mRNA_H-elongata_contig137811.2656.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: D8LRA8_ECTSI (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA8_ECTSI) HSP 1 Score: 423 bits (1087), Expect = 4.130e-140 Identity = 259/478 (54.18%), Postives = 307/478 (64.23%), Query Frame = 1
Query: 1 AGTATSPTVISVKEALKLGLAEGLHSRLGD-------------SGVVID-PDSDFVVEVTAKAPEADAHAKALLLGESFQPPSGRKKQP-GWP-GSGRWSKKRQRREEHRNQGLTVGAVKKGLLDLDGEGRARMRRWVKSL-EAGRQGGNEKPQALKNHGDTEGNVRRLERESDEVEGVSCMNENMDVDTTDVENGLEDKNESGKSKNHLMKEESISGSVS---------VEYTAQSSIV------PASNTNDLNSGSDVRVPFQAYCDIAIRRLPIHFWGRYTKLSRVVPQTPWVKGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRP--ELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
AG + V+ VKEALK+GLA L + L + V +D DSDF+VEVTA+APEADAHA LLG SG K P GWP G GRW+KKRQRRE+ RN GLTVGAVKKGL ++D GR RMRRWV+ L E R GG + G E V + + V D E K+ +G++ + + +SG+V+ A++ +V P S T S +A C++AIRR PIHFWGRYTKLSR VPQTPW KGF+SVQEAVSEPF+ FSG +E LLHG+GREDVDVRMLG GRPF LELVDSLRSVDEI LP+L AVN+ G +NAGGGVAVS L+V+GPG+LPSDVQ VGEGKRKHYRCVVWVSR VG +EL + LC ELVVQQATP+RVLHRRTL+DRPRSIF MR +W+N+HFF L L TSAG
Sbjct: 77 AGQISRQAVVPVKEALKIGLAHVLKAHLQTRQEEAAAVAAVTAAVVTVDHQDSDFMVEVTARAPEADAHAATALLGGPAPSRSGAGKPPRGWPAGGGRWAKKRQRREQQRNPGLTVGAVKKGLNEMDDAGRERMRRWVQGLIEERRTGGGIE------EGIEEEPVASIGGATRAXXXXXXXXXXXVVGGGDGVVDAEPKDSTGQAVDGVTP---VSGTVAGGDAREGSPAAIPAEAPVVRAAGPPPPSATPSDASTHPTSAGAEALCEVAIRRKPIHFWGRYTKLSRSVPQTPWFKGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVDVRMLGKGRPFCLELVDSLRSVDEIAARLPSLADAVNTAGGVKNAGGGVAVSRLQVSGPGELPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALCEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRAEWINEHFFQLELATSAG 545
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A6H5KZN5_9PHAE (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZN5_9PHAE) HSP 1 Score: 422 bits (1086), Expect = 2.240e-137 Identity = 258/467 (55.25%), Postives = 304/467 (65.10%), Query Frame = 1
Query: 1 AGTATSPTVISVKEALKLGLAEGLHSRL-------------GDSGVVID-PDSDFVVEVTAKAPEADAHAKALLLGESFQPPSGRKKQP-GWP-GSGRWSKKRQRREEHRNQGLTVGAVKKGLLDLDGEGRARMRRWVKSL-EAGRQGGNEKPQALKNHGDTEGNVRRLE--RESDEVEGVSCMNENMDVDTT-DVENGLEDKNESGKSKNHLMKEESISGS-VSVEYTAQSSIVPASNTNDLNSGSDVRVPFQAYCDIAIRRLPIHFWGRYTKLSRVVPQTPWVKGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRP--ELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
AG + V+ VKEALK+GLA L + L + V +D DSDF+VEVTA+APEADAHA LLG SG K P GWP G GRW+KKRQRREE RN GLTVGAVKKGL ++D GR RMRRWV+ L + R GG + + + G G R ++ V G + + D+T +G+ SG +E S + + + + P S T S +A C++AIRR IHFWGRYTKLSR VPQTPW KGF+SVQEAVSEPF+ FSG +E LLHG+GREDVDVRMLG GRPF LELVDSLRSVDEI LP+L AVN+ G +N GGGVAVS LRVAGPG+LPSDVQ VGEGKRKHYRCVVWVSR VG +EL + LC ELVVQQATP+RVLHRRTL+DRPRSIF MR +W+N+HFF L L TSAG
