mRNA_H-elongata_contig138643.2700.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138643.2700.1
Unique NamemRNA_H-elongata_contig138643.2700.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138643.2700.1 vs. uniprot
Match: D8LH84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH84_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.380e-32
Identity = 61/82 (74.39%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:    1 RSADVDEKAIGDRTKDPSDLVLRLGVAKAEALLPALRGEVERGELLGATLLLTGDQVVVHDGRILEKPSDDEEARRNIAGYA 246
            RSAD++E AIGDRT DP+DLVL+LG+AKAEALLPAL+ E +RGEL   + LLTGDQVVVHDGRILEKP+D++E RRNIA YA
Sbjct:   37 RSADINEAAIGDRTADPADLVLQLGLAKAEALLPALKAEADRGEL-STSWLLTGDQVVVHDGRILEKPADEDEVRRNIASYA 117
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BLAST of mRNA_H-elongata_contig138643.2700.1 vs. uniprot
Match: A0A836CPK2_9STRA (Inosine triphosphate pyrophosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPK2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.860e-26
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    1 RSADVDEKAIGDRTKDPSDLVLRLGVAKAEALLPALRGEVERGELLGATLLLTGDQVVVHDGRILEKPSDDEEARRNIAGYA 246
            R+AD+DEKAIGDR  DP+ LVL +G AKA+ALLP+L     R    GA LLLTGDQVVVHDGR+LEKP D  E RRNIA YA
Sbjct:   32 RTADIDEKAIGDRASDPAQLVLEIGTAKADALLPSLADAAARH---GARLLLTGDQVVVHDGRVLEKPHDYAEVRRNIAAYA 110
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BLAST of mRNA_H-elongata_contig138643.2700.1 vs. uniprot
Match: A0A5B8MNI5_9CHLO (Inosine triphosphate pyrophosphatase-like protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MNI5_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 4.380e-17
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 RSADVDEKAIGDRTKDPSDLVLRLGVAKAEALLPALRGEVERGELLGATLLLTGDQVVVHDGRILEKPSDDEEARRNIAGYA 246
            R+AD+DEKAI  R + P DLV  L +AKAEA+   L  E       G TLL+T DQVVVH+GRILEKP  +EE R N+ GYA
Sbjct:   53 RTADIDEKAI--RREKPEDLVTTLALAKAEAIKKKLEAEDN-----GNTLLITCDQVVVHEGRILEKPESEEEVRENVKGYA 127
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BLAST of mRNA_H-elongata_contig138643.2700.1 vs. uniprot
Match: A0A6V1TL15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TL15_HETAK)

HSP 1 Score: 81.3 bits (199), Expect = 7.410e-17
Identity = 50/86 (58.14%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 RSADVDEKAIGDRTKD----PSDLVLRLGVAKAEALLPALRGEVERGELLGATLLLTGDQVVVHDGRILEKPSDDEEARRNIAGYA 246
            R AD+DEKAIGDR+ D    P  LVL LG AKA+A+L +     + G      LLLTGDQVVVH+GRILEKP+  EEAR+ I GYA
Sbjct:   68 RVADIDEKAIGDRSADTGWDPERLVLALGNAKADAILESGLQPGDHG------LLLTGDQVVVHEGRILEKPTSLEEARQFIEGYA 147
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BLAST of mRNA_H-elongata_contig138643.2700.1 vs. uniprot
Match: A0A7S3FR97_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FR97_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 2.820e-16
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    4 SADVDEKAIGDRTKDPSDLVLRLGVAKAEALLPALRGEVERGELLGATLLLTGDQVVVHDGRILEKPSDDEEARRNIAGYA 246
            +AD+DEKAI  R KDPS+LV  L  AKAEA+   ++   E G+ L A LL+T DQVVVH+GRILEKP   EEAR  IAGYA
Sbjct:   59 TADIDEKAI--RRKDPSELVTVLAKAKAEAIKKKMKLLQEPGQELEA-LLITCDQVVVHEGRILEKPETAEEAREFIAGYA 136
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BLAST of mRNA_H-elongata_contig138643.2700.1 vs. uniprot
Match: A0A7S1UJX9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJX9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.510e-16
Identity = 46/80 (57.50%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    4 SADVDEKAIGDRTKDPSDLVLRLGVAKAEALLPALRGEVERGELLGATLLLTGDQVVVHDGRILEKPSDDEEARRNIAGY 243
            +AD+DEKAIGDR  D  +LVL +G AKA ALLP L    E G     T+LLTGDQVVV    +LEKP D +EARR I  Y
Sbjct:  101 TADIDEKAIGDRAGDVRELVLEIGKAKAAALLPRL---AEAGGEPAGTVLLTGDQVVVQGDSVLEKPRDLDEARRFIKRY 177
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BLAST of mRNA_H-elongata_contig138643.2700.1 vs. uniprot
Match: L1JWI9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JWI9_GUITC)

