prot_H-elongata_contig138480.2688.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig138480.2688.1
Unique Nameprot_H-elongata_contig138480.2688.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length110
Homology
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BLAST of mRNA_H-elongata_contig138480.2688.1 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.500e-28
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 0 
Query:   29 SALEVIDAVVDRDDDVLLVEDILEGFGEVPVSVDFSAVTDHMFIGFKAGIVRIYPDGGNTTYAATYDSCVDIEDEVRDN 107
            + LEV++ VVDRD DVL+VEDILEGFG VPVSV FS  T HMFIGFKAG VRIYPDGG+T  AA YD CVD+EDEV +N
Sbjct:   36 AGLEVLETVVDRDGDVLVVEDILEGFGRVPVSVAFSPTTTHMFIGFKAGGVRIYPDGGDTLVAAIYDDCVDMEDEVYEN 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138480.2688.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LB76_9PHAE2.500e-2873.42PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 25..109
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..22
score: 5.0
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138480contigH-elongata_contig138480:825..1154 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138480.2688.1mRNA_H-elongata_contig138480.2688.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig138480 825..1154 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig138480.2688.1 ID=prot_H-elongata_contig138480.2688.1|Name=mRNA_H-elongata_contig138480.2688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MVPRSTGAWAGIVLGGLVLVGCICGRMISALEVIDAVVDRDDDVLLVEDI
LEGFGEVPVSVDFSAVTDHMFIGFKAGIVRIYPDGGNTTYAATYDSCVDI
EDEVRDNRG*
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