Sbjct: 287 AGQISRQAVVPVKEALKIGLARTLRAHLQTRQEAAAAVXXXXXAVVTVDHQDSDFMVEVTARAPEADAHAATALLGGPAPSHSGAGKPPRGWPAGGGRWAKKRQRREEQRNPGLTVGAVKKGLNEMDDAGRERMRRWVQGLIQERRTGGEIEEVPVASLGGITGAADSSSGGRAAEVVRGGDGVVDAEPKDSTGQAVDGVTPV--SGTVVGGDAREGSPAAAPAEAPVVRAAGVPPPSATPSDASIHPTSGGAEALCEVAIRRKSIHFWGRYTKLSRSVPQTPWFKGFYSVQEAVSEPFQAFSGCVEGLLHGAGREDVDVRMLGKGRPFCLELVDSLRSVDEIAARLPSLADAVNTAGGVKNVGGGVAVSRLRVAGPGELPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALCEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRAEWINEHFFQLELATSAG 751
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A836CNG6_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG6_9STRA) HSP 1 Score: 182 bits (463), Expect = 3.040e-47 Identity = 106/221 (47.96%), Postives = 137/221 (61.99%), Query Frame = 1
Query: 706 CDIAIRRLPIHFWGRYTKLSRVVPQTPWVKGF---------FSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRP---ELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
C A+ R P + +GRY KLSR VPQ+PW G SVQE V+ P E + E L G+GRED+DVRMLGNGRPF LE++DS + ++ ALP LQ+ VN+ G N+ G V VS+ ++ G D+ S +Q EGKRKHYRCVVW SR V EL L P +L V+Q+TPVRVLHRR + R +++ +R + FFVL+LTTSAG
Sbjct: 417 CAAALERQPQYVFGRYRKLSRSVPQSPWTVGRGADAVRIGDASVQEIVAAPLEALARCREVKLAGAGREDMDVRMLGNGRPFVLEVIDSKVTAQQLADALPRLQREVNACTGL-NSEGAVEVSDFKLVGR-DIYSQIQEGAEGKRKHYRCVVWTSRDVSQAELDAALHAHPPGADLEVRQSTPVRVLHRRAALTRVKTVRALRAARVAPRFFVLSLTTSAG 635
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A8J5Y2V0_DIALT (tRNA pseudouridine(55) synthase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y2V0_DIALT) HSP 1 Score: 152 bits (384), Expect = 2.300e-37 Identity = 90/219 (41.10%), Postives = 127/219 (57.99%), Query Frame = 1
Query: 706 CDIAIR--RLPIHFWGRYTKLSRVVPQTPW-----VKGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDS--LRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGK-RKHYRCVVWVSRAVGDKELKRTLCNRPELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
C ++R P+ GRY K SR +PQTPW +G SVQE + + + + HG+GREDVDVRMLG+GRPF +E+ + L + L L+ A+N A V VS+LRV P D+ R GE + RK YRCVVW+SR V +E+ L E++++Q TP+RVLHRR L+ RPR+++ MR + LN H+ +L+L T +G
Sbjct: 241 CSASLRASHAPVCIGGRYNKYSREMPQTPWWLDNEKRGISSVQEELQTVLQPAYAASATVFHGAGREDVDVRMLGSGRPFVIEMQEPACLEPGTAVGTPLAELEAAINL------ASEHVQVSQLRVV-PSSSIGDLVREGESEHRKAYRCVVWLSRRVSAREVADKLDGAGEVLLEQRTPIRVLHRRPLLTRPRTVYSMRSELLNGHYLMLDLVTQSG 452
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A5A8CYU0_CAFRO (tRNA pseudouridine(55) synthase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYU0_CAFRO) HSP 1 Score: 145 bits (365), Expect = 8.720e-36 Identity = 93/213 (43.66%), Postives = 125/213 (58.69%), Query Frame = 1
Query: 712 IAIRRLPIHFWGRYTKLSRVVPQTPW----VKGFF-SVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDS-LRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRPELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
+A+RR + GRY+K +R V QT W +G + SV+E ++ G+ ++ LHGSGREDVDVRMLG GRPF LEL + SV + + A++ +N + GV V+ELR+A D+ + G+ KRK Y +V AV + L+ L EL V Q TPVRVLHRR+LMDRP+ I MR W+N H+FVL L TSAG