HSP 1 Score: 74.3 bits (181), Expect = 9.590e-15
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    7 ADVDEKAIGDRTKDPSDLVLRLGVAKAEALLPALRGEVERGELLGA--------TLLLTGDQVVVHDGRILEKPSDDEEARRNIAGY 243
            A++DEKAI  R++DP  LVL L  AKA+ALL   +   + G+  G+        TLLLT DQVVVH+GRILEKP D EEAR  I+GY
Sbjct:    4 ANIDEKAI--RSEDPEKLVLALANAKADALL---QRHCKDGKWTGSEQVDESKVTLLLTSDQVVVHEGRILEKPEDQEEARSFISGY 85
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BLAST of mRNA_H-elongata_contig138643.2700.1 vs. uniprot
Match: A0A2R6XTF4_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XTF4_MARPO)

HSP 1 Score: 74.3 bits (181), Expect = 1.630e-14
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    4 SADVDEKAIGDRTKDPSDLVLRLGVAKAEALLPALRGEVERGELLGATLLLTGDQVVVHDGRILEKPSDDEEARRNIAGYA 246
            +AD+DE +I  R + P DLV+ L  AKA+A+L  L  +    +    TLL+T DQVVVH+G ILEKP   EEARR I GY+
Sbjct:   33 TADIDESSI--RREKPEDLVMALAEAKAQAILARLATKESDADSAQQTLLITADQVVVHEGNILEKPRTSEEARRFIEGYS 111
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BLAST of mRNA_H-elongata_contig138643.2700.1 vs. uniprot
Match: UPI0011D2448A (7-methyl-GTP pyrophosphatase-like isoform X3 n=2 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2448A)

HSP 1 Score: 72.0 bits (175), Expect = 3.750e-14
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    4 SADVDEKAIGDRTKDPSDLVLRLGVAKAEALLPALRGEVERGELLGATLLLTGDQVVVHDGRILEKPSDDEEARRNIAGYA 246
            +AD+DEKAI  R + P +LV  L  AKAEA+L  L+      E +  TLL+T D VVVH+GRI EKPS  +EAR  I GY+
Sbjct:   34 TADIDEKAI--RKEKPEELVTALAEAKAEAILSRLQNVDSFVEDVHTTLLITADTVVVHEGRIREKPSSKDEARHFIEGYS 112
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BLAST of mRNA_H-elongata_contig138643.2700.1 vs. uniprot
Match: R7WEH2_AEGTA (Maf-like protein n=1 Tax=Aegilops tauschii TaxID=37682 RepID=R7WEH2_AEGTA)

