mRNA_H-elongata_contig138028.2662.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138028.2662.1
Unique NamemRNA_H-elongata_contig138028.2662.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138028.2662.1 vs. uniprot
Match: D8LEY3_ECTSI (Serine/threonine-protein phosphatase 6 regulatory subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY3_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.100e-11
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:   13 TSPINDILDKDTFTLEEILAEDEVLQEVKSLNIKLVE 123
            TSPINDILDKD+F+LEEILA+DEVLQEVKSLNIKLV+
Sbjct:    6 TSPINDILDKDSFSLEEILAQDEVLQEVKSLNIKLVD 42
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BLAST of mRNA_H-elongata_contig138028.2662.1 vs. uniprot
Match: A0A7J8Y6M6_GOSAI (Uncharacterized protein (Fragment) n=1 Tax=Gossypium aridum TaxID=34290 RepID=A0A7J8Y6M6_GOSAI)

HSP 1 Score: 53.1 bits (126), Expect = 6.090e-7
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    7 SPTSPINDILDKDTFTLEEILAEDEVLQEVKSLNIKLV 120
            S TSPI+ ILDKD FTLEE+L EDE++QE KSLN KL+
Sbjct:   84 SSTSPIDAILDKDNFTLEELLDEDEIIQECKSLNGKLI 121
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BLAST of mRNA_H-elongata_contig138028.2662.1 vs. uniprot
Match: A0A1D6NKT7_MAIZE (SIT4 phosphatase-associated family protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6NKT7_MAIZE)

HSP 1 Score: 48.9 bits (115), Expect = 9.740e-7
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    7 SPTSPINDILDKDTFTLEEILAEDEVLQEVKSLNIKLVEL 126
            S  SP++ ILDK+ FTLEE+L EDE++QE K+LN +L+ L
Sbjct:    9 SAASPVDTILDKENFTLEELLDEDEIIQECKALNSRLINL 48
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BLAST of mRNA_H-elongata_contig138028.2662.1 vs. uniprot
Match: A0A699I5K7_TANCI (Serine/threonine-protein phosphatase 6 regulatory subunit 3-like (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699I5K7_TANCI)

HSP 1 Score: 48.5 bits (114), Expect = 1.360e-6
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    7 SPTSPINDILDKDTFTLEEILAEDEVLQEVKSLNIKLV 120
            S TSP+  I+DK+ FTLEE+L EDE++QE K+LN +L+
Sbjct:    9 STTSPVETIMDKENFTLEELLDEDEIIQECKALNNRLI 46
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BLAST of mRNA_H-elongata_contig138028.2662.1 vs. uniprot
Match: A0A5D6XL33_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL33_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.920e-6
Identity = 23/37 (62.16%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   13 TSPINDILDKDTFTLEEILAEDEVLQEVKSLNIKLVE 123
            +SP+ND+L+KD FTLE++L EDE++QEVK+ N KL+E
Sbjct:   22 SSPLNDLLEKDDFTLEQVLEEDELIQEVKTRNTKLLE 58
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BLAST of mRNA_H-elongata_contig138028.2662.1 vs. uniprot
Match: A0A6A3YR10_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YR10_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.920e-6
Identity = 23/37 (62.16%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   13 TSPINDILDKDTFTLEEILAEDEVLQEVKSLNIKLVE 123
            +SP+ND+L+KD FTLEE+L EDE++QEVK+ N KL++
Sbjct:   24 SSPLNDLLEKDGFTLEEVLQEDELVQEVKTRNTKLID 60
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BLAST of mRNA_H-elongata_contig138028.2662.1 vs. uniprot
Match: A0A7N0RDC2_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0RDC2_KALFE)

HSP 1 Score: 51.2 bits (121), Expect = 2.920e-6
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 SASPTSPINDILDKDTFTLEEILAEDEVLQEVKSLNIKLV 120
            S SP SP+  ILDK+TFTLEE+L E+E++QE K+LN +L+
Sbjct:    7 SLSPGSPVEAILDKETFTLEELLDEEEIIQECKALNSRLI 46
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BLAST of mRNA_H-elongata_contig138028.2662.1 vs. uniprot
Match: K3WM88_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM88_GLOUD)

