prot_H-elongata_contig138433.2684.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig138433.2684.1
Unique Nameprot_H-elongata_contig138433.2684.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length135
Homology
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BLAST of mRNA_H-elongata_contig138433.2684.1 vs. uniprot
Match: D8LKP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP9_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.530e-6
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 0 
Query:   98 SEVRDLIPPLGETARNLRLLFLGVVAALTIAMMLSYPM 135
            SE+RD++PPLGE AR  RL FLGVVAAL  AM+LSYP+
Sbjct:    2 SELRDVLPPLGERARAARLAFLGVVAALAAAMVLSYPL 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138433.2684.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKP9_ECTSI2.530e-671.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 134..135
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..115
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 116..133
NoneNo IPR availableTMHMMTMhelixcoord: 116..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138433contigH-elongata_contig138433:415..819 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138433.2684.1mRNA_H-elongata_contig138433.2684.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig138433 415..819 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig138433.2684.1 ID=prot_H-elongata_contig138433.2684.1|Name=mRNA_H-elongata_contig138433.2684.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
TSSTSGGPSKTRGTREIMSASLSRHSLPTSRHGSSRHGSSWHGSSWHGSS
RHGSSSSTHGSSYHGSSRHGEITPPVVKSHPPRVHAASLLGLQVWAFSEV
RDLIPPLGETARNLRLLFLGVVAALTIAMMLSYPM
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