HSP 1 Score: 72.8 bits (177), Expect = 4.250e-14
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 RSADVDEKAIGDRTKDPSDLVLRLGVAKAEALLPALRGEVERGELLGA---TLLLTGDQVVVHDGRILEKPSDDEEARRNIAGYA 246
            RSAD+DEK I  R + P +LV+ L  AKA+A+L  +R      E++ +   TLL+T DQVV+HDG I EKP+  EEAR+ I GY+
Sbjct:    8 RSADIDEKEI--RKEKPEELVVALAHAKADAILDKMRNNGMMKEIVDSQETTLLITADQVVIHDGVIREKPTTPEEARKFIQGYS 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138643.2700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH84_ECTSI1.380e-3274.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CPK2_9STRA1.860e-2667.07Inosine triphosphate pyrophosphatase-like protein ... [more]
A0A5B8MNI5_9CHLO4.380e-1756.10Inosine triphosphate pyrophosphatase-like protein ... [more]
A0A6V1TL15_HETAK7.410e-1758.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3FR97_9CHLO2.820e-1660.49Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A7S1UJX9_9STRA7.510e-1657.50Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
L1JWI9_GUITC9.590e-1554.02Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A2R6XTF4_MARPO1.630e-1450.62Uncharacterized protein n=3 Tax=Marchantia polymor... [more]
UPI0011D2448A3.750e-1451.857-methyl-GTP pyrophosphatase-like isoform X3 n=2 T... [more]
R7WEH2_AEGTA4.250e-1449.41Maf-like protein n=1 Tax=Aegilops tauschii TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138643contigH-elongata_contig138643:119..1576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.7e-25
Seed eggNOG ortholog2880.D8LH84
Preferred nameMAF
KEGG koko:K06287
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016119,GO:0016120,GO:0016853,GO:0016859,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046246,GO:0071704,GO:0090471,GO:1901576
EggNOG free text desc.nucleoside-triphosphate diphosphatase activity
EggNOG OGsCOG0424@1,KOG1509@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionInosine triphosphate pyrophosphatase-like
Ec32 orthologEc-24_000950.1
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929823.002458-CDS-H-elongata_contig138643:118..1951622929823.002458-CDS-H-elongata_contig138643:118..195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138643 119..195 -
1691679172.7357833-CDS-H-elongata_contig138643:118..1951691679172.7357833-CDS-H-elongata_contig138643:118..195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138643 119..195 -
1622929823.013636-CDS-H-elongata_contig138643:1407..15761622929823.013636-CDS-H-elongata_contig138643:1407..1576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138643 1408..1576 -
1691679172.7475812-CDS-H-elongata_contig138643:1407..15761691679172.7475812-CDS-H-elongata_contig138643:1407..1576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138643 1408..1576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138643.2700.1prot_H-elongata_contig138643.2700.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138643 119..1576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138643.2700.1