Sbjct: 67 VAVRRESLFVRGRYSKTARGVSQTAWRLEGQEGLYRSVEEVAADHLAPLFGAADSRLHGSGREDVDVRMLGGGRPFVLELKQPRISSVSQAAIDQAAMR--IN------RSPEGVTVTELRLATTSDVDAVTAGAGD-KRKEYAALVRCRAAVTPEFLRERLDAVKELAVCQTTPVRVLHRRSLMDRPKVIHGMRTRWVNAHWFVLRLVTSAG 270
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A0D2WJ29_CAPO3 (tRNA pseudouridine(55) synthase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WJ29_CAPO3) HSP 1 Score: 147 bits (370), Expect = 9.830e-35 Identity = 91/209 (43.54%), Postives = 125/209 (59.81%), Query Frame = 1
Query: 724 RLPIHFWGRYTKLSRVVPQTPWV-----KGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITV-ALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRPELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
R PI GRY K SRVV Q+P++ KG SV E ++ P + G+ E L SGRED+DVRMLG GRPF LE+ D+ RS +T L LQ VN AGG V + +L VA D+P+ + + K+K Y V+WVSR + +++ L E+VVQQ TP+RV+HRR + RPRS++ MR +N+H+ +L L+T AG
Sbjct: 392 RDPIFIGGRYNKYSRVVSQSPYIVGEERKGDTSVHELIAAPMLAYCGASEIKLSSSGREDMDVRMLGRGRPFVLEIADARRS--SLTPDKLAHLQALVNDA-----AGGRVHIRDLIVAQRADIPA-LNEGEDDKKKLYGAVIWVSRPITAEDIA-ALTRPEEMVVQQMTPLRVMHRRAICTRPRSVYWMRAHQINEHYLLLCLSTQAG 591
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A7S2WQC3_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQC3_9STRA) HSP 1 Score: 138 bits (348), Expect = 9.750e-34 Identity = 81/215 (37.67%), Postives = 123/215 (57.21%), Query Frame = 1
Query: 709 DIAIR--RLPIHFWGRYTKLSRVVPQTPWV-----KGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRPELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
D+AI+ R P+ GRY KL+R VPQ+PW KG SV+E + + G+ E +GRED+DVRMLG+GRPF +E++ R A+ + +++NS + N V V L+ P + ++ K+K YRC+VWVS+ V ++L+ L + +L V Q TP+RV+HRR+ M R + I +R W+N H+F L++ SAG
Sbjct: 58 DMAIKWVRQPLFLGGRYRKLARDVPQSPWFIDGQRKGRGSVEECLGHAIQAAFGADEVKFQAAGREDIDVRMLGHGRPFLVEVLQPRRLT--ALSAVDQIMRSINSDMTGPNKDQDVEVEALQWV-PRSVEKEMHDGAADKKKGYRCMVWVSKPVTPQDLEARLDSVADLKVAQDTPIRVVHRRSPMIRDKMIHSLRTSWINSHWFQLDVVASAG 269
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A7S1A4R1_NOCSC (tRNA pseudouridine(55) synthase n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A4R1_NOCSC) HSP 1 Score: 141 bits (356), Expect = 1.290e-33 Identity = 85/217 (39.17%), Postives = 122/217 (56.22%), Query Frame = 1
Query: 697 QAYCDIAIRRLPIHFWGRYTKLSRVVPQTPWV-----KGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRPELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
Q+ +A+ R I+ GRY KL R +PQ WV +G SV+E V+EP + G+ +H GRED+DVRMLG GR F +E+ D+ R+ T++ ++ AVN G + +S L P + S +Q E RK Y CV W RA+ + +L TL N ++ V Q TP+RVLHRRT RPR++ M+ +NDH+F L ++T AG
Sbjct: 224 QSKVAVALGRSAIYLVGRYLKLQRGIPQAKWVVDDERRGDTSVEELVTEPIAKQFGASSCGMHAEGREDIDVRMLGQGRTFVVEVRDAERT----TLSCAGVESAVNVACGDA-----LKISGLERCDPSRM-SSLQAHAEAHRKTYVCVCWSQRALAEADLV-TLSNMTDIEVAQQTPLRVLHRRTQATRPRTVHWMKATRINDHYFTLRVSTQAG 429
