Name=mRNA_H-elongata_contig138804.2706.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig138804:792..1436+ (Himanthalia elongata Himel1 dioecious)
ATGGAGATGGAGATATTCGTATACCAGGAGACGTTCAAGCTGGTGGGCGA
GAGGGTTTTCGGTGCGTCGACGGATATCTGGACATACAAGCGAGGCAATA
TGTGCATCTCTTTCCATATCCACGTCTGCGAAGGCTCCACGTTGAGAGCG
ATCGACCTCGCGTGTTCACCCTTCAATGACGCACACACGGCAGTCAACAT
CGCCCGCAAGCTGAATGATATATTCGCAGAAAAGGGTCTGAACCCTTCTA
AGCGCGTCACCATCACCATGGAAAACACTGCCAACATGATAAAAACGGGG
GACGTGCTCGTGCTGTGTGTGATACACAGCAGTGTGATGCTCATATTCGT
ATACCAGGAGACGTTCAAGCTGGTGGGCGAGAGGGTTTTCGGTGCGTCGA
CGGATATCTGGACATACAAGCGAGGCAATATGTGCATCTCTTTCCATATC
CACGTCTGCGAAGGCTCCACGTTGAGAGCGATCGACCTCGCGTGTTCACC
CTTCAATGACGCACACACGGCAGTCAACATCGCCCGCAAGCTGAATGATA
TATTCGCAGAAAAGGGTCTGAACCCTTCTAAGCGCGTCACCATCACCATG
GAAAACACTGCCAACATGATAAAAACGGGGGACGTGCTCGTGCTGTGTGT
GATACACAGCAGTGTGATGCTC
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