HSP 1 Score: 51.2 bits (121), Expect = 2.920e-6
Identity = 23/37 (62.16%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   13 TSPINDILDKDTFTLEEILAEDEVLQEVKSLNIKLVE 123
            +SP+ND+L+KD FTLE++L EDE++QEVK+ N KL+E
Sbjct:   23 SSPLNDLLEKDDFTLEQVLEEDELIQEVKTRNTKLLE 59
[Close]
BLAST of mRNA_H-elongata_contig138028.2662.1 vs. uniprot
Match: A0A6A4ZAD9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZAD9_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.340e-6
Identity = 21/37 (56.76%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:   13 TSPINDILDKDTFTLEEILAEDEVLQEVKSLNIKLVE 123
            +SP++D+LDK+ +TLE++L EDE++QEVKS N+KL++
Sbjct:   12 SSPLSDLLDKEDYTLEQVLEEDELIQEVKSRNVKLLQ 48
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BLAST of mRNA_H-elongata_contig138028.2662.1 vs. uniprot
Match: H3GKK2_PHYRM (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=H3GKK2_PHYRM)

HSP 1 Score: 50.8 bits (120), Expect = 3.990e-6
Identity = 23/37 (62.16%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   13 TSPINDILDKDTFTLEEILAEDEVLQEVKSLNIKLVE 123
            +SP+ND+L+KD FTLE++L EDE++QEVK+ N KL+E
Sbjct:   24 SSPLNDLLEKDDFTLEQVLQEDELVQEVKTRNTKLLE 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138028.2662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEY3_ECTSI5.100e-1189.19Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A7J8Y6M6_GOSAI6.090e-771.05Uncharacterized protein (Fragment) n=1 Tax=Gossypi... [more]
A0A1D6NKT7_MAIZE9.740e-757.50SIT4 phosphatase-associated family protein n=1 Tax... [more]
A0A699I5K7_TANCI1.360e-657.89Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A5D6XL33_9STRA2.920e-662.16Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A3YR10_9STRA2.920e-662.16Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A7N0RDC2_KALFE2.920e-660.00Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
K3WM88_GLOUD2.920e-662.16Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6A4ZAD9_9STRA3.340e-656.76Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
H3GKK2_PHYRM3.990e-662.16Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138028contigH-elongata_contig138028:74..202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog2880.D8LEY3
KEGG koko:K15501
GOsGO:0000226,GO:0000235,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005818,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007275,GO:0008150,GO:0009790,GO:0009987,GO:0015630,GO:0016043,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0030029,GO:0030036,GO:0030588,GO:0030590,GO:0030865,GO:0030866,GO:0032501,GO:0032502,GO:0040001,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051293,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0071840,GO:0071944,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1902850,GO:1903047
EggNOG free text desc.protein phosphatase binding
EggNOG OGsKOG2073@1,KOG2073@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929819.2006278-CDS-H-elongata_contig138028:73..2021622929819.2006278-CDS-H-elongata_contig138028:73..202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138028 74..202 +
1691679169.9995804-CDS-H-elongata_contig138028:73..2021691679169.9995804-CDS-H-elongata_contig138028:73..202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138028 74..202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138028.2662.1prot_H-elongata_contig138028.2662.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138028 74..202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138028.2662.1

>prot_H-elongata_contig138028.2662.1 ID=prot_H-elongata_contig138028.2662.1|Name=mRNA_H-elongata_contig138028.2662.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
SASPTSPINDILDKDTFTLEEILAEDEVLQEVKSLNIKLVEL*
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mRNA from alignment at H-elongata_contig138028:74..202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138028.2662.1 ID=mRNA_H-elongata_contig138028.2662.1|Name=mRNA_H-elongata_contig138028.2662.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig138028:74..202+ (Himanthalia elongata Himel1 dioecious)
TCCGCGTCCCCGACAAGCCCGATCAATGACATCCTGGACAAGGACACGTT
CACGCTGGAGGAAATTCTTGCTGAGGACGAAGTCTTGCAGGAGGTCAAGA
GCCTCAACATCAAGCTCGTCGAATTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig138028:74..202+

>mRNA_H-elongata_contig138028.2662.1 ID=mRNA_H-elongata_contig138028.2662.1|Name=mRNA_H-elongata_contig138028.2662.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig138028:74..202+ (Himanthalia elongata Himel1 dioecious)
TCCGCGTCCCCGACAAGCCCGATCAATGACATCCTGGACAAGGACACGTT
CACGCTGGAGGAAATTCTTGCTGAGGACGAAGTCTTGCAGGAGGTCAAGA
GCCTCAACATCAAGCTCGTCGAATTGTGATCCGCGTCCCCGACAAGCCCG
ATCAATGACATCCTGGACAAGGACACGTTCACGCTGGAGGAAATTCTTGC
TGAGGACGAAGTCTTGCAGGAGGTCAAGAGCCTCAACATCAAGCTCGTCG
AATTGTGA
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