prot_H-elongata_contig138029.2663.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig138029.2663.1
Unique Name	prot_H-elongata_contig138029.2663.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	93

Homology

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BLAST of mRNA_H-elongata_contig138029.2663.1 vs. uniprot
Match: D8LF76_ECTSI (Carbohydrate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF76_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.600e-9
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0

Query:   31 VSVSAAATLALVRSWKKVQEASRAGRIVESGAQIVLAIDIGSSSVRCSAYTVGSSPSLLSGC 92
            +SV A AT AL R  ++    +RA  IV  G +++LA+DIGSSSVRCSAYTVGS P L+ GC
Sbjct:    5 LSVLAVATAALTRERRRASRVARAKSIVRRGVRVLLAVDIGSSSVRCSAYTVGSPPVLVPGC 66

[Close]

BLAST of mRNA_H-elongata_contig138029.2663.1 vs. uniprot
Match: A0A6H5L722_9PHAE (FGGY_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L722_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.700e-9
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 0

Query:   10 TWGAAVTMSSSSQAIFRALFVVSVSAAATLALVRSWKKVQEASRAGRIVESGAQIVLAIDIGSSSVRCSAYTVGSSPSLLSGC 92
            TW ++  + +++ A   A   +SV A AT A+ R  ++    +RA  IV  G +++LAIDIGSSSVRCSAYTVGS P L+ GC
Sbjct:  500 TWDSSSPVGATASADTMA-GALSVLAVATAAVTRERRRASRVARAKMIVRRGVRVLLAIDIGSSSVRCSAYTVGSPPMLVPGC 581

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig138029.2663.1 vs. uniprot

BLAST of mRNA_H-elongata_contig138029.2663.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LF76_ECTSI	3.600e-9	56.45	Carbohydrate kinase n=1 Tax=Ectocarpus siliculosus...	[more]
A0A6H5L722_9PHAE	3.700e-9	46.99	FGGY_C domain-containing protein n=1 Tax=Ectocarpu...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 23..42
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 43..93
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..22
None	No IPR available	TMHMM	TMhelix		coord: 23..45

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig138029	contig	H-elongata_contig138029:232..654 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig138029.2663.1	mRNA_H-elongata_contig138029.2663.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig138029 232..655 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig138029.2663.1 ID=prot_H-elongata_contig138029.2663.1|Name=mRNA_H-elongata_contig138029.2663.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
HLSRRYEGFTWGAAVTMSSSSQAIFRALFVVSVSAAATLALVRSWKKVQE
ASRAGRIVESGAQIVLAIDIGSSSVRCSAYTVGSSPSLLSGCT