mRNA_H-elongata_contig10318.267.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10318.267.1
Unique NamemRNA_H-elongata_contig10318.267.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10318.267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10318contigH-elongata_contig10318:2508..4205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size603
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10318.267.1prot_H-elongata_contig10318.267.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10318 2825..4205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929567.7081563-UTR-H-elongata_contig10318:2507..28241622929567.7081563-UTR-H-elongata_contig10318:2507..2824Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10318 2508..2824 +
1691679073.6745536-UTR-H-elongata_contig10318:2507..28241691679073.6745536-UTR-H-elongata_contig10318:2507..2824Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10318 2508..2824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929567.7216313-CDS-H-elongata_contig10318:2824..30871622929567.7216313-CDS-H-elongata_contig10318:2824..3087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10318 2825..3087 +
1691679073.6838393-CDS-H-elongata_contig10318:2824..30871691679073.6838393-CDS-H-elongata_contig10318:2824..3087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10318 2825..3087 +
1622929567.7349586-CDS-H-elongata_contig10318:4183..42051622929567.7349586-CDS-H-elongata_contig10318:4183..4205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10318 4184..4205 +
1691679073.693927-CDS-H-elongata_contig10318:4183..42051691679073.693927-CDS-H-elongata_contig10318:4183..4205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10318 4184..4205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10318.267.1

>prot_H-elongata_contig10318.267.1 ID=prot_H-elongata_contig10318.267.1|Name=mRNA_H-elongata_contig10318.267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MRTYSPWPRGETNTAELNLRPKEYVAWHLRIPTEADRNTGYDPNVHTYMI
LETPDVVCSSFLEVMEDARLHCPGLFTNDTQVYISSISTSLGNSC
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mRNA from alignment at H-elongata_contig10318:2508..4205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10318.267.1 ID=mRNA_H-elongata_contig10318.267.1|Name=mRNA_H-elongata_contig10318.267.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1698bp|location=Sequence derived from alignment at H-elongata_contig10318:2508..4205+ (Himanthalia elongata Himel1 dioecious)
GCGGTATTGTAAGGCATCTCTAAATTACAACAAAGCTATCGTCCGGCTCC
CAATCGAACGTGCCAGACATATATGAAATCAAGACGTTCCGTTAATCAAG
CGATTTGATCCTTCCCAGGAGGTCCAACTCCTTAGTGCATCTTATTTTGA
ATCATGTGTCCAGGGGTCTAGTAGGCATTTGTAGATGAAGGTCTACGCTC
GAATCTTCGCTCTCTAGCTTGTAATCCATCACCATCACCTTCTGTCCTTT
TGCTTCTTAACATCACCTTAATCATTTTCCCTTTTTCCTCGTTCTTAGCC
CTTTGCTGAGAGATGCTATGAGGACCTACAGTCCATGGCCCAGGGGAGAG
ACCAACACAGCAGAGCTGAATCTTCGCCCCAAGGAGTACGTGGCGTGGCA
TTTGAGGATTCCAACAGAGGCTGACAGAAATACCGGTTATGATCCCAATG
TACACACCTACATGATTCTAGAGACACCTGATGTGGTCTGCTCGTCGTTT
CTTGAGGTTATGGAGGACGCGCGTCTACACTGCCCGGGACTCTTCACAAA
CGACACCCAAGTATATATTTCATCAATCAGGTGATCTCAGAGGCTTATGT
CGCTGTTATTTACTCCCTCTGCATCGATAACCTTACATATTTCGGACCAG
GCCTGTGCTCTTCAGCGGTGATTTTAAGACGAATGAAAGTTTTGCCCTCG
CGATACTGTCAAATACTGAAGATAACGCATAATTAATCGCGTACATCGAC
TTCAACGTCGACGGCAAGAAATTATCGTTGCGTTGAAGCCCGGGGCGTAT
ATTTTAAATATGATAATGAATCATAGGAATACACGCGTTGGGTAGTTTGA
ATCGATGCTTACTTGGATGTTGTTGTTTTTACCTTTTGACCACAGACTGG
GTTTTTGATATCAACTTATGTGAGAATTCTATAAAAAAAAACATGCTGCG
TGAACCCAGCCGATATTTTGGAAGTTAAAAATGCCAACCGACTCAGATAA
AACCACCAAACAAAGTGGTGAACCATCAAGCCCGGGTTGGTTCCACATGA
ATGATCATCCGACGAAAGTACGCCTTTTCACGTGCCTTGAGATTTGGTTG
AAGCTTTACCGCGGCAGGGAGACGTCGCAGTTGTCATTGACACAATTCTC
TTCCAGCATAAAGAAGATATTTATCCGCCAACACCTGGACCTCTCACAAT
ACATCTGCCGATAATTGCTAGTCGTTACTTGCCTAGCACAAAACAACGCG
GAGAGATACCGAATACCAAGCCCCTGCACGAGCTTCCCCAAAAATCAGGA
ATGAAAAAAATCCCTGACATAATTAAGCAATAGCTCCGAATACCCCGCTG
TGTTAACATATTAAGAGTCGTTTTCTTTCAAGTAAAGAACCTTCAGCTCG
GTATTTTAGACGGATTCGTTGCCGGTCGGTGCCCCTCTTGTCTGTGGTTA
TAATAATAAGATGTAACAAACGCGGAGGGGGACTAAACATAGCGTAAGAT
TCCCATTCATTTGTACGATCAAAGCATGTTTTGAGAAGGATACGCCACTG
TATGGAGTCATTGCTGTTTGCCTCTACATACCTTTTTCATGCCTTAAAAA
CCACCCAATAATAGTATCTTTCCTATCGCGTGGGGAAACCCTTTTGGCCC
ATCGTTTACGTTTTATTTTAATACAGCACGAGTCTGGGCAACAGCTGC
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Coding sequence (CDS) from alignment at H-elongata_contig10318:2508..4205+

>mRNA_H-elongata_contig10318.267.1 ID=mRNA_H-elongata_contig10318.267.1|Name=mRNA_H-elongata_contig10318.267.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig10318:2508..4205+ (Himanthalia elongata Himel1 dioecious)
ATGAGGACCTACAGTCCATGGCCCAGGGGAGAGACCAACACAGCAGAGCT
GAATCTTCGCCCCAAGGAGTACGTGGCGTGGCATTTGAGGATTCCAACAG
AGGCTGACAGAAATACCGGTTATGATCCCAATGTACACACCTACATGATT
CTAGAGACACCTGATGTGGTCTGCTCGTCGTTTCTTGAGGTTATGGAGGA
CGCGCGTCTACACTGCCCGGGACTCTTCACAAACGACACCCAAGTATATA
TTTCATCAATCAGATGAGGACCTACAGTCCATGGCCCAGGGGAGAGACCA
ACACAGCAGAGCTGAATCTTCGCCCCAAGGAGTACGTGGCGTGGCATTTG
AGGATTCCAACAGAGGCTGACAGAAATACCGGTTATGATCCCAATGTACA
CACCTACATGATTCTAGAGACACCTGATGTGGTCTGCTCGTCGTTTCTTG
AGGTTATGGAGGACGCGCGTCTACACTGCCCGGGACTCTTCACAAACGAC
ACCCAAGTATATATTTCATCAATCAGCACGAGTCTGGGCAACAGCTGCCA
CGAGTCTGGGCAACAGCTGC
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