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A8K1C5Y9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5Y9_PYTOL) HSP 1 Score: 139 bits (351), Expect = 1.140e-32 Identity = 95/225 (42.22%), Postives = 127/225 (56.44%), Query Frame = 1
Query: 697 QAYCDIAIRRLPIHFWGRYTKLSRVVPQTPWV-----KGFFSVQEAVSE---PFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSVDEITVA-LPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNR----PELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
Q C + + R P++ GRY K R + QTPWV G SV+E + E PF + SG H +GREDVDVRMLGNGRPF LE++D+ +S ++T A LQ AVN+ G V + E++ A + +Q + KRK Y CVVW +KEL L + +L +QQ TP+RVLHRRTLM RP+ I + + LN H+ +L LTTSAG
Sbjct: 264 QPTCGVVLERDPVYIQGRYLKYKRGLSQTPWVLDGVRMGDSSVEECIGEVGLPFFKGSGY---KFHTAGREDVDVRMLGNGRPFILEILDAKKS--KLTPAEYEQLQAAVNT-----THQGAVEIREVK-ASTKEYFGKLQAGADSKRKTYCCVVW-----SEKELTPDLVAKLDAIHDLTIQQQTPIRVLHRRTLMTRPKVIHATKCEVLNKHYMLLRLTTSAG 472
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Match: A0A067D9A4_SAPPC (tRNA pseudouridine(55) synthase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9A4_SAPPC) HSP 1 Score: 139 bits (349), Expect = 1.710e-32 Identity = 91/223 (40.81%), Postives = 120/223 (53.81%), Query Frame = 1
Query: 685 RVPFQAYCDIAIRRLPIHFWGRYTKLSRVVPQTPWV-----KGFFSVQEAVSEPFEEFSGSIEALLHGSGREDVDVRMLGNGRPFSLELVDSLRSV--DEITVALPALQKAVNSGVGQRNAGGGVAVSELRVAGPGDLPSDVQRVGEGKRKHYRCVVWVSRAVGDKELKRTLCNRPELVVQQATPVRVLHRRTLMDRPRSIFDMRVDWLNDHFFVLNLTTSAG 1332
R A +++ R P++ GRY K R + QTPWV G SV+EA+ + G+ H +GREDVDVRMLGNGRPF LEL+D+ + ++ + A A N+ + V + EL A + +Q + KRK Y CVVW S V E L +L V Q TPVRVLHRRTL+ RP+ I D V+ LNDH+ +L LTTSAG
Sbjct: 230 RAQSAASISVSVERAPVYVAGRYLKFMRGLSQTPWVLDGERMGDSSVEEAIGDIISPVFGAKSYKFHTAGREDVDVRMLGNGRPFILELLDAKVATLPADMYATVQAQVNAANTDI--------VEIRELSSATKEGFAA-LQSGADSKRKTYCCVVWTS-GVLTPERVAILNGICDLRVGQKTPVRVLHRRTLLTRPKVIHDASVELLNDHYMLLRLTTSAG 442 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137811.2656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig137811.2656.1 >prot_H-elongata_contig137811.2656.1 ID=prot_H-elongata_contig137811.2656.1|Name=mRNA_H-elongata_contig137811.2656.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=453bp AGTATSPTVISVKEALKLGLAEGLHSRLGDSGVVIDPDSDFVVEVTAKAPback to top mRNA from alignment at H-elongata_contig137811:23..1381+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig137811.2656.1 ID=mRNA_H-elongata_contig137811.2656.1|Name=mRNA_H-elongata_contig137811.2656.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1359bp|location=Sequence derived from alignment at H-elongata_contig137811:23..1381+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig137811:23..1381+ >mRNA_H-elongata_contig137811.2656.1 ID=mRNA_H-elongata_contig137811.2656.1|Name=mRNA_H-elongata_contig137811.2656.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2718bp|location=Sequence derived from alignment at H-elongata_contig137811:23..1381+ (Himanthalia elongata Himel1 dioecious)back to top |