>prot_H-elongata_contig138643.2700.1 ID=prot_H-elongata_contig138643.2700.1|Name=mRNA_H-elongata_contig138643.2700.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
RSADVDEKAIGDRTKDPSDLVLRLGVAKAEALLPALRGEVERGELLGATL
LLTGDQVVVHDGRILEKPSDDEEARRNIAGYA
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mRNA from alignment at H-elongata_contig138643:119..1576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138643.2700.1 ID=mRNA_H-elongata_contig138643.2700.1|Name=mRNA_H-elongata_contig138643.2700.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1458bp|location=Sequence derived from alignment at H-elongata_contig138643:119..1576- (Himanthalia elongata Himel1 dioecious)
AGATCGGCGGACGTCGACGAGAAGGCGATCGGCGATCGAACCAAGGACCC
TTCCGATCTCGTGCTGCGGTTAGGAGTTGCAAAGGCGGAGGCTCTGCTTC
CCGCCCTCCGCGGCGAGGTGGAGCGCGGAGAGCTGCTGGGCGCCACGCTA
CTGCTCACGGGCGACCAAGGTGGTTGGCAGGTCAAGGCTTTTTTCTTTTT
CGGGGAAGGGATGATAGGCATCGGTGGGGAAAAGCATCAGAAATATATAA
GATTGAAAATATCGATATATATTTTTTGCTGGGGGGGGAGGGGGGGGGGA
TCAATATTCCAATTTTCAACAACATACGTACGGAATTCCGACCAAAATCA
TCCTCAGGAATTAATCGCGCTTTATCGTAGGTGATTCGTCAGCCGGGAAA
AAAGGGTGAGTGCAACCTCAAGAGAATAACACTTCACCTTTTTTCTCCTC
CTTTTTTTGGTGGTATGTATTCGGTTCGAAGTAGCAGTTCTGTTGCCACA
GCCACAAGTCCAGGGAACCAACTATCGTCAGGTTCGAATGTGTACCTTAC
TACTTTTGAGCACAAAATCGTCACACTTGATTAATCGTGTTCCGAATGGT
AACTTCATCGGATCAACGGGATAATGTCAGGGATCCCATTATTATCCCGT
ATATTATACACTATTCTTCGTGTGGGGACTATGACGTCGAACCAAAGTGT
ATAGCCTAGATAGTGAGCTATAGAAGAAGAGGGGATGCGGAAGAGAGAGA
AAGGGGACAGGTGACACTATGAGCTGTGGGATACATTGATCAATCAAGAT
AGAAACTAGGAAGATAGTTATTTAGTATAGTTTTTAGAGGGTATAGGTAA
GTTCAGCACATGGTTGCATCCTACATATATCTCGATTGATTTCGGATTGT
AGCTATTAGAAAAACGTAGATTCCTTTCTGGAAGCGTATGGCCTCACGTA
GAGGTGATTCTACAATAATATTTAACCTTTTAGATTATATACCAGGTACA
GTATATAGGTATATATTTTTAAATGAACTAATGCCAACCCTTAGAACATC
TACACACCTTCTTAGCGCACTTTTACATTATTCTTTATATGGGACTATGA
TGCCAAACAAAAGTGTATAGCCTAGAGAGAACTATAAAAGGAGAGATGTG
GGAAAAGAGAGAAAGAAAATCAGTGACACTATGAGCTGCGGGATACATTC
ATCAGTCTACATAGAAACTGTACTTACTTGTTTCTACACAATGTGTCGCT
ATAGTACACGTTCCTGCACACAAACAGTGATAGATTTATCCCGTTTCTCT
ACGAATCCCTCTGTTCACAGGACCGGTTCCTTCTCCCCATCCCGTCCCAT
TTATCGCGCCGGTGTACCGTGCCATATACAGTTGTCGTCCACGACGGACG
GATCTTGGAGAAGCCCTCGGACGACGAAGAGGCTCGGCGTAACATTGCAG
GCTACGCG
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Coding sequence (CDS) from alignment at H-elongata_contig138643:119..1576-

>mRNA_H-elongata_contig138643.2700.1 ID=mRNA_H-elongata_contig138643.2700.1|Name=mRNA_H-elongata_contig138643.2700.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig138643:119..1576- (Himanthalia elongata Himel1 dioecious)
AGATCGGCGGACGTCGACGAGAAGGCGATCGGCGATCGAACCAAGGACCC
TTCCGATCTCGTGCTGCGGTTAGGAGTTGCAAAGGCGGAGGCTCTGCTTC
CCGCCCTCCGCGGCGAGGTGGAGCGCGGAGAGCTGCTGGGCGCCACGCTA
CTGCTCACGGGCGACCAAGAGATCGGCGGACGTCGACGAGAAGGCGATCG
GCGATCGAACCAAGGACCCTTCCGATCTCGTGCTGCGGTTAGGAGTTGCA
AAGGCGGAGGCTCTGCTTCCCGCCCTCCGCGGCGAGGTGGAGCGCGGAGA
GCTGCTGGGCGCCACGCTACTGCTCACGGGCGACCAAGTTGTCGTCCACG
ACGGACGGATCTTGGAGAAGCCCTCGGACGACGAAGAGGCTCGGCGTAAC
ATTGCAGGCTACGCGTTGTCGTCCACGACGGACGGATCTTGGAGAAGCCC
TCGGACGACGAAGAGGCTCGGCGTAACATTGCAGGCTACGCG
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